Wall clock time and date at job start Wed Apr 1 2020 04:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99670 * 2 1 4 4 H 1.48506 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46903 * 299.99110 * 3 2 1 6 6 H 1.48498 * 109.47416 * 59.99525 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.46901 * 110.99844 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.46861 * 325.00254 * 14 13 12 16 16 C 1.52996 * 109.46830 * 84.99930 * 14 13 12 17 17 C 1.53003 * 109.47262 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46752 * 300.00159 * 17 16 14 19 19 C 1.53001 * 109.47267 * 59.99390 * 18 17 16 20 20 H 1.09000 * 109.47067 * 180.02562 * 19 18 17 21 21 N 1.46502 * 109.46612 * 60.00187 * 19 18 17 22 22 C 1.34779 * 119.99666 * 85.00067 * 21 19 18 23 23 O 1.21276 * 120.00258 * 359.97438 * 22 21 19 24 24 C 1.50708 * 119.99691 * 179.97438 * 22 21 19 25 25 C 1.53003 * 109.46932 * 179.97438 * 24 22 21 26 26 C 1.52996 * 109.46653 * 179.97438 * 25 24 22 27 27 F 1.39907 * 109.47216 * 65.00440 * 26 25 24 28 28 F 1.39903 * 109.46766 * 184.99878 * 26 25 24 29 29 C 1.52995 * 109.46888 * 204.99756 * 14 13 12 30 30 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 33 33 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 34 34 H 1.00902 * 110.99470 * 303.94971 * 13 12 10 35 35 H 1.09004 * 109.47615 * 299.99953 * 16 14 13 36 36 H 1.09000 * 109.47422 * 59.99815 * 16 14 13 37 37 H 1.09000 * 109.47184 * 59.99510 * 17 16 14 38 38 H 1.08997 * 109.47809 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.47223 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.46746 * 299.99619 * 18 17 16 41 41 H 0.96999 * 120.00087 * 264.99146 * 21 19 18 42 42 H 1.09002 * 109.47223 * 299.99952 * 24 22 21 43 43 H 1.08992 * 109.46859 * 60.00140 * 24 22 21 44 44 H 1.08996 * 109.46799 * 299.99906 * 25 24 22 45 45 H 1.08999 * 109.46901 * 60.00172 * 25 24 22 46 46 H 1.08998 * 109.47891 * 305.00117 * 26 25 24 47 47 H 1.09000 * 109.47080 * 300.00011 * 29 14 13 48 48 H 1.08994 * 109.47231 * 60.00309 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 1.4982 -7.2708 -0.0144 15 1 0.5848 -7.1913 0.5749 16 6 1.1452 -7.6533 -1.4532 17 6 0.4153 -8.9979 -1.4590 18 6 1.3207 -10.0723 -0.8532 19 6 1.6738 -9.6898 0.5856 20 1 2.3191 -10.4549 1.0170 21 7 0.4459 -9.5824 1.3776 22 6 -0.0921 -10.6831 1.9391 23 8 0.4398 -11.7626 1.7884 24 6 -1.3549 -10.5726 2.7543 25 6 -1.7497 -11.9567 3.2731 26 6 -3.0313 -11.8443 4.1012 27 9 -4.0869 -11.4439 3.2749 28 9 -3.3298 -13.0874 4.6695 29 6 2.4041 -8.3448 0.5911 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6165 -4.9246 0.8846 33 1 0.6179 -4.9168 -0.8953 34 1 2.8339 -5.9090 -0.7895 35 1 0.4998 -6.8881 -1.8847 36 1 2.0586 -7.7327 -2.0426 37 1 -0.4982 -8.9180 -0.8697 38 1 0.1641 -9.2707 -2.4840 39 1 0.8009 -11.0303 -0.8577 40 1 2.2341 -10.1522 -1.4425 41 1 0.0204 -8.7191 1.4979 42 1 -1.1856 -9.9028 3.5974 43 1 -2.1563 -10.1765 2.1308 44 1 -1.9191 -12.6261 2.4298 45 1 -0.9483 -12.3533 3.8965 46 1 -2.8895 -11.1079 4.8922 47 1 3.3175 -8.4243 0.0017 48 1 2.6556 -8.0723 1.6161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266063107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:21 Heat of formation + Delta-G solvation = -202.163248 kcal Electronic energy + Delta-G solvation = -30298.896036 eV Core-core repulsion = 25637.053270 eV Total energy + Delta-G solvation = -4661.842766 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.34044 -47.35297 -40.61688 -38.91757 -38.02986 -35.25403 -34.22171 -33.94639 -33.22812 -31.27556 -30.47986 -29.48198 -27.34020 -26.17898 -24.05070 -23.19218 -22.57410 -21.74823 -21.08607 -19.63252 -19.15063 -18.14108 -17.96405 -17.91090 -17.30060 -16.54487 -16.29090 -15.94503 -15.85191 -15.45745 -15.07686 -14.64260 -14.53907 -14.48020 -14.23782 -14.04036 -13.78487 -13.74353 -13.63779 -13.29977 -13.06991 -12.87065 -12.72626 -12.56255 -12.39388 -12.31688 -12.06166 -11.77917 -11.71823 -11.55764 -11.35541 -11.32818 -11.10486 -10.97080 -10.63069 -10.40993 -10.37064 -10.25161 -10.17908 -9.55858 -9.33207 -8.50842 -8.08711 -7.99652 -6.45700 -3.86554 2.30788 2.74996 3.13438 3.24360 3.31483 3.45337 3.81081 3.86290 3.97482 3.99509 4.12431 4.22368 4.45351 4.52845 4.55225 4.63855 4.77729 4.81619 4.92196 4.95838 4.99181 5.12156 5.18388 5.21372 5.32558 5.33477 5.37818 5.45249 5.49942 5.56328 5.72172 5.78200 5.81715 5.88979 5.92123 6.02212 6.06176 6.16249 6.23598 6.28813 7.17014 7.18062 7.51821 7.59570 7.89742 8.02631 8.56994 9.14199 9.50169 10.01395 10.72058 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.001870 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.846215 B =14973.434115 C =16448.284191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.663 5.663 14 C 0.089 3.911 15 H 0.071 0.929 16 C -0.153 4.153 17 C -0.112 4.112 18 C -0.130 4.130 19 C 0.147 3.853 20 H 0.090 0.910 21 N -0.720 5.720 22 C 0.516 3.484 23 O -0.542 6.542 24 C -0.145 4.145 25 C -0.155 4.155 26 C 0.261 3.739 27 F -0.206 7.206 28 F -0.206 7.206 29 C -0.115 4.115 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.351 0.649 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.402 0.598 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.112 0.888 47 H 0.081 0.919 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 -22.477 3.763 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.294 5.294 14 C -0.022 4.022 15 H 0.090 0.910 16 C -0.193 4.193 17 C -0.150 4.150 18 C -0.169 4.169 19 C 0.043 3.957 20 H 0.108 0.892 21 N -0.373 5.373 22 C 0.303 3.697 23 O -0.419 6.419 24 C -0.185 4.185 25 C -0.194 4.194 26 C 0.207 3.793 27 F -0.188 7.188 28 F -0.187 7.187 29 C -0.153 4.153 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.171 0.829 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.237 0.763 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.121 0.879 46 H 0.129 0.871 47 H 0.099 0.901 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.336 -23.065 4.333 24.067 hybrid contribution -0.998 1.315 -0.947 1.903 sum -6.333 -21.750 3.387 22.905 Atomic orbital electron populations 1.69615 1.05937 1.28087 1.50675 1.25267 0.95649 0.99757 0.97322 0.85800 0.79725 0.81105 0.77721 1.19204 1.20765 1.20723 1.19754 0.93407 0.82216 1.47468 0.87860 1.41877 1.09186 1.04639 1.64356 1.19821 0.88402 0.84729 0.84525 1.90529 1.13763 1.87061 1.55364 1.21699 0.94431 0.91049 1.01020 1.60186 1.18373 0.99475 1.51384 1.21553 0.96305 0.89720 0.94618 0.91046 1.22363 1.01134 0.97438 0.98337 1.21427 0.98431 0.94471 1.00714 1.21929 1.00571 0.98860 0.95536 1.21018 0.85483 0.98303 0.90921 0.89246 1.46172 1.27894 1.10478 1.52726 1.20412 0.85678 0.84235 0.79419 1.90719 1.62774 1.27317 1.61098 1.21603 0.97088 0.98434 1.01399 1.22397 0.96146 0.98583 1.02231 1.21964 0.84580 0.82313 0.90412 1.92999 1.60565 1.90690 1.74507 1.92997 1.94248 1.45780 1.85693 1.21809 0.98695 0.91959 1.02873 0.91908 0.77496 0.89763 0.93870 0.82895 0.91772 0.91427 0.92102 0.92052 0.91562 0.90889 0.76272 0.87985 0.87837 0.88631 0.87873 0.87053 0.90070 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.10 13.05 55.50 0.72 -23.37 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 10 C 0.44 10.00 7.82 -10.98 -0.09 9.91 16 11 O -0.58 -15.43 15.78 5.55 0.09 -15.34 16 12 C 0.05 0.82 5.97 -4.97 -0.03 0.79 16 13 N -0.66 -9.57 5.87 -107.99 -0.63 -10.20 16 14 C 0.09 0.90 2.29 -67.72 -0.16 0.75 16 15 H 0.07 0.66 6.16 -51.93 -0.32 0.34 16 16 C -0.15 -1.43 5.17 -26.73 -0.14 -1.57 16 17 C -0.11 -0.91 5.77 -26.73 -0.15 -1.06 16 18 C -0.13 -1.09 5.60 -26.73 -0.15 -1.24 16 19 C 0.15 1.25 2.78 -67.90 -0.19 1.06 16 20 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 21 N -0.72 -5.35 4.23 -53.78 -0.23 -5.58 16 22 C 0.52 4.33 7.79 -10.98 -0.09 4.25 16 23 O -0.54 -6.57 15.65 5.56 0.09 -6.48 16 24 C -0.15 -0.75 5.62 -27.88 -0.16 -0.90 16 25 C -0.16 -0.93 4.73 -26.73 -0.13 -1.05 16 26 C 0.26 1.50 5.29 37.16 0.20 1.69 16 27 F -0.21 -1.62 17.02 2.25 0.04 -1.58 16 28 F -0.21 -1.70 17.34 2.25 0.04 -1.66 16 29 C -0.11 -1.06 5.22 -26.71 -0.14 -1.20 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.39 9.20 7.90 -40.82 -0.32 8.87 16 32 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 33 H 0.04 0.63 7.44 -51.93 -0.39 0.25 16 34 H 0.35 5.39 8.17 -39.29 -0.32 5.07 16 35 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 36 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 37 H 0.06 0.48 7.60 -51.93 -0.39 0.08 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.40 2.40 6.87 -40.82 -0.28 2.12 16 42 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.10 0.44 7.93 -51.93 -0.41 0.03 16 44 H 0.10 0.71 8.10 -51.93 -0.42 0.29 16 45 H 0.10 0.63 8.10 -51.93 -0.42 0.21 16 46 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 396.27 15.07 5.97 5.97 Total: -1.00 -33.21 396.27 -7.82 -41.03 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -7.37 Total: 11.91 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.45 Total: 3.57 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.20 Total: -53.11 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.17 Total: -21.83 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.08 Total: -3.24 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.21 -7.82 -41.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266063107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.137 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds