Wall clock time and date at job start Wed Apr 1 2020 05:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00374 * 2 1 4 4 H 1.48508 * 109.46623 * 269.99953 * 3 2 1 5 5 H 1.48499 * 109.47230 * 29.99673 * 3 2 1 6 6 H 1.48493 * 109.47293 * 150.00169 * 3 2 1 7 7 C 1.38946 * 119.99421 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99832 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00405 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00334 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99810 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00098 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47030 * 180.02562 * 12 10 9 14 14 C 1.48290 * 111.00297 * 78.75419 * 13 12 10 15 15 C 1.58431 * 104.80006 * 122.84947 * 14 13 12 16 16 H 1.08997 * 116.59921 * 159.57921 * 15 14 13 17 17 C 1.57415 * 99.69474 * 32.39123 * 15 14 13 18 18 C 1.49710 * 110.99987 * 196.35366 * 13 12 10 19 19 H 1.08998 * 116.16272 * 75.28633 * 18 13 12 20 20 C 1.56017 * 104.08438 * 306.12323 * 18 13 12 21 21 N 1.47870 * 105.11204 * 287.95582 * 20 18 13 22 22 C 1.34776 * 126.92537 * 181.91468 * 21 20 18 23 23 O 1.21276 * 119.99839 * 180.02562 * 22 21 20 24 24 C 1.50696 * 120.00078 * 0.02562 * 22 21 20 25 25 C 1.53002 * 109.47162 * 179.97438 * 24 22 21 26 26 C 1.50706 * 109.46998 * 179.97438 * 25 24 22 27 27 C 1.39858 * 126.04258 * 269.69216 * 26 25 24 28 28 N 1.30842 * 108.20303 * 179.82098 * 27 26 25 29 29 N 1.40084 * 108.20382 * 0.43837 * 28 27 26 30 30 H 0.96996 * 126.04043 * 179.69267 * 29 28 27 31 31 C 1.34955 * 107.92574 * 359.72056 * 29 28 27 32 32 H 0.97004 * 119.99644 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99790 * 0.02562 * 9 7 2 34 34 H 1.08998 * 109.47011 * 60.00409 * 12 10 9 35 35 H 1.08995 * 109.46997 * 300.00438 * 12 10 9 36 36 H 1.09005 * 110.32318 * 241.44485 * 14 13 12 37 37 H 1.08998 * 110.31769 * 3.54250 * 14 13 12 38 38 H 1.08997 * 112.53120 * 192.25269 * 17 15 14 39 39 H 1.09003 * 112.30327 * 64.74545 * 17 15 14 40 40 H 1.08994 * 110.31663 * 169.04475 * 20 18 13 41 41 H 1.08999 * 110.31452 * 46.86183 * 20 18 13 42 42 H 1.08999 * 109.47473 * 60.00010 * 24 22 21 43 43 H 1.09000 * 109.47359 * 299.99984 * 24 22 21 44 44 H 1.09006 * 109.47047 * 60.00377 * 25 24 22 45 45 H 1.08997 * 109.47445 * 299.99903 * 25 24 22 46 46 H 1.08004 * 125.90100 * 0.02562 * 27 26 25 47 47 H 1.07998 * 126.12582 * 179.97438 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0462 -1.4002 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4400 0.7000 7 6 2.0087 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0016 10 6 1.9970 -3.5580 0.0016 11 8 3.2099 -3.5580 0.0011 12 6 1.2434 -4.8630 0.0022 13 7 2.1979 -5.9796 0.0027 14 6 2.7485 -6.2075 1.3606 15 6 2.3993 -7.7172 1.6907 16 1 2.9913 -8.1957 2.4708 17 6 2.4840 -8.3314 0.2438 18 6 1.5271 -7.2590 -0.3903 19 1 1.2986 -7.3762 -1.4496 20 6 0.3211 -7.3729 0.5928 21 7 0.9218 -7.7007 1.9036 22 6 0.2676 -7.9323 3.0590 23 8 0.8902 -8.1917 4.0669 24 6 -1.2375 -7.8689 3.0984 25 6 -1.7237 -8.1693 4.5177 26 6 -3.2289 -8.1052 4.5572 27 6 -3.9972 -6.9704 4.8361 28 7 -5.2602 -7.3064 4.7737 29 7 -5.3353 -8.6702 4.4626 30 1 -6.1490 -9.1877 4.3579 31 6 -4.0756 -9.1371 4.3349 32 1 -0.4850 0.8401 -0.0004 33 1 0.3532 -2.3906 0.0016 34 1 0.6165 -4.9209 -0.8876 35 1 0.6171 -4.9204 0.8923 36 1 3.8289 -6.0626 1.3603 37 1 2.2773 -5.5355 2.0778 38 1 2.0700 -9.3383 0.1926 39 1 3.4921 -8.2826 -0.1679 40 1 -0.3521 -8.1691 0.2753 41 1 -0.2130 -6.4243 0.6480 42 1 -1.6505 -8.6060 2.4097 43 1 -1.5671 -6.8723 2.8044 44 1 -1.3109 -7.4324 5.2067 45 1 -1.3943 -9.1659 4.8113 46 1 -3.6142 -5.9858 5.0606 47 1 -3.7938 -10.1525 4.0981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267713261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:31 Heat of formation + Delta-G solvation = 47.936815 kcal Electronic energy + Delta-G solvation = -30343.572654 eV Core-core repulsion = 26143.264227 eV Total energy + Delta-G solvation = -4200.308427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48175 -41.15178 -38.84972 -37.81542 -34.20716 -34.17052 -33.57559 -31.64080 -31.37538 -30.94973 -29.75135 -29.20909 -26.61602 -25.36626 -24.46648 -23.85990 -22.27129 -21.33907 -20.55639 -20.19641 -19.45777 -18.50190 -18.13918 -17.78948 -17.18312 -16.76724 -16.04102 -15.68570 -15.24314 -14.91057 -14.82346 -14.64074 -14.45120 -14.19395 -13.83359 -13.60632 -13.37059 -13.30697 -12.82450 -12.80304 -12.59829 -12.41173 -12.20414 -12.08949 -12.03802 -11.60773 -11.51163 -11.40283 -11.31617 -11.19158 -11.09419 -10.83775 -10.79282 -10.37953 -10.19917 -9.96536 -9.92244 -9.48125 -8.85468 -8.78006 -8.42533 -7.94981 -7.89947 -6.39791 -3.80354 1.58897 2.44371 2.56398 2.61017 2.83043 3.19324 3.27882 3.33719 3.79589 3.92475 4.14954 4.21996 4.35032 4.45374 4.57870 4.62804 4.64123 4.84557 4.88981 4.97534 5.03776 5.16521 5.21828 5.24625 5.31173 5.34752 5.42786 5.46440 5.56011 5.63375 5.65499 5.72114 5.75809 5.77385 5.93286 5.96069 6.03141 6.05847 6.28182 6.30169 6.35719 6.94440 6.94994 7.11852 7.35461 7.44064 7.57144 8.07869 8.08213 8.64061 9.20646 9.56549 10.08816 10.78095 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008807 B = 0.002765 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.693049 B =10125.464239 C =12525.078096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.445 3.555 11 O -0.575 6.575 12 C 0.036 3.964 13 N -0.488 5.488 14 C 0.042 3.958 15 C 0.106 3.894 16 H 0.126 0.874 17 C -0.131 4.131 18 C 0.053 3.947 19 H 0.134 0.866 20 C 0.060 3.940 21 N -0.622 5.622 22 C 0.530 3.470 23 O -0.543 6.543 24 C -0.130 4.130 25 C -0.024 4.024 26 C -0.234 4.234 27 C 0.058 3.942 28 N -0.296 5.296 29 N -0.480 5.480 30 H 0.438 0.562 31 C 0.059 3.941 32 H 0.271 0.729 33 H 0.391 0.609 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.185 0.815 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.804 -22.075 3.689 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.230 3.770 11 O -0.458 6.458 12 C -0.096 4.096 13 N -0.211 5.211 14 C -0.086 4.086 15 C 0.003 3.997 16 H 0.144 0.856 17 C -0.169 4.169 18 C -0.056 4.056 19 H 0.151 0.849 20 C -0.065 4.065 21 N -0.357 5.357 22 C 0.320 3.680 23 O -0.421 6.421 24 C -0.170 4.170 25 C -0.063 4.063 26 C -0.246 4.246 27 C -0.129 4.129 28 N -0.118 5.118 29 N -0.188 5.188 30 H 0.282 0.718 31 C -0.089 4.089 32 H 0.081 0.919 33 H 0.224 0.776 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.202 0.798 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.628 -21.473 4.076 23.497 hybrid contribution -0.697 0.263 0.272 0.793 sum -9.325 -21.210 4.348 23.573 Atomic orbital electron populations 1.69609 1.05910 1.28090 1.50842 1.25239 0.95627 0.99655 0.97430 0.85874 0.79250 0.80898 0.78374 1.20419 1.20958 1.19445 1.19680 0.93321 0.82205 1.47453 0.87984 1.41855 1.09097 1.04576 1.64864 1.19718 0.88440 0.84420 0.84461 1.90523 1.13643 1.86961 1.54634 1.22133 0.94219 0.91838 1.01422 1.64569 1.30822 1.01488 1.24234 1.24077 1.02018 0.93372 0.89173 1.24699 0.81068 0.96931 0.97050 0.85606 1.23933 1.01138 0.97488 0.94325 1.24761 0.91570 0.90573 0.98665 0.84872 1.23362 0.97746 1.01471 0.83885 1.49344 1.07804 1.69784 1.08777 1.20445 0.90103 0.75905 0.81549 1.90701 1.69532 1.48989 1.32855 1.21674 0.91189 1.04356 0.99780 1.19592 0.88286 1.03454 0.95011 1.20158 0.96666 0.93171 1.14607 1.23939 0.89964 1.00014 0.98938 1.77373 1.20469 0.91320 1.22630 1.46322 1.07413 1.08322 1.56757 0.71823 1.22414 0.84832 1.00034 1.01609 0.91924 0.77618 0.89372 0.92922 0.88969 0.92057 0.89967 0.88457 0.91044 0.90151 0.89275 0.88851 0.90218 0.90697 0.79830 0.80772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.57 -14.25 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.37 7.67 -10.99 -0.08 10.28 16 11 O -0.57 -15.53 15.58 5.55 0.09 -15.44 16 12 C 0.04 0.60 4.07 -4.98 -0.02 0.58 16 13 N -0.49 -7.47 4.81 -216.50 -1.04 -8.51 16 14 C 0.04 0.65 5.70 -0.06 0.00 0.65 16 15 C 0.11 1.27 5.34 -60.98 -0.33 0.94 16 16 H 0.13 1.50 8.05 -51.93 -0.42 1.08 16 17 C -0.13 -1.25 6.85 -22.11 -0.15 -1.40 16 18 C 0.05 0.56 5.14 -62.31 -0.32 0.24 16 19 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 20 C 0.06 0.58 5.64 -1.68 -0.01 0.57 16 21 N -0.62 -7.21 2.95 -155.09 -0.46 -7.67 16 22 C 0.53 6.59 7.89 -10.99 -0.09 6.50 16 23 O -0.54 -8.60 16.32 5.56 0.09 -8.51 16 24 C -0.13 -1.19 4.97 -27.88 -0.14 -1.32 16 25 C -0.02 -0.22 4.99 -27.88 -0.14 -0.36 16 26 C -0.23 -2.05 5.35 -105.05 -0.56 -2.61 16 27 C 0.06 0.58 11.96 -17.37 -0.21 0.37 16 28 N -0.30 -3.18 12.70 30.62 0.39 -2.79 16 29 N -0.48 -3.59 7.36 30.45 0.22 -3.37 16 30 H 0.44 1.86 8.96 -182.61 -1.64 0.23 16 31 C 0.06 0.40 11.90 -17.22 -0.20 0.20 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 34 H 0.09 1.30 8.00 -51.93 -0.42 0.88 16 35 H 0.05 0.84 6.17 -51.93 -0.32 0.52 16 36 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.06 1.08 7.40 -51.93 -0.38 0.69 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.84 5.55 -51.93 -0.29 0.55 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 45 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 46 H 0.18 1.53 8.06 -52.48 -0.42 1.10 16 47 H 0.18 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -36.09 388.39 -9.65 -45.73 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -7.94 Total: 10.01 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -2.49 Total: 6.69 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.22 Total: -60.46 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.18 Total: -23.96 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.09 -9.65 -45.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267713261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.670 kcal (2) G-P(sol) polarization free energy of solvation -36.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds