Wall clock time and date at job start Wed Apr 1 2020 04:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99670 * 2 1 4 4 H 1.48506 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46903 * 299.99110 * 3 2 1 6 6 H 1.48498 * 109.47416 * 59.99525 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.46901 * 110.99844 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.46861 * 325.00254 * 14 13 12 16 16 C 1.52996 * 109.46830 * 84.99930 * 14 13 12 17 17 C 1.53003 * 109.47262 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46752 * 300.00159 * 17 16 14 19 19 C 1.53001 * 109.47267 * 59.99390 * 18 17 16 20 20 H 1.09000 * 109.47067 * 180.02562 * 19 18 17 21 21 N 1.46502 * 109.46612 * 60.00187 * 19 18 17 22 22 C 1.34779 * 119.99666 * 85.00067 * 21 19 18 23 23 O 1.21276 * 120.00258 * 359.97438 * 22 21 19 24 24 C 1.50708 * 119.99691 * 179.97438 * 22 21 19 25 25 C 1.53003 * 109.46932 * 179.97438 * 24 22 21 26 26 C 1.52996 * 109.46653 * 179.97438 * 25 24 22 27 27 F 1.39907 * 109.47216 * 65.00440 * 26 25 24 28 28 F 1.39903 * 109.46766 * 184.99878 * 26 25 24 29 29 C 1.52995 * 109.46888 * 204.99756 * 14 13 12 30 30 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 33 33 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 34 34 H 1.00902 * 110.99470 * 303.94971 * 13 12 10 35 35 H 1.09004 * 109.47615 * 299.99953 * 16 14 13 36 36 H 1.09000 * 109.47422 * 59.99815 * 16 14 13 37 37 H 1.09000 * 109.47184 * 59.99510 * 17 16 14 38 38 H 1.08997 * 109.47809 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.47223 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.46746 * 299.99619 * 18 17 16 41 41 H 0.96999 * 120.00087 * 264.99146 * 21 19 18 42 42 H 1.09002 * 109.47223 * 299.99952 * 24 22 21 43 43 H 1.08992 * 109.46859 * 60.00140 * 24 22 21 44 44 H 1.08996 * 109.46799 * 299.99906 * 25 24 22 45 45 H 1.08999 * 109.46901 * 60.00172 * 25 24 22 46 46 H 1.08998 * 109.47891 * 305.00117 * 26 25 24 47 47 H 1.09000 * 109.47080 * 300.00011 * 29 14 13 48 48 H 1.08994 * 109.47231 * 60.00309 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 1.4982 -7.2708 -0.0144 15 1 0.5848 -7.1913 0.5749 16 6 1.1452 -7.6533 -1.4532 17 6 0.4153 -8.9979 -1.4590 18 6 1.3207 -10.0723 -0.8532 19 6 1.6738 -9.6898 0.5856 20 1 2.3191 -10.4549 1.0170 21 7 0.4459 -9.5824 1.3776 22 6 -0.0921 -10.6831 1.9391 23 8 0.4398 -11.7626 1.7884 24 6 -1.3549 -10.5726 2.7543 25 6 -1.7497 -11.9567 3.2731 26 6 -3.0313 -11.8443 4.1012 27 9 -4.0869 -11.4439 3.2749 28 9 -3.3298 -13.0874 4.6695 29 6 2.4041 -8.3448 0.5911 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6165 -4.9246 0.8846 33 1 0.6179 -4.9168 -0.8953 34 1 2.8339 -5.9090 -0.7895 35 1 0.4998 -6.8881 -1.8847 36 1 2.0586 -7.7327 -2.0426 37 1 -0.4982 -8.9180 -0.8697 38 1 0.1641 -9.2707 -2.4840 39 1 0.8009 -11.0303 -0.8577 40 1 2.2341 -10.1522 -1.4425 41 1 0.0204 -8.7191 1.4979 42 1 -1.1856 -9.9028 3.5974 43 1 -2.1563 -10.1765 2.1308 44 1 -1.9191 -12.6261 2.4298 45 1 -0.9483 -12.3533 3.8965 46 1 -2.8895 -11.1079 4.8922 47 1 3.3175 -8.4243 0.0017 48 1 2.6556 -8.0723 1.6161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266063107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:20 Heat of formation + Delta-G solvation = -225.915540 kcal Electronic energy + Delta-G solvation = -30299.926013 eV Core-core repulsion = 25637.053270 eV Total energy + Delta-G solvation = -4662.872743 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.86251 -47.89475 -41.33946 -40.19906 -39.33063 -36.38258 -35.75143 -34.75406 -34.05742 -33.24059 -31.27013 -30.44058 -27.85016 -27.72276 -25.65848 -23.80002 -23.21933 -22.59061 -21.72586 -21.09153 -20.20330 -19.85260 -18.67813 -18.45370 -17.96623 -17.73773 -17.04104 -16.92871 -16.54085 -16.49359 -16.32459 -16.08364 -15.91768 -15.30503 -15.24783 -14.92362 -14.79974 -14.66677 -14.40464 -14.26539 -14.05175 -13.72295 -13.55496 -13.41836 -13.30726 -13.23923 -13.18810 -13.00339 -12.89682 -12.78632 -12.39501 -12.20873 -12.14369 -12.11429 -11.79014 -11.70932 -11.50874 -11.40362 -11.18882 -10.88307 -10.32074 -10.02879 -9.99687 -9.22263 -8.46015 -5.94236 1.37106 1.42790 1.56428 1.67618 2.07577 2.16691 2.29782 2.91255 3.00455 3.21692 3.41752 3.51557 3.54040 3.68376 3.76493 3.80193 3.95748 4.05184 4.19724 4.20404 4.27754 4.33840 4.35869 4.44008 4.49106 4.57969 4.60100 4.63949 4.65072 4.74228 4.87252 4.90248 5.05455 5.06865 5.11724 5.15480 5.28161 5.35775 5.39672 5.42585 5.60656 5.93780 6.16352 6.43477 6.58438 6.61795 7.14416 7.28684 7.58566 8.14084 8.71464 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.001870 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.846215 B =14973.434115 C =16448.284191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.625 6.625 12 C 0.066 3.934 13 N -0.676 5.676 14 C 0.093 3.907 15 H 0.088 0.912 16 C -0.148 4.148 17 C -0.105 4.105 18 C -0.126 4.126 19 C 0.154 3.846 20 H 0.076 0.924 21 N -0.712 5.712 22 C 0.513 3.487 23 O -0.585 6.585 24 C -0.138 4.138 25 C -0.152 4.152 26 C 0.259 3.741 27 F -0.219 7.219 28 F -0.223 7.223 29 C -0.106 4.106 30 H 0.277 0.723 31 H 0.397 0.603 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.344 0.656 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.412 0.588 42 H 0.133 0.867 43 H 0.118 0.882 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.152 0.848 47 H 0.077 0.923 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.769 -22.100 4.223 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.066 4.066 13 N -0.307 5.307 14 C -0.017 4.017 15 H 0.106 0.894 16 C -0.187 4.187 17 C -0.143 4.143 18 C -0.164 4.164 19 C 0.049 3.951 20 H 0.094 0.906 21 N -0.365 5.365 22 C 0.301 3.699 23 O -0.465 6.465 24 C -0.177 4.177 25 C -0.190 4.190 26 C 0.206 3.794 27 F -0.200 7.200 28 F -0.204 7.204 29 C -0.144 4.144 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.249 0.751 42 H 0.151 0.849 43 H 0.136 0.864 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.169 0.831 47 H 0.096 0.904 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.657 -22.686 4.796 24.124 hybrid contribution -0.559 1.129 -1.099 1.671 sum -7.216 -21.557 3.697 23.031 Atomic orbital electron populations 1.69666 1.06725 1.29186 1.50486 1.26004 0.96550 1.02327 0.96410 0.84900 0.78039 0.77286 0.78297 1.19893 1.19676 1.19636 1.19680 0.92658 0.84108 1.49719 0.90445 1.41943 1.09343 1.04713 1.65137 1.20985 0.88277 0.86281 0.82018 1.90499 1.16004 1.88009 1.56607 1.21563 0.94047 0.87884 1.03099 1.60190 1.18613 1.00574 1.51359 1.21622 0.96675 0.87767 0.95639 0.89361 1.22283 1.01040 0.97923 0.97434 1.21368 0.98348 0.93443 1.01144 1.21873 1.00703 0.98428 0.95430 1.20844 0.85784 0.97308 0.91167 0.90597 1.46104 1.27359 1.10885 1.52163 1.20981 0.86261 0.83560 0.79079 1.90707 1.64205 1.28915 1.62660 1.21628 0.95529 0.98443 1.02128 1.22328 0.96346 0.98842 1.01529 1.22343 0.83623 0.82379 0.91100 1.92972 1.61220 1.90720 1.75106 1.92962 1.94334 1.47220 1.85919 1.21698 0.98564 0.91933 1.02244 0.91331 0.76928 0.87458 0.91628 0.83742 0.92053 0.91824 0.91318 0.91599 0.92654 0.90609 0.75076 0.84907 0.86397 0.90769 0.88175 0.83083 0.90389 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.44 13.05 21.66 0.28 -48.16 16 2 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 3 Si 0.99 42.19 29.55 68.60 2.03 44.22 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.33 -18.47 9.68 84.04 0.81 -17.66 16 8 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 9 N -0.57 -28.39 5.29 -306.98 -1.62 -30.01 16 10 C 0.44 19.79 7.82 87.66 0.69 20.47 16 11 O -0.62 -33.60 15.78 -3.07 -0.05 -33.64 16 12 C 0.07 2.02 5.97 85.56 0.51 2.53 16 13 N -0.68 -18.51 5.87 -495.59 -2.91 -21.42 16 14 C 0.09 1.68 2.29 44.91 0.10 1.78 16 15 H 0.09 1.32 6.16 -2.39 -0.01 1.31 16 16 C -0.15 -2.44 5.17 30.59 0.16 -2.28 16 17 C -0.10 -1.47 5.77 30.60 0.18 -1.30 16 18 C -0.13 -1.94 5.60 30.60 0.17 -1.77 16 19 C 0.15 2.44 2.78 45.01 0.13 2.56 16 20 H 0.08 1.46 7.58 -2.39 -0.02 1.44 16 21 N -0.71 -9.17 4.23 -442.44 -1.87 -11.04 16 22 C 0.51 7.86 7.79 87.66 0.68 8.54 16 23 O -0.58 -14.06 15.65 -3.02 -0.05 -14.11 16 24 C -0.14 -1.07 5.62 29.85 0.17 -0.90 16 25 C -0.15 -1.63 4.73 30.59 0.14 -1.49 16 26 C 0.26 2.48 5.29 71.98 0.38 2.86 16 27 F -0.22 -3.07 17.02 44.97 0.77 -2.31 16 28 F -0.22 -3.49 17.34 44.97 0.78 -2.71 16 29 C -0.11 -1.81 5.22 30.61 0.16 -1.65 16 30 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 31 H 0.40 18.48 7.90 -92.71 -0.73 17.75 16 32 H 0.11 2.83 8.05 -2.38 -0.02 2.81 16 33 H 0.07 1.75 7.44 -2.39 -0.02 1.73 16 34 H 0.34 10.32 8.17 -89.69 -0.73 9.58 16 35 H 0.06 1.08 7.45 -2.38 -0.02 1.06 16 36 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 37 H 0.07 0.88 7.60 -2.39 -0.02 0.86 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.41 3.65 6.87 -92.71 -0.64 3.01 16 42 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.12 0.64 7.93 -2.39 -0.02 0.62 16 44 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 45 H 0.10 1.14 8.10 -2.39 -0.02 1.12 16 46 H 0.15 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.40 396.27 1.01 -72.39 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -1.09 Total: 35.30 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 4.75 Total: 11.49 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -6.12 Total: -110.63 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -0.10 Total: -47.76 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 1.54 Total: -5.01 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -73.40 1.01 -72.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266063107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.526 kcal (2) G-P(sol) polarization free energy of solvation -73.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds