Wall clock time and date at job start Wed Apr 1 2020 05:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86796 * 120.00640 * 2 1 4 4 H 1.48499 * 109.47127 * 270.00173 * 3 2 1 5 5 H 1.48507 * 109.46975 * 29.99731 * 3 2 1 6 6 H 1.48501 * 109.47595 * 149.99629 * 3 2 1 7 7 C 1.38955 * 119.99406 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99886 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00057 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99667 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99903 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99592 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46751 * 180.02562 * 12 10 9 14 14 C 1.49312 * 111.00300 * 55.45435 * 13 12 10 15 15 C 1.55036 * 102.76163 * 161.49019 * 14 13 12 16 16 C 1.55878 * 103.25952 * 323.92616 * 15 14 13 17 17 H 1.09003 * 109.62269 * 258.92217 * 16 15 14 18 18 C 1.51167 * 107.30465 * 139.79571 * 16 15 14 19 19 C 1.51115 * 114.90156 * 207.08047 * 18 16 15 20 20 N 1.45507 * 111.37509 * 46.13220 * 19 18 16 21 21 C 1.34781 * 119.37718 * 132.30719 * 20 19 18 22 22 O 1.21604 * 119.99418 * 176.42497 * 21 20 19 23 23 C 1.47423 * 120.00048 * 356.42009 * 21 20 19 24 24 C 1.41292 * 126.41278 * 42.97156 * 23 21 20 25 25 N 1.30449 * 108.02493 * 179.85168 * 24 23 21 26 26 N 1.39934 * 108.89364 * 0.40739 * 25 24 23 27 27 H 0.97003 * 125.75267 * 179.74125 * 26 25 24 28 28 C 1.34261 * 108.49238 * 359.73358 * 26 25 24 29 29 C 1.45233 * 121.24444 * 312.33418 * 20 19 18 30 30 C 1.47178 * 110.99732 * 170.00074 * 13 12 10 31 31 H 1.08999 * 103.91639 * 318.10446 * 30 13 12 32 32 H 0.97007 * 119.99832 * 0.02562 * 1 2 3 33 33 H 0.96993 * 120.00097 * 359.97438 * 9 7 2 34 34 H 1.09006 * 109.47179 * 299.99917 * 12 10 9 35 35 H 1.08996 * 109.47042 * 60.00370 * 12 10 9 36 36 H 1.09002 * 110.75522 * 279.81038 * 14 13 12 37 37 H 1.09003 * 110.75637 * 43.17434 * 14 13 12 38 38 H 1.08997 * 110.66017 * 205.48162 * 15 14 13 39 39 H 1.08998 * 110.79807 * 82.43604 * 15 14 13 40 40 H 1.09002 * 108.38528 * 85.68475 * 18 16 15 41 41 H 1.08996 * 108.27001 * 328.39238 * 18 16 15 42 42 H 1.08999 * 109.10129 * 285.63895 * 19 18 16 43 43 H 1.09006 * 109.09531 * 166.61618 * 19 18 16 44 44 H 1.08002 * 125.98630 * 359.97438 * 24 23 21 45 45 H 1.08002 * 126.29235 * 179.97438 * 28 26 25 46 46 H 1.09005 * 108.50919 * 275.04944 * 29 20 19 47 47 H 1.08996 * 108.38964 * 157.46028 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0087 -1.2035 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3231 -2.3907 0.0005 10 6 1.9970 -3.5580 0.0005 11 8 3.2099 -3.5580 0.0010 12 6 1.2433 -4.8630 0.0011 13 7 2.1979 -5.9796 0.0016 14 6 3.1465 -5.8722 1.1497 15 6 3.7118 -7.3114 1.2626 16 6 2.4860 -8.2060 0.9063 17 1 2.0457 -8.6046 1.8203 18 6 2.9928 -9.3413 0.0463 19 6 1.9722 -9.9247 -0.9033 20 7 1.2444 -8.8797 -1.6071 21 6 1.0903 -8.9664 -2.9433 22 8 0.4291 -8.1343 -3.5342 23 6 1.7234 -10.0698 -3.6883 24 6 1.7647 -11.4280 -3.3012 25 7 2.4090 -12.0907 -4.2218 26 7 2.8129 -11.1998 -5.2225 27 1 3.3126 -11.4326 -6.0206 28 6 2.3918 -9.9686 -4.8918 29 6 0.6814 -7.7448 -0.8971 30 6 1.5121 -7.2597 0.2408 31 1 0.7941 -7.0293 1.0279 32 1 -0.4850 0.8401 -0.0004 33 1 0.3532 -2.3906 0.0005 34 1 0.6170 -4.9205 0.8914 35 1 0.6164 -4.9209 -0.8886 36 1 3.9422 -5.1610 0.9281 37 1 2.6192 -5.5918 2.0616 38 1 4.0522 -7.5123 2.2784 39 1 4.5213 -7.4663 0.5493 40 1 3.3475 -10.1370 0.7014 41 1 3.8374 -8.9766 -0.5381 42 1 1.2658 -10.5328 -0.3381 43 1 2.4822 -10.5562 -1.6309 44 1 1.3361 -11.8449 -2.4018 45 1 2.5479 -9.0649 -5.4623 46 1 -0.2991 -8.0280 -0.5140 47 1 0.5520 -6.9261 -1.6050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222309422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:55 Heat of formation + Delta-G solvation = 7.635010 kcal Electronic energy + Delta-G solvation = -30963.600680 eV Core-core repulsion = 26761.544635 eV Total energy + Delta-G solvation = -4202.056045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.49127 -41.53745 -40.28855 -39.38120 -37.01031 -35.94158 -34.46090 -33.29576 -33.06703 -31.92029 -31.10824 -30.63192 -28.18000 -26.28815 -26.02746 -24.07684 -23.53215 -22.81251 -22.34676 -21.06422 -20.86046 -19.91797 -19.58853 -18.90528 -17.80447 -17.47896 -17.22103 -16.89234 -16.56696 -16.31279 -16.13076 -15.73128 -15.65311 -15.55504 -15.49432 -15.18298 -14.87384 -14.45454 -14.19927 -13.95100 -13.90098 -13.56784 -13.46674 -13.44426 -13.09602 -12.94513 -12.60631 -12.43379 -12.31390 -12.17033 -12.13920 -11.99105 -11.73385 -11.53913 -11.36404 -11.33766 -10.94697 -10.68670 -10.21876 -10.02854 -9.84471 -9.51618 -9.32354 -8.48187 -5.97166 0.64624 1.21447 1.36436 1.39947 1.53066 1.77171 1.96583 2.01002 2.26557 2.35264 2.71467 3.18158 3.26076 3.54428 3.63837 3.70985 3.84811 3.92878 4.05104 4.08409 4.19965 4.26897 4.31226 4.37614 4.42891 4.44870 4.48810 4.53156 4.58866 4.71097 4.73268 4.77320 4.96216 4.97515 5.04449 5.19108 5.28383 5.29591 5.36695 5.39044 5.45146 5.66513 5.86825 5.97722 6.10529 6.23174 6.44655 6.54203 6.58071 7.10468 7.23212 7.52593 8.08154 8.69508 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.002462 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.066031 B =11367.898384 C =12256.533333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.442 3.558 11 O -0.612 6.612 12 C 0.047 3.953 13 N -0.505 5.505 14 C 0.031 3.969 15 C -0.110 4.110 16 C -0.073 4.073 17 H 0.106 0.894 18 C -0.120 4.120 19 C 0.097 3.903 20 N -0.589 5.589 21 C 0.587 3.413 22 O -0.591 6.591 23 C -0.311 4.311 24 C 0.090 3.910 25 N -0.314 5.314 26 N -0.450 5.450 27 H 0.459 0.541 28 C 0.131 3.869 29 C 0.135 3.865 30 C 0.062 3.938 31 H 0.039 0.961 32 H 0.278 0.722 33 H 0.395 0.605 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.218 0.782 45 H 0.203 0.797 46 H 0.081 0.919 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.795 -27.181 -1.724 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.230 3.770 11 O -0.498 6.498 12 C -0.084 4.084 13 N -0.230 5.230 14 C -0.096 4.096 15 C -0.149 4.149 16 C -0.092 4.092 17 H 0.124 0.876 18 C -0.158 4.158 19 C -0.024 4.024 20 N -0.319 5.319 21 C 0.377 3.623 22 O -0.472 6.472 23 C -0.326 4.326 24 C -0.098 4.098 25 N -0.136 5.136 26 N -0.157 5.157 27 H 0.307 0.693 28 C -0.023 4.023 29 C 0.011 3.989 30 C -0.047 4.047 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.127 0.873 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.235 0.765 45 H 0.220 0.780 46 H 0.099 0.901 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.793 -27.733 -2.863 28.138 hybrid contribution -0.822 2.384 0.441 2.560 sum 2.971 -25.349 -2.421 25.637 Atomic orbital electron populations 1.69683 1.06918 1.29338 1.50285 1.26081 0.96561 1.02513 0.96247 0.84907 0.77909 0.76750 0.78635 1.19741 1.19411 1.19597 1.19661 0.92676 0.83862 1.49922 0.90209 1.41928 1.09278 1.04736 1.65057 1.20575 0.88260 0.85802 0.82408 1.90433 1.15412 1.87599 1.56363 1.21965 0.94404 0.89245 1.02810 1.64700 1.14903 1.00161 1.43255 1.23428 0.96639 0.99031 0.90494 1.22983 0.97319 0.92027 1.02522 1.21079 0.94576 0.94588 0.98978 0.87628 1.21167 0.98265 0.98281 0.98071 1.21571 0.95312 0.89313 0.96242 1.47066 1.54803 1.23720 1.06330 1.17793 0.79102 0.83835 0.81588 1.90774 1.42651 1.44389 1.69409 1.20165 1.16680 0.94989 1.00766 1.24479 0.96246 0.90134 0.98917 1.77123 1.19832 1.16810 0.99791 1.46200 1.44074 1.04439 1.21001 0.69305 1.23256 0.93384 0.91025 0.94633 1.20129 0.95460 0.89252 0.94048 1.21067 0.96521 0.91063 0.96028 0.94279 0.91269 0.77137 0.91235 0.88574 0.90877 0.94746 0.89067 0.91318 0.87299 0.93112 0.88745 0.87740 0.76522 0.77998 0.90109 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.07 13.05 21.66 0.28 -50.78 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 0.99 43.83 29.55 68.60 2.03 45.86 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.33 -19.31 9.68 84.04 0.81 -18.50 16 8 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 9 N -0.57 -30.65 5.29 -306.97 -1.62 -32.27 16 10 C 0.44 22.04 7.50 87.65 0.66 22.70 16 11 O -0.61 -34.42 13.28 -3.06 -0.04 -34.46 16 12 C 0.05 1.80 5.25 85.55 0.45 2.25 16 13 N -0.50 -17.47 5.13 -874.93 -4.49 -21.96 16 14 C 0.03 1.05 5.43 86.53 0.47 1.52 16 15 C -0.11 -2.52 6.54 32.29 0.21 -2.31 16 16 C -0.07 -1.33 3.25 -10.97 -0.04 -1.37 16 17 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 18 C -0.12 -1.66 5.40 29.38 0.16 -1.50 16 19 C 0.10 1.28 5.41 85.95 0.46 1.74 16 20 N -0.59 -12.97 3.07 -842.45 -2.59 -15.56 16 21 C 0.59 15.52 7.53 86.66 0.65 16.17 16 22 O -0.59 -21.25 16.49 -4.04 -0.07 -21.32 16 23 C -0.31 -6.05 5.24 -20.15 -0.11 -6.15 16 24 C 0.09 1.29 9.53 85.65 0.82 2.11 16 25 N -0.31 -4.91 12.63 -56.27 -0.71 -5.62 16 26 N -0.45 -5.37 7.29 -56.32 -0.41 -5.78 16 27 H 0.46 2.27 8.96 -213.42 -1.91 0.36 16 28 C 0.13 2.02 12.01 84.27 1.01 3.03 16 29 C 0.13 3.42 5.89 85.35 0.50 3.92 16 30 C 0.06 1.56 2.12 43.01 0.09 1.65 16 31 H 0.04 0.92 7.28 -2.39 -0.02 0.90 16 32 H 0.28 14.38 8.31 -92.70 -0.77 13.61 16 33 H 0.40 20.26 7.90 -92.71 -0.73 19.53 16 34 H 0.07 2.34 7.68 -2.38 -0.02 2.32 16 35 H 0.10 3.55 7.32 -2.39 -0.02 3.53 16 36 H 0.07 3.10 6.01 -2.39 -0.01 3.09 16 37 H 0.03 1.14 8.05 -2.39 -0.02 1.12 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.66 7.18 -2.39 -0.02 1.64 16 40 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.05 0.91 7.14 -2.39 -0.02 0.90 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.10 1.18 4.26 -2.38 -0.01 1.17 16 44 H 0.22 1.69 7.13 -2.91 -0.02 1.66 16 45 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 46 H 0.08 1.74 8.13 -2.38 -0.02 1.72 16 47 H 0.06 2.05 5.97 -2.39 -0.01 2.04 16 Total: -1.00 -81.59 372.48 -2.60 -84.19 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -1.60 Total: 32.76 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: 6.63 Total: 24.94 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -9.54 Total: -131.97 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -0.11 Total: -55.78 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -81.59 -2.60 -84.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222309422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.826 kcal (2) G-P(sol) polarization free energy of solvation -81.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds