Wall clock time and date at job start Wed Apr 1 2020 04:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86789 * 120.00093 * 2 1 4 4 H 1.48498 * 109.47293 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47361 * 300.00063 * 3 2 1 6 6 H 1.48502 * 109.47528 * 60.00339 * 3 2 1 7 7 C 1.38809 * 119.99481 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99653 * 197.02156 * 7 2 1 9 9 N 1.36942 * 120.00540 * 17.02566 * 7 2 1 10 10 C 1.47081 * 120.88110 * 206.58165 * 9 7 2 11 11 C 1.53237 * 108.52095 * 231.15947 * 10 9 7 12 12 N 1.46899 * 109.33809 * 306.17350 * 11 10 9 13 13 C 1.46907 * 110.99667 * 187.25345 * 12 11 10 14 14 C 1.52998 * 109.46963 * 170.00029 * 13 12 11 15 15 N 1.46502 * 109.47270 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00131 * 179.97438 * 15 14 13 17 17 O 1.21528 * 119.99913 * 0.02562 * 16 15 14 18 18 C 1.48010 * 120.00117 * 179.97438 * 16 15 14 19 19 C 1.39863 * 120.46386 * 179.97438 * 18 16 15 20 20 C 1.38453 * 118.35556 * 180.02562 * 19 18 16 21 21 C 1.39294 * 119.19097 * 0.02562 * 20 19 18 22 22 C 1.48336 * 119.57282 * 179.97438 * 21 20 19 23 23 N 1.34775 * 120.00233 * 179.97438 * 22 21 20 24 24 O 1.21499 * 119.99890 * 0.02562 * 22 21 20 25 25 N 1.32711 * 120.85913 * 359.97438 * 21 20 19 26 26 C 1.31421 * 121.80230 * 0.02562 * 25 21 20 27 27 C 1.46898 * 111.27267 * 63.10308 * 12 11 10 28 28 C 1.47077 * 120.87967 * 26.55704 * 9 7 2 29 29 H 0.96999 * 119.99751 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.62563 * 111.45034 * 10 9 7 31 31 H 1.09001 * 109.78865 * 350.96774 * 10 9 7 32 32 H 1.08997 * 109.49284 * 186.21401 * 11 10 9 33 33 H 1.08998 * 109.49415 * 66.12997 * 11 10 9 34 34 H 1.08996 * 109.47172 * 50.00115 * 13 12 11 35 35 H 1.08997 * 109.47168 * 289.99437 * 13 12 11 36 36 H 1.09000 * 109.47532 * 59.99801 * 14 13 12 37 37 H 1.09003 * 109.47080 * 299.99866 * 14 13 12 38 38 H 0.97000 * 119.99383 * 359.97438 * 15 14 13 39 39 H 1.07995 * 120.82246 * 0.28235 * 19 18 16 40 40 H 1.08007 * 120.40185 * 179.97438 * 20 19 18 41 41 H 0.96997 * 119.99878 * 0.02562 * 23 22 21 42 42 H 0.97000 * 120.00031 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.64256 * 180.02562 * 26 25 21 44 44 H 1.09006 * 109.49024 * 56.85579 * 27 12 11 45 45 H 1.08996 * 109.49648 * 176.93072 * 27 12 11 46 46 H 1.09006 * 109.62837 * 248.54965 * 28 9 7 47 47 H 1.09003 * 109.62959 * 9.12922 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2228 0.2733 9 7 1.3705 -2.3620 -0.3483 10 6 1.8308 -3.6612 0.1651 11 6 2.0022 -4.6192 -1.0185 12 7 0.7547 -4.6639 -1.7928 13 6 0.8183 -5.6981 -2.8342 14 6 -0.5693 -5.8872 -3.4504 15 7 -0.5058 -6.9181 -4.4894 16 6 -1.6173 -7.2553 -5.1730 17 8 -2.6722 -6.7039 -4.9278 18 6 -1.5531 -8.2965 -6.2230 19 6 -2.7007 -8.6543 -6.9379 20 6 -2.5910 -9.6339 -7.9102 21 6 -1.3514 -10.2257 -8.1415 22 6 -1.2244 -11.2764 -9.1808 23 7 -0.0290 -11.8545 -9.4121 24 8 -2.1977 -11.6154 -9.8242 25 7 -0.2826 -9.8617 -7.4442 26 6 -0.3453 -8.9362 -6.5132 27 6 0.4400 -3.3514 -2.3727 28 6 0.2046 -2.3415 -1.2446 29 1 -0.4850 0.8401 0.0004 30 1 1.0919 -4.0637 0.8580 31 1 2.7848 -3.5383 0.6779 32 1 2.2362 -5.6171 -0.6477 33 1 2.8136 -4.2681 -1.6561 34 1 1.1511 -6.6377 -2.3933 35 1 1.5209 -5.3910 -3.6088 36 1 -0.9023 -4.9476 -3.8913 37 1 -1.2721 -6.1943 -2.6759 38 1 0.3362 -7.3580 -4.6853 39 1 -3.6481 -8.1754 -6.7394 40 1 -3.4562 -9.9360 -8.4818 41 1 0.7481 -11.5836 -8.8987 42 1 0.0540 -12.5418 -10.0915 43 1 0.5466 -8.6667 -5.9670 44 1 1.2732 -3.0180 -2.9915 45 1 -0.4589 -3.4300 -2.9841 46 1 -0.6907 -2.6172 -0.6872 47 1 0.0842 -1.3434 -1.6659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265266531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:15 Heat of formation + Delta-G solvation = -27.007144 kcal Electronic energy + Delta-G solvation = -29026.073706 eV Core-core repulsion = 24822.515465 eV Total energy + Delta-G solvation = -4203.558241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.01251 -40.78752 -39.82955 -39.46649 -36.90387 -35.55296 -34.99351 -33.58254 -33.43462 -32.70820 -31.62977 -30.25207 -27.86256 -26.45568 -24.95965 -24.76060 -24.24973 -22.88475 -22.50589 -21.65999 -20.81252 -19.53689 -18.94134 -18.66773 -18.33073 -17.49960 -17.03425 -16.76874 -16.60175 -16.25508 -16.24010 -15.93996 -15.84888 -15.69965 -15.30901 -15.17456 -15.12957 -14.86924 -14.62393 -14.46214 -14.28038 -14.04918 -13.82219 -13.20367 -13.00076 -12.81966 -12.63724 -12.55304 -12.20290 -12.01468 -11.84287 -11.70465 -11.55587 -11.52246 -11.34668 -11.18154 -10.80376 -10.76296 -10.59313 -10.50182 -10.15044 -9.27409 -8.67538 -7.87253 -5.31811 -0.94836 0.00132 1.23090 1.46030 1.47776 1.58296 1.84054 1.92877 2.21694 2.51076 2.70791 2.98381 3.07999 3.28545 3.49868 3.63455 3.69410 3.75262 3.80105 3.88728 3.97484 4.10769 4.31864 4.37586 4.49555 4.50390 4.57693 4.67163 4.73475 4.77461 4.81644 4.87243 4.95415 5.01596 5.07340 5.20785 5.23669 5.28229 5.39548 5.62212 5.69670 5.74315 6.15786 6.17537 6.25474 6.37564 6.38692 6.50636 7.04486 7.13772 7.15797 7.85202 8.38797 9.19661 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026972 B = 0.001595 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.880528 B =17554.194578 C =17888.163734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.054 4.054 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.614 5.614 10 C 0.140 3.860 11 C 0.059 3.941 12 N -0.543 5.543 13 C 0.052 3.948 14 C 0.128 3.872 15 N -0.701 5.701 16 C 0.561 3.439 17 O -0.571 6.571 18 C -0.165 4.165 19 C -0.023 4.023 20 C -0.118 4.118 21 C 0.086 3.914 22 C 0.574 3.426 23 N -0.812 5.812 24 O -0.570 6.570 25 N -0.458 5.458 26 C 0.144 3.856 27 C 0.050 3.950 28 C 0.183 3.817 29 H 0.249 0.751 30 H 0.014 0.986 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.030 0.970 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.418 0.582 39 H 0.157 0.843 40 H 0.161 0.839 41 H 0.423 0.577 42 H 0.416 0.584 43 H 0.204 0.796 44 H 0.024 0.976 45 H 0.077 0.923 46 H -0.005 1.005 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 -25.088 -17.256 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.391 4.391 8 H 0.088 0.912 9 N -0.338 5.338 10 C 0.014 3.986 11 C -0.070 4.070 12 N -0.269 5.269 13 C -0.076 4.076 14 C 0.004 3.996 15 N -0.354 5.354 16 C 0.347 3.653 17 O -0.451 6.451 18 C -0.171 4.171 19 C -0.050 4.050 20 C -0.139 4.139 21 C -0.051 4.051 22 C 0.357 3.643 23 N -0.376 5.376 24 O -0.449 6.449 25 N -0.169 5.169 26 C -0.017 4.017 27 C -0.079 4.079 28 C 0.057 3.943 29 H 0.058 0.942 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.048 0.952 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.257 0.743 39 H 0.175 0.825 40 H 0.179 0.821 41 H 0.255 0.745 42 H 0.249 0.751 43 H 0.220 0.780 44 H 0.042 0.958 45 H 0.095 0.905 46 H 0.013 0.987 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.997 -25.219 -17.242 30.696 hybrid contribution 0.384 1.690 -0.130 1.738 sum 3.381 -23.528 -17.373 29.442 Atomic orbital electron populations 1.70207 1.06731 1.25737 1.55695 1.25806 0.96041 1.01563 1.01481 0.85200 0.78667 0.79836 0.76698 1.18888 1.21795 1.22045 1.19592 0.92953 0.85972 1.40623 0.91223 1.44418 1.34121 1.02280 1.53026 1.21179 0.97515 0.85509 0.94358 1.22460 0.89091 1.00269 0.95178 1.61740 1.35049 1.05252 1.24822 1.22220 0.94877 0.96745 0.93745 1.21210 0.98291 0.90527 0.89600 1.45600 1.11731 1.40555 1.37501 1.18270 0.83696 0.82055 0.81260 1.90823 1.30979 1.55265 1.68015 1.21125 0.96943 0.99691 0.99293 1.21910 0.99297 0.92889 0.90890 1.22213 0.99093 0.95169 0.97414 1.21350 0.90816 0.96788 0.96186 1.17963 0.83872 0.80862 0.81626 1.43523 1.10456 1.41750 1.41859 1.90842 1.39157 1.64437 1.50486 1.67584 1.29983 1.13433 1.05913 1.23434 0.96957 0.89113 0.92174 1.22607 0.99401 0.89444 0.96489 1.20614 0.87848 0.96416 0.89391 0.94162 0.96776 0.91934 0.87948 0.95222 0.87544 0.93135 0.92727 0.91669 0.74300 0.82542 0.82124 0.74495 0.75055 0.77985 0.95773 0.90517 0.98654 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.16 11.15 21.65 0.24 -55.92 16 2 C -0.05 -3.02 4.93 84.86 0.42 -2.60 16 3 Si 0.97 44.83 29.59 68.60 2.03 46.86 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 7 C -0.26 -14.33 9.63 84.03 0.81 -13.52 16 8 H 0.07 3.69 7.89 -2.91 -0.02 3.66 16 9 N -0.61 -30.88 3.04 -698.12 -2.12 -33.00 16 10 C 0.14 5.62 6.69 86.35 0.58 6.19 16 11 C 0.06 1.77 5.62 86.38 0.49 2.26 16 12 N -0.54 -16.48 4.63 -895.28 -4.14 -20.63 16 13 C 0.05 1.02 5.08 86.30 0.44 1.46 16 14 C 0.13 2.72 5.60 86.38 0.48 3.21 16 15 N -0.70 -10.39 5.51 -465.82 -2.57 -12.96 16 16 C 0.56 11.06 7.79 86.84 0.68 11.74 16 17 O -0.57 -16.83 16.41 -3.80 -0.06 -16.89 16 18 C -0.17 -2.39 5.90 -19.93 -0.12 -2.51 16 19 C -0.02 -0.35 9.71 22.71 0.22 -0.13 16 20 C -0.12 -1.69 9.62 22.58 0.22 -1.48 16 21 C 0.09 1.22 6.75 41.96 0.28 1.51 16 22 C 0.57 8.64 8.09 86.93 0.70 9.34 16 23 N -0.81 -5.86 8.86 -175.26 -1.55 -7.41 16 24 O -0.57 -12.68 17.15 -3.71 -0.06 -12.74 16 25 N -0.46 -5.15 9.52 -183.91 -1.75 -6.90 16 26 C 0.14 1.35 10.71 85.11 0.91 2.26 16 27 C 0.05 1.83 5.46 86.38 0.47 2.31 16 28 C 0.18 8.99 5.42 86.35 0.47 9.46 16 29 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.06 2.38 7.96 -2.39 -0.02 2.36 16 32 H 0.10 2.32 7.99 -2.39 -0.02 2.30 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 1.50 7.97 -2.39 -0.02 1.49 16 35 H 0.05 0.89 8.12 -2.39 -0.02 0.87 16 36 H 0.05 1.42 6.40 -2.39 -0.02 1.40 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.42 2.68 6.53 -92.71 -0.61 2.07 16 39 H 0.16 2.36 7.73 -2.91 -0.02 2.34 16 40 H 0.16 2.13 7.63 -2.91 -0.02 2.11 16 41 H 0.42 1.53 8.15 -92.71 -0.76 0.78 16 42 H 0.42 1.66 8.93 -92.71 -0.83 0.84 16 43 H 0.20 0.28 6.41 -2.91 -0.02 0.26 16 44 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.08 2.61 6.16 -2.39 -0.01 2.60 16 46 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 47 H 0.05 3.01 6.12 -2.39 -0.01 3.00 16 Total: -1.00 -79.06 387.18 -4.09 -83.15 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -1.14 Total: 6.95 kcal Atomic # 6 Polarization: 22.45 SS G_CDS: 7.05 Total: 29.50 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -11.89 Total: -136.82 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.13 Total: -29.63 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -79.06 -4.09 -83.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265266531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.141 kcal (2) G-P(sol) polarization free energy of solvation -79.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds