Wall clock time and date at job start Wed Apr 1 2020 04:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86810 * 119.99749 * 2 1 4 4 H 1.48499 * 109.46889 * 240.00146 * 3 2 1 5 5 H 1.48499 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46853 * 120.00432 * 3 2 1 7 7 C 1.38944 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00357 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00299 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00597 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99944 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00223 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47145 * 180.02562 * 12 10 9 14 14 C 1.47960 * 110.99916 * 170.00358 * 13 12 10 15 15 C 1.53934 * 86.18181 * 222.41749 * 14 13 12 16 16 C 1.52998 * 113.73531 * 138.07577 * 15 14 13 17 17 N 1.46497 * 109.47370 * 175.00100 * 16 15 14 18 18 C 1.34773 * 120.00139 * 180.02562 * 17 16 15 19 19 O 1.21600 * 119.99825 * 0.02562 * 18 17 16 20 20 C 1.47430 * 120.00093 * 180.02562 * 18 17 16 21 21 C 1.41209 * 126.43851 * 0.02562 * 20 18 17 22 22 N 1.30282 * 108.02743 * 179.90952 * 21 20 18 23 23 N 1.40382 * 109.08935 * 359.94368 * 22 21 20 24 24 C 1.34213 * 108.13118 * 0.18577 * 23 22 21 25 25 C 1.51388 * 110.37341 * 179.74294 * 24 23 22 26 26 C 1.54565 * 104.14194 * 343.53699 * 25 24 23 27 27 C 1.47252 * 140.96265 * 180.30336 * 23 22 21 28 28 C 1.47964 * 110.99908 * 70.64559 * 13 12 10 29 29 H 0.96998 * 120.00505 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99358 * 359.97438 * 9 7 2 31 31 H 1.09008 * 109.46707 * 60.00969 * 12 10 9 32 32 H 1.08995 * 109.47346 * 300.00662 * 12 10 9 33 33 H 1.09005 * 113.75636 * 108.10102 * 14 13 12 34 34 H 1.09003 * 113.75844 * 336.73649 * 14 13 12 35 35 H 1.09000 * 113.73627 * 269.25938 * 15 14 13 36 36 H 1.09008 * 109.46706 * 55.00281 * 16 15 14 37 37 H 1.08991 * 109.47362 * 295.00631 * 16 15 14 38 38 H 0.96998 * 119.99781 * 0.02562 * 17 16 15 39 39 H 1.08003 * 125.98335 * 359.86659 * 21 20 18 40 40 H 1.08997 * 110.49778 * 224.86504 * 25 24 23 41 41 H 1.09000 * 110.49275 * 102.19491 * 25 24 23 42 42 H 1.09007 * 110.98862 * 266.93911 * 26 25 24 43 43 H 1.08998 * 111.02563 * 143.13651 * 26 25 24 44 44 H 1.09002 * 110.23109 * 77.95595 * 27 23 22 45 45 H 1.09000 * 110.22779 * 316.08457 * 27 23 22 46 46 H 1.08999 * 113.75726 * 23.26308 * 28 13 12 47 47 H 1.09004 * 113.75459 * 251.90192 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9794 0.0016 14 6 1.5091 -7.2664 0.2420 15 6 2.6857 -7.6045 1.1753 16 6 2.2618 -8.2820 2.4799 17 7 3.4536 -8.6682 3.2393 18 6 3.3231 -9.2858 4.4301 19 8 2.2160 -9.5228 4.8740 20 6 4.5224 -9.6740 5.1945 21 6 5.8653 -9.4660 4.8107 22 7 6.6317 -9.9451 5.7491 23 7 5.8289 -10.4770 6.7706 24 6 4.5437 -10.3098 6.4216 25 6 3.6302 -10.8735 7.4890 26 6 4.5524 -11.7809 8.3348 27 6 5.9356 -11.1452 8.0784 28 6 2.8911 -6.0844 1.3050 29 1 -0.4851 0.8400 0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6170 -4.9209 -0.8888 32 1 0.6175 -4.9204 0.8912 33 1 1.4506 -7.9046 -0.6398 34 1 0.5546 -7.1635 0.7582 35 1 3.5073 -8.1189 0.6769 36 1 1.6719 -9.1701 2.2531 37 1 1.6629 -7.5894 3.0712 38 1 4.3366 -8.4795 2.8850 39 1 6.1987 -8.9933 3.8987 40 1 2.8298 -11.4587 7.0363 41 1 3.2183 -10.0713 8.1014 42 1 4.5231 -12.8099 7.9763 43 1 4.2891 -11.7300 9.3912 44 1 6.1657 -10.4170 8.8561 45 1 6.7048 -11.9168 8.0457 46 1 2.3407 -5.6358 2.1320 47 1 3.9367 -5.7781 1.2725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267683661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:33 Heat of formation + Delta-G solvation = 54.697048 kcal Electronic energy + Delta-G solvation = -29071.767919 eV Core-core repulsion = 24871.752638 eV Total energy + Delta-G solvation = -4200.015281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.20292 -40.18842 -39.10414 -37.67369 -36.78676 -34.76618 -33.86598 -31.68685 -31.27710 -30.63142 -29.88247 -28.22264 -26.77539 -25.92948 -24.81719 -23.02118 -22.71464 -22.05934 -20.77942 -20.21849 -19.37661 -19.14120 -17.91746 -17.67737 -16.98203 -16.29065 -16.13642 -15.43802 -15.33585 -15.17883 -14.93834 -14.76486 -14.58641 -14.34653 -14.23926 -14.02633 -13.70385 -13.67085 -13.49522 -13.21396 -12.79237 -12.55386 -12.45544 -12.17770 -12.06548 -11.79238 -11.69227 -11.46604 -11.32792 -11.21222 -11.02297 -10.58822 -10.55219 -10.42656 -10.19315 -9.95795 -9.75349 -9.47625 -9.23473 -8.87080 -8.61840 -8.20041 -7.94428 -6.39776 -3.80620 1.19774 1.74072 1.86205 3.10808 3.21359 3.26839 3.31275 3.31417 3.50075 3.91611 3.92715 4.02764 4.09184 4.17079 4.23654 4.44256 4.51374 4.69934 4.73935 4.83858 4.90324 4.93682 4.98139 5.13191 5.18074 5.25249 5.28622 5.33265 5.38405 5.47007 5.51181 5.62544 5.67545 5.77403 5.81417 5.88198 6.05522 6.09916 6.24241 6.27483 6.29059 6.41175 6.66175 7.23319 7.24717 7.46164 7.56587 8.07423 8.18997 8.63432 9.19709 9.56221 10.08062 10.77933 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.001748 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.646351 B =16017.238684 C =16780.276330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.580 6.580 12 C 0.010 3.990 13 N -0.454 5.454 14 C 0.008 3.992 15 C -0.134 4.134 16 C 0.132 3.868 17 N -0.724 5.724 18 C 0.595 3.405 19 O -0.551 6.551 20 C -0.281 4.281 21 C 0.086 3.914 22 N -0.275 5.275 23 N -0.384 5.384 24 C 0.137 3.863 25 C -0.070 4.070 26 C -0.133 4.133 27 C 0.125 3.875 28 C 0.026 3.974 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.400 0.600 39 H 0.197 0.803 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.067 0.933 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.581 -25.627 14.892 30.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.464 6.464 12 C -0.122 4.122 13 N -0.176 5.176 14 C -0.121 4.121 15 C -0.153 4.153 16 C 0.008 3.992 17 N -0.375 5.375 18 C 0.382 3.618 19 O -0.430 6.430 20 C -0.295 4.295 21 C -0.102 4.102 22 N -0.093 5.093 23 N -0.164 5.164 24 C 0.004 3.996 25 C -0.109 4.109 26 C -0.172 4.172 27 C 0.005 3.995 28 C -0.103 4.103 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.235 0.765 39 H 0.214 0.786 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.085 0.915 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.275 -25.726 15.075 30.692 hybrid contribution -1.091 1.286 0.109 1.690 sum 6.184 -24.440 15.184 29.430 Atomic orbital electron populations 1.69599 1.05921 1.28238 1.50590 1.25256 0.95635 0.99698 0.97358 0.85921 0.78760 0.80496 0.79055 1.19893 1.20982 1.19942 1.19643 0.93318 0.82246 1.47667 0.88009 1.41867 1.09175 1.04597 1.64491 1.19697 0.88375 0.84527 0.84499 1.90514 1.13645 1.87036 1.55179 1.22461 0.95194 0.92642 1.01895 1.68404 1.18411 0.99948 1.30858 1.23964 0.95858 0.93550 0.98749 1.23347 0.99983 0.96990 0.95008 1.21409 0.87273 0.99458 0.91083 1.45731 1.10150 1.61011 1.20574 1.17204 0.87499 0.76805 0.80260 1.90755 1.26705 1.56042 1.69513 1.19468 0.94024 1.17781 0.98269 1.24133 0.90179 0.97501 0.98386 1.77180 1.17444 1.17808 0.96819 1.50148 1.05058 1.44907 1.16272 1.22559 0.87886 0.94836 0.94350 1.21012 0.96985 0.99642 0.93268 1.22880 0.91954 1.00097 1.02264 1.22485 1.00149 0.97086 0.79797 1.23875 1.02304 0.92607 0.91477 0.91837 0.77496 0.89165 0.92796 0.89139 0.91117 0.87689 0.91173 0.91245 0.76518 0.78604 0.87600 0.87844 0.89166 0.87566 0.88794 0.88544 0.91457 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.77 13.05 55.50 0.72 -24.04 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.51 5.29 -10.97 -0.06 -14.57 16 10 C 0.44 10.63 7.59 -10.99 -0.08 10.54 16 11 O -0.58 -15.81 15.13 5.54 0.08 -15.73 16 12 C 0.01 0.18 5.31 -4.98 -0.03 0.16 16 13 N -0.45 -7.44 5.95 -239.72 -1.43 -8.87 16 14 C 0.01 0.10 7.54 -2.77 -0.02 0.08 16 15 C -0.13 -1.46 3.94 -89.69 -0.35 -1.81 16 16 C 0.13 1.39 5.53 -4.04 -0.02 1.37 16 17 N -0.72 -7.35 5.55 -61.39 -0.34 -7.69 16 18 C 0.59 7.32 7.81 -12.52 -0.10 7.22 16 19 O -0.55 -8.46 16.90 5.28 0.09 -8.37 16 20 C -0.28 -3.08 6.13 -105.03 -0.64 -3.73 16 21 C 0.09 0.83 11.50 -17.08 -0.20 0.64 16 22 N -0.27 -3.05 12.63 30.82 0.39 -2.66 16 23 N -0.38 -3.58 4.82 -55.09 -0.27 -3.84 16 24 C 0.14 1.35 7.31 -81.22 -0.59 0.75 16 25 C -0.07 -0.43 6.86 -26.72 -0.18 -0.62 16 26 C -0.13 -0.38 7.18 -25.19 -0.18 -0.56 16 27 C 0.13 0.58 7.77 -2.91 -0.02 0.56 16 28 C 0.03 0.39 6.31 -2.76 -0.02 0.37 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 31 H 0.09 1.50 8.14 -51.92 -0.42 1.07 16 32 H 0.05 0.88 7.69 -51.93 -0.40 0.48 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.77 7.75 -51.93 -0.40 0.36 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.07 0.83 7.84 -51.93 -0.41 0.43 16 38 H 0.40 3.15 7.43 -40.82 -0.30 2.85 16 39 H 0.20 1.22 7.50 -52.48 -0.39 0.83 16 40 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.11 0.04 8.14 -51.93 -0.42 -0.38 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 1.05 7.53 -51.93 -0.39 0.65 16 47 H 0.09 1.55 8.09 -51.93 -0.42 1.13 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -37.38 394.74 -9.34 -46.72 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.78 Total: 9.96 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -2.68 Total: 6.90 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.98 Total: -61.67 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: 0.17 Total: -24.10 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.38 -9.34 -46.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267683661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.414 kcal (2) G-P(sol) polarization free energy of solvation -37.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds