Wall clock time and date at job start Wed Apr 1 2020 05:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 119.99980 * 2 1 4 4 H 1.48503 * 109.47241 * 269.99809 * 3 2 1 5 5 H 1.48497 * 109.47231 * 29.99877 * 3 2 1 6 6 H 1.48508 * 109.47072 * 149.99857 * 3 2 1 7 7 C 1.38955 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00332 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00043 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99825 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00218 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47237 * 173.72893 * 12 10 9 14 14 C 1.46845 * 111.00126 * 169.39888 * 13 12 10 15 15 C 1.53038 * 109.52423 * 185.84163 * 14 13 12 16 16 C 1.53125 * 109.27545 * 300.81993 * 15 14 13 17 17 C 1.52998 * 109.52061 * 177.55757 * 16 15 14 18 18 N 1.46501 * 109.47245 * 65.32102 * 17 16 15 19 19 C 1.34773 * 120.00461 * 180.02562 * 18 17 16 20 20 O 1.21511 * 119.99914 * 359.97438 * 19 18 17 21 21 C 1.48156 * 120.00257 * 179.97438 * 19 18 17 22 22 C 1.39713 * 120.18297 * 179.72323 * 21 19 18 23 23 C 1.38832 * 117.89765 * 179.76603 * 22 21 19 24 24 C 1.38568 * 118.06683 * 0.51912 * 23 22 21 25 25 N 1.32170 * 120.06481 * 359.71095 * 24 23 22 26 26 N 1.28346 * 122.30755 * 0.02562 * 25 24 23 27 27 C 1.53119 * 109.16101 * 57.65935 * 16 15 14 28 28 C 1.46852 * 111.00118 * 293.61170 * 13 12 10 29 29 H 0.96995 * 120.00108 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00153 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46989 * 293.72634 * 12 10 9 32 32 H 1.08994 * 109.47105 * 53.72813 * 12 10 9 33 33 H 1.08998 * 109.46555 * 305.85433 * 14 13 12 34 34 H 1.09004 * 109.46392 * 65.82754 * 14 13 12 35 35 H 1.08998 * 109.50374 * 180.88473 * 15 14 13 36 36 H 1.09001 * 109.50604 * 60.76106 * 15 14 13 37 37 H 1.08999 * 109.57664 * 297.71802 * 16 15 14 38 38 H 1.08999 * 109.47138 * 185.31550 * 17 16 15 39 39 H 1.08999 * 109.47661 * 305.32210 * 17 16 15 40 40 H 0.97007 * 119.99436 * 359.97438 * 18 17 16 41 41 H 1.08004 * 121.05332 * 359.97438 * 22 21 19 42 42 H 1.08005 * 120.96315 * 180.23233 * 23 22 21 43 43 H 1.07999 * 119.96588 * 179.73116 * 24 23 22 44 44 H 1.08998 * 109.50519 * 182.40701 * 27 16 15 45 45 H 1.08998 * 109.53606 * 62.29826 * 27 16 15 46 46 H 1.08994 * 109.45963 * 294.17267 * 28 13 12 47 47 H 1.09003 * 109.46062 * 54.15362 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8630 0.0022 13 7 2.1913 -5.9755 -0.1480 14 6 1.5325 -7.2646 0.0982 15 6 2.5756 -8.3843 0.0769 16 6 3.2740 -8.3987 -1.2857 17 6 4.3600 -9.4764 -1.2922 18 7 3.7381 -10.7972 -1.1695 19 6 4.5059 -11.9046 -1.1523 20 8 5.7141 -11.8077 -1.2391 21 6 3.8770 -13.2403 -1.0277 22 6 4.6690 -14.3912 -1.0153 23 6 4.0305 -15.6178 -0.8914 24 6 2.6480 -15.6267 -0.7988 25 7 1.9753 -14.4892 -0.8236 26 7 2.5572 -13.3504 -0.9326 27 6 3.9106 -7.0293 -1.5387 28 6 2.8288 -5.9489 -1.4706 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3907 0.0005 31 1 0.7037 -4.9702 0.9428 32 1 0.5359 -4.8742 -0.8266 33 1 1.0434 -7.2425 1.0720 34 1 0.7887 -7.4464 -0.6777 35 1 2.0841 -9.3427 0.2440 36 1 3.3121 -8.2105 0.8615 37 1 2.5449 -8.6116 -2.0675 38 1 4.9188 -9.4234 -2.2266 39 1 5.0375 -9.3146 -0.4539 40 1 2.7736 -10.8745 -1.0998 41 1 5.7442 -14.3285 -1.0961 42 1 4.5948 -16.5385 -0.8726 43 1 2.1196 -16.5640 -0.7058 44 1 4.3728 -7.0196 -2.5258 45 1 4.6683 -6.8339 -0.7800 46 1 2.0789 -6.1369 -2.2390 47 1 3.2813 -4.9712 -1.6361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224921726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:25 Heat of formation + Delta-G solvation = -38.945262 kcal Electronic energy + Delta-G solvation = -29165.016690 eV Core-core repulsion = 24960.940773 eV Total energy + Delta-G solvation = -4204.075917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.22394 -40.87875 -40.37457 -39.27600 -36.68205 -35.85242 -34.44043 -34.14313 -33.47727 -33.17799 -31.73829 -29.74525 -27.69533 -26.43045 -25.68082 -25.31124 -24.13988 -22.90644 -22.07060 -21.00366 -20.71410 -19.85775 -19.43794 -18.40785 -17.74489 -17.63236 -16.95415 -16.83322 -16.75524 -16.50180 -16.25682 -15.86903 -15.76999 -15.51611 -15.28597 -15.16202 -14.92013 -14.77826 -14.23767 -14.06103 -13.96207 -13.77597 -13.45620 -13.31548 -13.07107 -12.84214 -12.64829 -12.56317 -12.40758 -12.13164 -12.09281 -11.73674 -11.59780 -11.43320 -11.33030 -11.27296 -11.21228 -11.17879 -10.87340 -10.24668 -10.21249 -9.97988 -9.13173 -8.45180 -5.93607 -0.61443 -0.27328 1.38267 1.41762 1.53494 1.54570 1.87044 2.08188 2.29484 2.57791 2.78474 2.81249 3.21810 3.40841 3.41565 3.59780 3.65840 3.76964 3.79734 3.88943 3.92941 4.14317 4.25892 4.29771 4.36678 4.39993 4.50658 4.57050 4.58595 4.63919 4.71044 4.76671 4.84301 4.87706 4.91795 4.99206 5.07910 5.14562 5.19714 5.23639 5.26943 5.42094 5.48680 5.93320 6.13853 6.30029 6.31715 6.63071 6.93186 7.15045 7.46724 7.59082 8.15400 8.72296 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.035118 B = 0.001579 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.131245 B =17723.354502 C =18324.009041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.332 4.332 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.441 3.559 11 O -0.614 6.614 12 C 0.058 3.942 13 N -0.536 5.536 14 C 0.055 3.945 15 C -0.105 4.105 16 C -0.087 4.087 17 C 0.130 3.870 18 N -0.696 5.696 19 C 0.572 3.428 20 O -0.561 6.561 21 C 0.007 3.993 22 C -0.078 4.078 23 C -0.099 4.099 24 C 0.060 3.940 25 N -0.275 5.275 26 N -0.233 5.233 27 C -0.098 4.098 28 C 0.058 3.942 29 H 0.277 0.723 30 H 0.395 0.605 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.418 0.582 41 H 0.170 0.830 42 H 0.204 0.796 43 H 0.218 0.782 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -33.891 -3.260 34.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.228 3.772 11 O -0.499 6.499 12 C -0.073 4.073 13 N -0.261 5.261 14 C -0.072 4.072 15 C -0.143 4.143 16 C -0.106 4.106 17 C 0.006 3.994 18 N -0.346 5.346 19 C 0.355 3.645 20 O -0.439 6.439 21 C -0.140 4.140 22 C -0.106 4.106 23 C -0.128 4.128 24 C -0.103 4.103 25 N -0.117 5.117 26 N -0.080 5.080 27 C -0.136 4.136 28 C -0.069 4.069 29 H 0.086 0.914 30 H 0.229 0.771 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.256 0.744 41 H 0.188 0.812 42 H 0.221 0.779 43 H 0.234 0.766 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.634 -32.792 -2.917 33.027 hybrid contribution 0.191 0.558 -0.517 0.785 sum 2.825 -32.234 -3.434 32.539 Atomic orbital electron populations 1.69672 1.06797 1.29205 1.50545 1.26013 0.96527 1.02322 0.96386 0.84941 0.77865 0.76991 0.78608 1.19659 1.19544 1.19889 1.19655 0.92659 0.84064 1.49805 0.90400 1.41951 1.09262 1.04710 1.65449 1.20820 0.88341 0.85934 0.82061 1.90479 1.15695 1.87819 1.55936 1.21712 0.93442 0.88732 1.03414 1.61465 1.31492 1.02147 1.30988 1.22197 0.95686 0.87613 1.01732 1.21628 0.98093 0.97915 0.96685 1.21357 0.97023 0.93344 0.98886 1.21438 0.95520 0.80029 1.02367 1.45852 1.11677 1.05436 1.71684 1.17846 0.85985 0.83842 0.76780 1.90797 1.14607 1.86945 1.51560 1.22746 0.93164 0.95763 1.02317 1.22716 1.03531 0.91731 0.92668 1.22988 0.95536 1.00015 0.94224 1.25227 0.93934 0.99719 0.91382 1.73071 1.32638 0.95475 1.10529 1.73143 1.08246 1.19389 1.07220 1.21438 0.97355 0.92563 1.02288 1.22049 0.96684 0.99789 0.88419 0.91366 0.77099 0.87313 0.91761 0.89897 0.93613 0.89365 0.92039 0.89152 0.90915 0.91661 0.74380 0.81242 0.77931 0.76555 0.90146 0.92298 0.94592 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.20 13.05 21.66 0.28 -49.91 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 0.99 43.52 29.55 68.60 2.03 45.54 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -30.01 5.29 -306.98 -1.62 -31.63 16 10 C 0.44 21.34 7.31 87.66 0.64 21.98 16 11 O -0.61 -34.39 14.29 -3.07 -0.04 -34.44 16 12 C 0.06 2.05 5.45 85.56 0.47 2.51 16 13 N -0.54 -17.28 4.35 -900.94 -3.92 -21.20 16 14 C 0.05 1.26 5.46 86.33 0.47 1.73 16 15 C -0.11 -2.06 5.22 30.65 0.16 -1.90 16 16 C -0.09 -1.65 2.29 -10.71 -0.02 -1.68 16 17 C 0.13 2.47 5.07 86.38 0.44 2.90 16 18 N -0.70 -12.56 5.30 -465.68 -2.47 -15.03 16 19 C 0.57 12.02 7.82 86.88 0.68 12.70 16 20 O -0.56 -14.92 16.39 -3.75 -0.06 -14.98 16 21 C 0.01 0.12 6.83 41.99 0.29 0.40 16 22 C -0.08 -0.86 9.73 22.77 0.22 -0.64 16 23 C -0.10 -0.41 10.20 22.49 0.23 -0.18 16 24 C 0.06 0.40 11.31 84.72 0.96 1.35 16 25 N -0.27 -4.34 11.51 -57.15 -0.66 -5.00 16 26 N -0.23 -4.29 10.75 -48.49 -0.52 -4.81 16 27 C -0.10 -2.46 5.38 30.65 0.16 -2.30 16 28 C 0.06 1.85 5.12 86.33 0.44 2.30 16 29 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 31 H 0.11 3.39 7.98 -2.39 -0.02 3.37 16 32 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 33 H 0.08 1.78 8.01 -2.39 -0.02 1.76 16 34 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.09 1.33 7.27 -2.39 -0.02 1.32 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.42 6.46 7.05 -92.70 -0.65 5.81 16 41 H 0.17 1.57 7.72 -2.91 -0.02 1.55 16 42 H 0.20 -1.00 8.06 -2.91 -0.02 -1.02 16 43 H 0.22 -0.43 8.06 -2.91 -0.02 -0.46 16 44 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.05 2.20 6.06 -2.39 -0.01 2.19 16 Total: -1.00 -78.13 390.97 -0.94 -79.07 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.37 Total: 31.73 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 6.41 Total: 20.65 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -8.90 Total: -127.58 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -0.11 Total: -49.42 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -78.13 -0.94 -79.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224921726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.125 kcal (2) G-P(sol) polarization free energy of solvation -78.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds