Wall clock time and date at job start Wed Apr 1 2020 04:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99958 * 2 1 4 4 H 1.48499 * 109.47379 * 239.99816 * 3 2 1 5 5 H 1.48494 * 109.47108 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47338 * 120.00221 * 3 2 1 7 7 C 1.37879 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00295 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.53041 * 109.45765 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.31045 * 178.62377 * 10 9 7 12 12 N 1.46930 * 108.77370 * 54.63558 * 11 10 9 13 13 C 1.34776 * 120.62908 * 126.36582 * 12 11 10 14 14 O 1.21354 * 120.00149 * 5.04661 * 13 12 11 15 15 C 1.49447 * 119.99805 * 185.04252 * 13 12 11 16 16 O 1.21350 * 119.99644 * 84.71176 * 15 13 12 17 17 N 1.34772 * 120.00446 * 264.98350 * 15 13 12 18 18 C 1.45303 * 119.74512 * 184.50115 * 17 15 13 19 19 C 1.52041 * 114.19629 * 112.56961 * 18 17 15 20 20 C 1.53476 * 110.91137 * 67.49535 * 19 18 17 21 21 N 1.47230 * 107.70349 * 277.35919 * 20 19 18 22 22 N 1.28325 * 127.63493 * 246.68254 * 21 20 19 23 23 N 1.28966 * 110.04224 * 177.48126 * 22 21 20 24 24 C 1.34193 * 108.94521 * 0.67288 * 23 22 21 25 25 C 1.34112 * 105.97281 * 0.28608 * 24 23 22 26 26 C 1.47424 * 119.73845 * 4.77614 * 17 15 13 27 27 C 1.46925 * 118.73707 * 306.64436 * 12 11 10 28 28 C 1.52757 * 109.00961 * 53.31019 * 27 12 11 29 29 H 0.96998 * 120.00274 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.45607 * 299.97008 * 9 7 2 31 31 H 1.09000 * 109.49996 * 58.67394 * 10 9 7 32 32 H 1.08997 * 109.50132 * 298.58063 * 10 9 7 33 33 H 1.08999 * 109.58960 * 294.85147 * 11 10 9 34 34 H 1.09002 * 109.70408 * 174.49275 * 11 10 9 35 35 H 1.09005 * 108.48190 * 233.86223 * 18 17 15 36 36 H 1.08996 * 108.47920 * 351.27364 * 18 17 15 37 37 H 1.09005 * 109.29112 * 307.07290 * 19 18 17 38 38 H 1.09003 * 109.11619 * 187.80945 * 19 18 17 39 39 H 1.09004 * 109.81198 * 157.81327 * 20 19 18 40 40 H 1.09001 * 109.81539 * 36.91493 * 20 19 18 41 41 H 1.08004 * 127.01288 * 180.30079 * 24 23 22 42 42 H 1.09004 * 109.97090 * 16.01166 * 26 17 15 43 43 H 1.08997 * 109.97501 * 137.33508 * 26 17 15 44 44 H 1.09005 * 109.58213 * 173.14639 * 27 12 11 45 45 H 1.09000 * 109.58563 * 293.56601 * 27 12 11 46 46 H 1.09001 * 109.56474 * 185.55207 * 28 27 12 47 47 H 1.08991 * 109.36314 * 65.49808 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4768 -4.9866 0.0353 12 7 0.5225 -5.0088 -1.0817 13 6 0.5124 -6.0345 -1.9560 14 8 1.2322 -6.9943 -1.7737 15 6 -0.3854 -5.9898 -3.1499 16 8 -0.0246 -5.4212 -4.1594 17 7 -1.5980 -6.5762 -3.1036 18 6 -2.4261 -6.6150 -4.2970 19 6 -2.6310 -8.0090 -4.8682 20 6 -3.4741 -8.8714 -3.9191 21 7 -2.5732 -9.4167 -2.8902 22 7 -2.2439 -10.6434 -2.7074 23 7 -1.3933 -10.7337 -1.7423 24 6 -1.1583 -9.5066 -1.2525 25 6 -1.9202 -8.6698 -1.9722 26 6 -2.0765 -7.1679 -1.8409 27 6 -0.4163 -3.8885 -1.2311 28 6 0.3702 -2.5791 -1.2484 29 1 -0.4850 0.8400 0.0004 30 1 0.6245 -2.5567 0.8907 31 1 2.8883 -3.5914 0.8782 32 1 2.8559 -3.6192 -0.9017 33 1 0.9372 -5.0713 0.9785 34 1 2.1737 -5.8190 -0.0630 35 1 -3.4007 -6.1910 -4.0552 36 1 -1.9615 -5.9907 -5.0602 37 1 -1.6610 -8.4835 -5.0168 38 1 -3.1408 -7.9299 -5.8284 39 1 -3.9374 -9.6871 -4.4743 40 1 -4.2440 -8.2593 -3.4492 41 1 -0.4916 -9.2460 -0.4438 42 1 -1.4763 -6.8025 -1.0076 43 1 -3.1251 -6.9148 -1.6850 44 1 -0.9665 -3.9951 -2.1660 45 1 -1.1134 -3.8818 -0.3932 46 1 -0.3223 -1.7374 -1.2596 47 1 0.9978 -2.5463 -2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262531672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:29 Heat of formation + Delta-G solvation = 21.117244 kcal Electronic energy + Delta-G solvation = -32027.150753 eV Core-core repulsion = 27825.679342 eV Total energy + Delta-G solvation = -4201.471411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.46062 -42.15436 -40.21515 -38.52926 -38.10901 -35.87006 -35.40238 -33.51017 -33.10991 -32.30485 -31.82284 -28.77689 -27.96714 -27.69987 -26.00993 -24.51247 -24.02113 -23.60597 -22.63803 -21.62397 -21.07084 -19.87174 -19.16351 -18.76091 -18.39956 -18.02422 -17.69225 -17.17845 -16.56361 -16.38566 -16.22760 -16.02404 -15.48268 -15.18123 -15.04218 -14.95911 -14.85600 -14.55988 -14.39725 -14.24935 -13.98323 -13.78211 -13.38153 -13.31301 -13.19808 -12.90617 -12.80519 -12.74416 -12.51987 -12.48639 -12.39308 -12.14695 -11.93482 -11.89659 -11.47146 -11.05271 -11.03521 -10.93927 -10.71202 -10.39626 -10.38145 -10.17188 -9.75244 -8.07420 -6.18750 0.42579 0.85017 1.03793 1.30061 1.41380 1.43125 1.44693 1.50941 1.52052 2.21431 2.45224 2.97324 3.19875 3.20192 3.41404 3.59418 3.62259 3.88347 3.97742 4.07583 4.10894 4.23017 4.26003 4.30931 4.40080 4.42966 4.45426 4.53116 4.57348 4.66541 4.77562 4.79419 4.82578 4.94450 5.00304 5.11946 5.15335 5.18591 5.19831 5.38069 5.45759 5.60269 5.64125 5.68658 6.00340 6.09231 6.15479 6.41414 6.52194 6.68012 6.89592 7.40899 7.48536 8.95960 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021142 B = 0.002817 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.050918 B = 9937.402654 C =10562.971728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.021 3.979 3 Si 0.943 3.057 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.044 0.956 9 C 0.048 3.952 10 C -0.118 4.118 11 C 0.116 3.884 12 N -0.578 5.578 13 C 0.508 3.492 14 O -0.546 6.546 15 C 0.523 3.477 16 O -0.540 6.540 17 N -0.587 5.587 18 C 0.089 3.911 19 C -0.144 4.144 20 C 0.103 3.897 21 N -0.273 5.273 22 N -0.104 5.104 23 N -0.314 5.314 24 C -0.035 4.035 25 C -0.041 4.041 26 C 0.181 3.819 27 C 0.115 3.885 28 C -0.117 4.117 29 H 0.262 0.738 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.042 0.958 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.147 0.853 41 H 0.196 0.804 42 H 0.110 0.890 43 H 0.157 0.843 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.681 -13.612 -5.541 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.769 3.231 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.063 0.937 9 C 0.030 3.970 10 C -0.156 4.156 11 C -0.005 4.005 12 N -0.311 5.311 13 C 0.290 3.710 14 O -0.425 6.425 15 C 0.306 3.694 16 O -0.416 6.416 17 N -0.321 5.321 18 C -0.032 4.032 19 C -0.183 4.183 20 C -0.015 4.015 21 N -0.071 5.071 22 N -0.083 5.083 23 N -0.179 5.179 24 C -0.193 4.193 25 C -0.174 4.174 26 C 0.057 3.943 27 C -0.006 4.006 28 C -0.156 4.156 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.164 0.836 39 H 0.152 0.848 40 H 0.164 0.836 41 H 0.213 0.787 42 H 0.128 0.872 43 H 0.174 0.826 44 H 0.095 0.905 45 H 0.116 0.884 46 H 0.102 0.898 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -14.501 -15.148 -6.498 21.954 hybrid contribution 1.355 2.119 0.160 2.520 sum -13.147 -13.029 -6.338 19.565 Atomic orbital electron populations 1.69889 1.06539 1.27177 1.51101 1.25548 0.95713 1.01628 0.94908 0.85852 0.78652 0.80109 0.78439 1.20604 1.20734 1.19893 1.21522 0.92878 0.92430 1.50642 0.93732 1.18600 0.92990 0.91717 0.93724 1.21905 0.98508 0.94466 1.00767 1.21835 0.91840 0.98333 0.88512 1.48385 1.35774 1.20268 1.26688 1.20310 0.84343 0.83431 0.82876 1.90780 1.43630 1.33894 1.74156 1.20389 0.82294 0.78419 0.88337 1.90798 1.73558 1.43850 1.33434 1.47988 1.15382 1.55759 1.12974 1.21532 0.96959 0.97896 0.86834 1.22263 1.00501 0.94460 1.01057 1.23119 0.90918 1.00320 0.87109 1.48004 1.31157 1.04668 1.23233 1.78128 1.13261 1.01665 1.15291 1.75322 1.11675 1.23707 1.07203 1.23401 1.02758 0.88778 1.04355 1.22568 1.01282 0.97562 0.95989 1.20895 1.05180 0.82461 0.85735 1.21910 0.91068 0.85201 1.02459 1.21724 0.99550 0.96187 0.98095 0.92867 0.96379 0.90956 0.94741 0.88563 0.89582 0.85430 0.89473 0.93954 0.83613 0.84832 0.83564 0.78700 0.87160 0.82577 0.90498 0.88412 0.89774 0.96579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.95 11.30 21.45 0.24 -47.71 16 2 C 0.02 1.12 5.30 84.66 0.45 1.57 16 3 Si 0.94 41.96 29.54 68.60 2.03 43.99 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.54 -28.01 8.56 25.60 0.22 -27.79 16 8 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 9 C 0.05 2.17 2.07 -11.51 -0.02 2.14 16 10 C -0.12 -4.52 5.30 30.67 0.16 -4.36 16 11 C 0.12 3.61 6.42 86.36 0.55 4.16 16 12 N -0.58 -18.08 2.98 -821.30 -2.45 -20.52 16 13 C 0.51 16.47 5.48 87.27 0.48 16.94 16 14 O -0.55 -20.32 16.53 -3.26 -0.05 -20.37 16 15 C 0.52 15.34 5.44 87.27 0.47 15.81 16 16 O -0.54 -19.62 16.37 -3.25 -0.05 -19.68 16 17 N -0.59 -10.88 2.68 -828.57 -2.22 -13.10 16 18 C 0.09 1.01 5.72 86.29 0.49 1.51 16 19 C -0.14 -1.20 5.86 30.44 0.18 -1.03 16 20 C 0.10 0.67 6.62 86.40 0.57 1.24 16 21 N -0.27 -4.91 3.39 -332.11 -1.13 -6.03 16 22 N -0.10 -2.69 13.24 37.02 0.49 -2.20 16 23 N -0.31 -9.26 12.43 -58.75 -0.73 -9.99 16 24 C -0.04 -0.87 12.04 83.39 1.00 0.13 16 25 C -0.04 -0.79 6.32 41.38 0.26 -0.53 16 26 C 0.18 2.50 6.00 85.74 0.51 3.01 16 27 C 0.12 3.58 6.33 86.22 0.55 4.13 16 28 C -0.12 -4.96 5.14 30.53 0.16 -4.80 16 29 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 30 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.09 2.67 7.03 -2.39 -0.02 2.65 16 35 H 0.13 0.36 8.03 -2.38 -0.02 0.35 16 36 H 0.09 1.42 6.80 -2.39 -0.02 1.40 16 37 H 0.04 0.72 8.07 -2.38 -0.02 0.70 16 38 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.13 0.46 8.14 -2.38 -0.02 0.44 16 40 H 0.15 -0.14 7.92 -2.39 -0.02 -0.16 16 41 H 0.20 4.38 8.06 -2.91 -0.02 4.35 16 42 H 0.11 1.71 6.52 -2.38 -0.02 1.69 16 43 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.08 2.19 6.31 -2.38 -0.02 2.18 16 45 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.08 3.99 6.03 -2.39 -0.01 3.98 16 47 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -77.29 376.49 3.16 -74.13 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.99 Total: 9.35 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 6.04 Total: 12.15 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -5.79 Total: -99.57 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.11 Total: -40.05 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -77.29 3.16 -74.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262531672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.248 kcal (2) G-P(sol) polarization free energy of solvation -77.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds