Wall clock time and date at job start Wed Apr 1 2020 04:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99958 * 2 1 4 4 H 1.48499 * 109.47379 * 239.99816 * 3 2 1 5 5 H 1.48494 * 109.47108 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47338 * 120.00221 * 3 2 1 7 7 C 1.37879 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00295 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.53041 * 109.45765 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.31045 * 178.62377 * 10 9 7 12 12 N 1.46930 * 108.77370 * 54.63558 * 11 10 9 13 13 C 1.34776 * 120.62908 * 126.36582 * 12 11 10 14 14 O 1.21354 * 120.00149 * 5.04661 * 13 12 11 15 15 C 1.49447 * 119.99805 * 185.04252 * 13 12 11 16 16 O 1.21350 * 119.99644 * 84.71176 * 15 13 12 17 17 N 1.34772 * 120.00446 * 264.98350 * 15 13 12 18 18 C 1.45303 * 119.74512 * 184.50115 * 17 15 13 19 19 C 1.52041 * 114.19629 * 112.56961 * 18 17 15 20 20 C 1.53476 * 110.91137 * 67.49535 * 19 18 17 21 21 N 1.47230 * 107.70349 * 277.35919 * 20 19 18 22 22 N 1.28325 * 127.63493 * 246.68254 * 21 20 19 23 23 N 1.28966 * 110.04224 * 177.48126 * 22 21 20 24 24 C 1.34193 * 108.94521 * 0.67288 * 23 22 21 25 25 C 1.34112 * 105.97281 * 0.28608 * 24 23 22 26 26 C 1.47424 * 119.73845 * 4.77614 * 17 15 13 27 27 C 1.46925 * 118.73707 * 306.64436 * 12 11 10 28 28 C 1.52757 * 109.00961 * 53.31019 * 27 12 11 29 29 H 0.96998 * 120.00274 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.45607 * 299.97008 * 9 7 2 31 31 H 1.09000 * 109.49996 * 58.67394 * 10 9 7 32 32 H 1.08997 * 109.50132 * 298.58063 * 10 9 7 33 33 H 1.08999 * 109.58960 * 294.85147 * 11 10 9 34 34 H 1.09002 * 109.70408 * 174.49275 * 11 10 9 35 35 H 1.09005 * 108.48190 * 233.86223 * 18 17 15 36 36 H 1.08996 * 108.47920 * 351.27364 * 18 17 15 37 37 H 1.09005 * 109.29112 * 307.07290 * 19 18 17 38 38 H 1.09003 * 109.11619 * 187.80945 * 19 18 17 39 39 H 1.09004 * 109.81198 * 157.81327 * 20 19 18 40 40 H 1.09001 * 109.81539 * 36.91493 * 20 19 18 41 41 H 1.08004 * 127.01288 * 180.30079 * 24 23 22 42 42 H 1.09004 * 109.97090 * 16.01166 * 26 17 15 43 43 H 1.08997 * 109.97501 * 137.33508 * 26 17 15 44 44 H 1.09005 * 109.58213 * 173.14639 * 27 12 11 45 45 H 1.09000 * 109.58563 * 293.56601 * 27 12 11 46 46 H 1.09001 * 109.56474 * 185.55207 * 28 27 12 47 47 H 1.08991 * 109.36314 * 65.49808 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4768 -4.9866 0.0353 12 7 0.5225 -5.0088 -1.0817 13 6 0.5124 -6.0345 -1.9560 14 8 1.2322 -6.9943 -1.7737 15 6 -0.3854 -5.9898 -3.1499 16 8 -0.0246 -5.4212 -4.1594 17 7 -1.5980 -6.5762 -3.1036 18 6 -2.4261 -6.6150 -4.2970 19 6 -2.6310 -8.0090 -4.8682 20 6 -3.4741 -8.8714 -3.9191 21 7 -2.5732 -9.4167 -2.8902 22 7 -2.2439 -10.6434 -2.7074 23 7 -1.3933 -10.7337 -1.7423 24 6 -1.1583 -9.5066 -1.2525 25 6 -1.9202 -8.6698 -1.9722 26 6 -2.0765 -7.1679 -1.8409 27 6 -0.4163 -3.8885 -1.2311 28 6 0.3702 -2.5791 -1.2484 29 1 -0.4850 0.8400 0.0004 30 1 0.6245 -2.5567 0.8907 31 1 2.8883 -3.5914 0.8782 32 1 2.8559 -3.6192 -0.9017 33 1 0.9372 -5.0713 0.9785 34 1 2.1737 -5.8190 -0.0630 35 1 -3.4007 -6.1910 -4.0552 36 1 -1.9615 -5.9907 -5.0602 37 1 -1.6610 -8.4835 -5.0168 38 1 -3.1408 -7.9299 -5.8284 39 1 -3.9374 -9.6871 -4.4743 40 1 -4.2440 -8.2593 -3.4492 41 1 -0.4916 -9.2460 -0.4438 42 1 -1.4763 -6.8025 -1.0076 43 1 -3.1251 -6.9148 -1.6850 44 1 -0.9665 -3.9951 -2.1660 45 1 -1.1134 -3.8818 -0.3932 46 1 -0.3223 -1.7374 -1.2596 47 1 0.9978 -2.5463 -2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262531672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:30 Heat of formation + Delta-G solvation = 44.128773 kcal Electronic energy + Delta-G solvation = -32026.152899 eV Core-core repulsion = 27825.679342 eV Total energy + Delta-G solvation = -4200.473556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.61342 -40.97242 -39.01364 -37.24086 -36.99166 -35.09038 -33.68014 -32.73241 -31.57432 -31.30802 -30.30870 -27.74120 -27.04044 -26.42824 -24.80762 -23.23380 -22.70956 -22.51012 -21.53575 -20.89516 -19.71115 -18.69643 -18.01916 -17.89172 -17.03908 -16.62722 -16.35609 -16.25743 -15.46111 -15.37549 -14.94208 -14.62595 -14.48082 -14.35656 -13.98715 -13.79545 -13.61280 -13.26766 -13.11919 -12.88965 -12.83881 -12.75906 -12.47508 -12.20690 -11.86001 -11.82840 -11.77482 -11.53900 -11.28012 -11.06033 -10.97364 -10.74774 -10.50277 -10.26881 -10.17660 -9.75669 -9.59344 -9.42389 -9.30941 -9.29506 -9.07345 -8.47509 -8.28752 -6.10165 -4.15876 1.26486 1.98926 2.03499 2.15091 2.43873 2.57173 3.26557 3.29338 3.31276 3.34803 3.87976 3.97296 4.06113 4.18438 4.22963 4.36158 4.49142 4.58902 4.76277 4.80117 4.94962 4.99545 5.18960 5.22990 5.32051 5.36528 5.45866 5.51658 5.60108 5.73879 5.84773 5.92843 5.97835 6.01136 6.11365 6.24448 6.31919 6.50116 6.64086 6.68903 6.88875 7.00184 7.13105 7.46940 7.58654 7.60798 7.82006 7.92257 8.01704 8.30770 8.32097 8.86944 9.49714 10.95619 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021142 B = 0.002817 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.050918 B = 9937.402654 C =10562.971728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.050 3.950 10 C -0.126 4.126 11 C 0.110 3.890 12 N -0.580 5.580 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.525 3.475 16 O -0.500 6.500 17 N -0.602 5.602 18 C 0.099 3.901 19 C -0.154 4.154 20 C 0.114 3.886 21 N -0.284 5.284 22 N -0.081 5.081 23 N -0.274 5.274 24 C -0.014 4.014 25 C -0.046 4.046 26 C 0.183 3.817 27 C 0.101 3.899 28 C -0.125 4.125 29 H 0.261 0.739 30 H 0.029 0.971 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.192 0.808 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.108 0.892 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 -13.578 -5.395 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.164 4.164 11 C -0.011 4.011 12 N -0.313 5.313 13 C 0.289 3.711 14 O -0.398 6.398 15 C 0.309 3.691 16 O -0.372 6.372 17 N -0.338 5.338 18 C -0.023 4.023 19 C -0.194 4.194 20 C -0.007 4.007 21 N -0.081 5.081 22 N -0.060 5.060 23 N -0.140 5.140 24 C -0.171 4.171 25 C -0.178 4.178 26 C 0.058 3.942 27 C -0.020 4.020 28 C -0.164 4.164 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.209 0.791 42 H 0.133 0.867 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.126 0.874 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.760 -15.081 -6.348 20.150 hybrid contribution 0.528 2.091 0.154 2.162 sum -11.231 -12.990 -6.195 18.255 Atomic orbital electron populations 1.69800 1.05857 1.26674 1.50804 1.24943 0.94889 0.99095 0.94939 0.86663 0.79650 0.83067 0.78677 1.20298 1.21299 1.20269 1.21148 0.92977 0.90478 1.50496 0.92661 1.18636 0.92587 0.91833 0.93813 1.22044 0.99039 0.93852 1.01443 1.21880 0.91611 1.00311 0.87289 1.48401 1.35859 1.20429 1.26643 1.19978 0.84446 0.83902 0.82759 1.90794 1.42620 1.32943 1.73482 1.20620 0.81146 0.77757 0.89597 1.90809 1.72420 1.41462 1.32551 1.47895 1.16951 1.57798 1.11111 1.21136 0.95854 0.96877 0.88469 1.22298 1.01893 0.95925 0.99251 1.22556 0.91113 0.99265 0.87731 1.47587 1.31695 1.05580 1.23253 1.78230 1.12700 1.00011 1.15086 1.75386 1.10368 1.22235 1.06020 1.23142 1.01846 0.88672 1.03420 1.22362 1.02111 0.96801 0.96572 1.20523 1.02479 0.84218 0.86967 1.22078 0.91602 0.87820 1.00550 1.21969 1.00252 0.94144 1.00000 0.92874 0.95246 0.91627 0.92712 0.91201 0.89913 0.90096 0.87610 0.90085 0.87276 0.86658 0.87610 0.79068 0.86738 0.87602 0.91974 0.90945 0.87437 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.52 11.30 55.43 0.63 -22.89 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -13.16 8.56 -34.44 -0.29 -13.46 16 8 H 0.06 1.42 7.74 -52.48 -0.41 1.02 16 9 C 0.05 1.11 2.07 -91.73 -0.19 0.92 16 10 C -0.13 -2.39 5.30 -26.61 -0.14 -2.53 16 11 C 0.11 1.78 6.42 -3.71 -0.02 1.76 16 12 N -0.58 -9.41 2.98 -173.53 -0.52 -9.93 16 13 C 0.51 8.43 5.48 -11.59 -0.06 8.36 16 14 O -0.52 -9.74 16.53 5.49 0.09 -9.65 16 15 C 0.53 8.00 5.44 -11.59 -0.06 7.93 16 16 O -0.50 -9.09 16.37 5.50 0.09 -9.00 16 17 N -0.60 -6.41 2.68 -175.83 -0.47 -6.88 16 18 C 0.10 0.75 5.72 -5.17 -0.03 0.72 16 19 C -0.15 -0.91 5.86 -26.97 -0.16 -1.07 16 20 C 0.11 0.61 6.62 -3.40 -0.02 0.59 16 21 N -0.28 -2.90 3.39 -56.32 -0.19 -3.09 16 22 N -0.08 -1.08 13.24 60.35 0.80 -0.28 16 23 N -0.27 -4.02 12.43 30.08 0.37 -3.65 16 24 C -0.01 -0.17 12.04 -17.97 -0.22 -0.39 16 25 C -0.05 -0.50 6.32 -82.15 -0.52 -1.02 16 26 C 0.18 1.60 6.00 -4.26 -0.03 1.57 16 27 C 0.10 1.65 6.33 -3.94 -0.02 1.63 16 28 C -0.13 -2.64 5.14 -26.84 -0.14 -2.78 16 29 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.32 7.03 -51.93 -0.37 0.95 16 35 H 0.08 0.37 8.03 -51.93 -0.42 -0.05 16 36 H 0.11 0.98 6.80 -51.93 -0.35 0.62 16 37 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 38 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 0.30 7.92 -51.93 -0.41 -0.11 16 41 H 0.19 2.12 8.06 -52.48 -0.42 1.70 16 42 H 0.11 1.07 6.52 -51.93 -0.34 0.73 16 43 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.95 6.31 -51.93 -0.33 0.62 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.11 2.53 6.03 -51.93 -0.31 2.21 16 47 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -33.39 376.49 -7.27 -40.65 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.71 Total: -0.09 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -2.00 Total: 3.76 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.62 Total: -46.71 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.18 Total: -18.66 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.39 -7.27 -40.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262531672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.783 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds