Wall clock time and date at job start Wed Apr 1 2020 04:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86789 * 120.00093 * 2 1 4 4 H 1.48498 * 109.47293 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47361 * 300.00063 * 3 2 1 6 6 H 1.48502 * 109.47528 * 60.00339 * 3 2 1 7 7 C 1.38809 * 119.99481 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99653 * 197.02156 * 7 2 1 9 9 N 1.36942 * 120.00540 * 17.02566 * 7 2 1 10 10 C 1.47081 * 120.88110 * 206.58165 * 9 7 2 11 11 C 1.53237 * 108.52095 * 231.15947 * 10 9 7 12 12 N 1.46899 * 109.33809 * 306.17350 * 11 10 9 13 13 C 1.46907 * 110.99667 * 187.25345 * 12 11 10 14 14 C 1.52998 * 109.46963 * 170.00029 * 13 12 11 15 15 N 1.46502 * 109.47270 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00131 * 179.97438 * 15 14 13 17 17 O 1.21528 * 119.99913 * 0.02562 * 16 15 14 18 18 C 1.48010 * 120.00117 * 179.97438 * 16 15 14 19 19 C 1.39863 * 120.46386 * 179.97438 * 18 16 15 20 20 C 1.38453 * 118.35556 * 180.02562 * 19 18 16 21 21 C 1.39294 * 119.19097 * 0.02562 * 20 19 18 22 22 C 1.48336 * 119.57282 * 179.97438 * 21 20 19 23 23 N 1.34775 * 120.00233 * 179.97438 * 22 21 20 24 24 O 1.21499 * 119.99890 * 0.02562 * 22 21 20 25 25 N 1.32711 * 120.85913 * 359.97438 * 21 20 19 26 26 C 1.31421 * 121.80230 * 0.02562 * 25 21 20 27 27 C 1.46898 * 111.27267 * 63.10308 * 12 11 10 28 28 C 1.47077 * 120.87967 * 26.55704 * 9 7 2 29 29 H 0.96999 * 119.99751 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.62563 * 111.45034 * 10 9 7 31 31 H 1.09001 * 109.78865 * 350.96774 * 10 9 7 32 32 H 1.08997 * 109.49284 * 186.21401 * 11 10 9 33 33 H 1.08998 * 109.49415 * 66.12997 * 11 10 9 34 34 H 1.08996 * 109.47172 * 50.00115 * 13 12 11 35 35 H 1.08997 * 109.47168 * 289.99437 * 13 12 11 36 36 H 1.09000 * 109.47532 * 59.99801 * 14 13 12 37 37 H 1.09003 * 109.47080 * 299.99866 * 14 13 12 38 38 H 0.97000 * 119.99383 * 359.97438 * 15 14 13 39 39 H 1.07995 * 120.82246 * 0.28235 * 19 18 16 40 40 H 1.08007 * 120.40185 * 179.97438 * 20 19 18 41 41 H 0.96997 * 119.99878 * 0.02562 * 23 22 21 42 42 H 0.97000 * 120.00031 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.64256 * 180.02562 * 26 25 21 44 44 H 1.09006 * 109.49024 * 56.85579 * 27 12 11 45 45 H 1.08996 * 109.49648 * 176.93072 * 27 12 11 46 46 H 1.09006 * 109.62837 * 248.54965 * 28 9 7 47 47 H 1.09003 * 109.62959 * 9.12922 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2228 0.2733 9 7 1.3705 -2.3620 -0.3483 10 6 1.8308 -3.6612 0.1651 11 6 2.0022 -4.6192 -1.0185 12 7 0.7547 -4.6639 -1.7928 13 6 0.8183 -5.6981 -2.8342 14 6 -0.5693 -5.8872 -3.4504 15 7 -0.5058 -6.9181 -4.4894 16 6 -1.6173 -7.2553 -5.1730 17 8 -2.6722 -6.7039 -4.9278 18 6 -1.5531 -8.2965 -6.2230 19 6 -2.7007 -8.6543 -6.9379 20 6 -2.5910 -9.6339 -7.9102 21 6 -1.3514 -10.2257 -8.1415 22 6 -1.2244 -11.2764 -9.1808 23 7 -0.0290 -11.8545 -9.4121 24 8 -2.1977 -11.6154 -9.8242 25 7 -0.2826 -9.8617 -7.4442 26 6 -0.3453 -8.9362 -6.5132 27 6 0.4400 -3.3514 -2.3727 28 6 0.2046 -2.3415 -1.2446 29 1 -0.4850 0.8401 0.0004 30 1 1.0919 -4.0637 0.8580 31 1 2.7848 -3.5383 0.6779 32 1 2.2362 -5.6171 -0.6477 33 1 2.8136 -4.2681 -1.6561 34 1 1.1511 -6.6377 -2.3933 35 1 1.5209 -5.3910 -3.6088 36 1 -0.9023 -4.9476 -3.8913 37 1 -1.2721 -6.1943 -2.6759 38 1 0.3362 -7.3580 -4.6853 39 1 -3.6481 -8.1754 -6.7394 40 1 -3.4562 -9.9360 -8.4818 41 1 0.7481 -11.5836 -8.8987 42 1 0.0540 -12.5418 -10.0915 43 1 0.5466 -8.6667 -5.9670 44 1 1.2732 -3.0180 -2.9915 45 1 -0.4589 -3.4300 -2.9841 46 1 -0.6907 -2.6172 -0.6872 47 1 0.0842 -1.3434 -1.6659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265266531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:16 Heat of formation + Delta-G solvation = 2.367412 kcal Electronic energy + Delta-G solvation = -29024.799929 eV Core-core repulsion = 24822.515465 eV Total energy + Delta-G solvation = -4202.284465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38572 -40.00798 -38.96062 -38.23101 -35.63612 -34.42730 -34.15075 -32.98534 -32.32599 -31.37698 -29.98749 -29.01953 -26.52271 -25.42223 -24.25175 -23.36049 -22.66826 -22.02928 -21.45093 -20.92217 -19.16646 -18.94444 -18.21118 -17.71711 -16.94029 -16.70557 -15.98853 -15.90675 -15.61579 -15.54264 -15.13662 -14.93451 -14.69144 -14.40892 -14.25328 -13.99374 -13.78327 -13.58537 -13.55722 -13.45571 -13.19648 -12.96339 -12.59987 -11.73317 -11.48357 -11.40716 -11.10392 -11.04643 -10.78142 -10.68742 -10.58079 -10.46626 -10.34421 -10.26971 -10.09222 -10.08964 -9.88890 -9.78848 -9.66079 -9.28756 -8.53533 -7.95413 -6.69502 -5.80087 -3.21476 -0.32246 0.55107 1.88701 2.64627 2.65142 2.75890 3.31793 3.35608 3.43580 3.45481 3.48996 4.08437 4.12396 4.27183 4.34383 4.42182 4.48889 4.55431 4.85727 4.99569 5.06126 5.33820 5.36822 5.38147 5.41487 5.42129 5.74731 5.79155 5.84668 5.85946 5.93895 6.04400 6.11746 6.16638 6.18241 6.27924 6.49439 6.64186 6.66207 6.88681 7.01816 7.08108 7.19942 7.47571 7.58978 7.63483 7.66094 7.78679 7.79933 8.41255 9.19090 9.82430 10.40599 11.28772 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026972 B = 0.001595 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.880528 B =17554.194578 C =17888.163734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.044 3.956 14 C 0.120 3.880 15 N -0.719 5.719 16 C 0.559 3.441 17 O -0.522 6.522 18 C -0.157 4.157 19 C -0.021 4.021 20 C -0.114 4.114 21 C 0.091 3.909 22 C 0.577 3.423 23 N -0.833 5.833 24 O -0.532 6.532 25 N -0.461 5.461 26 C 0.132 3.868 27 C 0.031 3.969 28 C 0.177 3.823 29 H 0.254 0.746 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.029 0.971 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.398 0.602 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.413 0.587 42 H 0.407 0.593 43 H 0.168 0.832 44 H 0.026 0.974 45 H 0.064 0.936 46 H 0.028 0.972 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.291 -23.042 -16.338 28.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.021 3.979 11 C -0.083 4.083 12 N -0.254 5.254 13 C -0.085 4.085 14 C -0.003 4.003 15 N -0.371 5.371 16 C 0.344 3.656 17 O -0.399 6.399 18 C -0.163 4.163 19 C -0.047 4.047 20 C -0.135 4.135 21 C -0.047 4.047 22 C 0.360 3.640 23 N -0.396 5.396 24 O -0.407 6.407 25 N -0.172 5.172 26 C -0.029 4.029 27 C -0.098 4.098 28 C 0.051 3.949 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.233 0.767 39 H 0.177 0.823 40 H 0.175 0.825 41 H 0.243 0.757 42 H 0.238 0.762 43 H 0.185 0.815 44 H 0.045 0.955 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.129 -23.102 -16.312 28.281 hybrid contribution 1.218 1.146 -0.455 1.733 sum 1.348 -21.957 -16.768 27.660 Atomic orbital electron populations 1.70040 1.05202 1.25416 1.54019 1.25030 0.95310 0.98376 1.01015 0.86231 0.79283 0.84000 0.77302 1.20332 1.21591 1.21689 1.19230 0.92600 0.84782 1.41624 0.91589 1.44129 1.34143 1.01238 1.52356 1.20974 0.97889 0.86501 0.92516 1.22628 0.89206 0.99550 0.96905 1.61875 1.34747 1.05787 1.23020 1.22202 0.94800 0.97135 0.94379 1.21485 0.98514 0.90758 0.89579 1.45863 1.11116 1.41453 1.38691 1.17955 0.84193 0.82249 0.81237 1.90838 1.29118 1.53428 1.66492 1.21279 0.95942 0.99602 0.99447 1.21853 0.99101 0.92906 0.90861 1.22175 0.98762 0.95187 0.97385 1.21266 0.90467 0.96831 0.96118 1.17867 0.83524 0.80770 0.81825 1.43635 1.11236 1.42534 1.42240 1.90858 1.37780 1.63089 1.48994 1.67504 1.30638 1.13277 1.05831 1.22940 0.96652 0.90411 0.92882 1.23015 0.98830 0.89176 0.98816 1.20872 0.89018 0.96598 0.88386 0.93621 0.95595 0.92531 0.91934 0.95301 0.90742 0.94865 0.90619 0.89953 0.76709 0.82334 0.82456 0.75652 0.76178 0.81527 0.95544 0.91761 0.95414 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 11.15 55.49 0.62 -25.45 16 2 C 0.00 0.03 4.93 -17.43 -0.09 -0.05 16 3 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.25 -6.87 9.63 -15.06 -0.15 -7.01 16 8 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 9 N -0.60 -14.79 3.04 -172.01 -0.52 -15.31 16 10 C 0.15 3.04 6.69 -3.60 -0.02 3.01 16 11 C 0.05 0.77 5.62 -3.70 -0.02 0.75 16 12 N -0.53 -8.64 4.63 -234.33 -1.08 -9.72 16 13 C 0.04 0.52 5.08 -3.82 -0.02 0.50 16 14 C 0.12 1.40 5.60 -4.04 -0.02 1.37 16 15 N -0.72 -6.36 5.51 -61.20 -0.34 -6.69 16 16 C 0.56 5.91 7.79 -12.26 -0.10 5.82 16 17 O -0.52 -7.66 16.41 5.34 0.09 -7.57 16 18 C -0.16 -1.28 5.90 -104.73 -0.62 -1.90 16 19 C -0.02 -0.16 9.71 -38.89 -0.38 -0.54 16 20 C -0.11 -0.86 9.62 -39.11 -0.38 -1.24 16 21 C 0.09 0.72 6.75 -82.94 -0.56 0.16 16 22 C 0.58 4.70 8.09 -12.11 -0.10 4.61 16 23 N -0.83 -3.84 8.86 30.64 0.27 -3.57 16 24 O -0.53 -6.00 17.15 5.37 0.09 -5.91 16 25 N -0.46 -3.25 9.52 -9.48 -0.09 -3.34 16 26 C 0.13 0.84 10.71 -17.17 -0.18 0.65 16 27 C 0.03 0.57 5.46 -3.70 -0.02 0.55 16 28 C 0.18 4.21 5.42 -3.61 -0.02 4.19 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 32 H 0.06 0.86 7.99 -51.93 -0.41 0.45 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.74 7.97 -51.93 -0.41 0.33 16 35 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 36 H 0.08 1.02 6.40 -51.93 -0.33 0.69 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.40 2.18 6.53 -40.82 -0.27 1.91 16 39 H 0.16 1.16 7.73 -52.49 -0.41 0.76 16 40 H 0.16 1.04 7.63 -52.48 -0.40 0.64 16 41 H 0.41 1.30 8.15 -40.82 -0.33 0.97 16 42 H 0.41 1.20 8.93 -40.82 -0.36 0.84 16 43 H 0.17 0.54 6.41 -52.49 -0.34 0.20 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 1.10 6.16 -51.93 -0.32 0.78 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 2.35 6.12 -51.93 -0.32 2.04 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -34.77 387.18 -9.23 -44.00 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.40 Total: 0.41 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -2.67 Total: 10.86 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -1.14 Total: -64.09 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.18 Total: -13.48 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.77 -9.23 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265266531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.366 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds