Wall clock time and date at job start Wed Apr 1 2020 05:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00374 * 2 1 4 4 H 1.48508 * 109.46623 * 269.99953 * 3 2 1 5 5 H 1.48499 * 109.47230 * 29.99673 * 3 2 1 6 6 H 1.48493 * 109.47293 * 150.00169 * 3 2 1 7 7 C 1.38946 * 119.99421 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99832 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00405 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00334 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99810 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00098 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47030 * 180.02562 * 12 10 9 14 14 C 1.48290 * 111.00297 * 78.75419 * 13 12 10 15 15 C 1.58431 * 104.80006 * 122.84947 * 14 13 12 16 16 H 1.08997 * 116.59921 * 159.57921 * 15 14 13 17 17 C 1.57415 * 99.69474 * 32.39123 * 15 14 13 18 18 C 1.49710 * 110.99987 * 196.35366 * 13 12 10 19 19 H 1.08998 * 116.16272 * 75.28633 * 18 13 12 20 20 C 1.56017 * 104.08438 * 306.12323 * 18 13 12 21 21 N 1.47870 * 105.11204 * 287.95582 * 20 18 13 22 22 C 1.34776 * 126.92537 * 181.91468 * 21 20 18 23 23 O 1.21276 * 119.99839 * 180.02562 * 22 21 20 24 24 C 1.50696 * 120.00078 * 0.02562 * 22 21 20 25 25 C 1.53002 * 109.47162 * 179.97438 * 24 22 21 26 26 C 1.50706 * 109.46998 * 179.97438 * 25 24 22 27 27 C 1.39858 * 126.04258 * 269.69216 * 26 25 24 28 28 N 1.30842 * 108.20303 * 179.82098 * 27 26 25 29 29 N 1.40084 * 108.20382 * 0.43837 * 28 27 26 30 30 H 0.96996 * 126.04043 * 179.69267 * 29 28 27 31 31 C 1.34955 * 107.92574 * 359.72056 * 29 28 27 32 32 H 0.97004 * 119.99644 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99790 * 0.02562 * 9 7 2 34 34 H 1.08998 * 109.47011 * 60.00409 * 12 10 9 35 35 H 1.08995 * 109.46997 * 300.00438 * 12 10 9 36 36 H 1.09005 * 110.32318 * 241.44485 * 14 13 12 37 37 H 1.08998 * 110.31769 * 3.54250 * 14 13 12 38 38 H 1.08997 * 112.53120 * 192.25269 * 17 15 14 39 39 H 1.09003 * 112.30327 * 64.74545 * 17 15 14 40 40 H 1.08994 * 110.31663 * 169.04475 * 20 18 13 41 41 H 1.08999 * 110.31452 * 46.86183 * 20 18 13 42 42 H 1.08999 * 109.47473 * 60.00010 * 24 22 21 43 43 H 1.09000 * 109.47359 * 299.99984 * 24 22 21 44 44 H 1.09006 * 109.47047 * 60.00377 * 25 24 22 45 45 H 1.08997 * 109.47445 * 299.99903 * 25 24 22 46 46 H 1.08004 * 125.90100 * 0.02562 * 27 26 25 47 47 H 1.07998 * 126.12582 * 179.97438 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0462 -1.4002 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4400 0.7000 7 6 2.0087 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0016 10 6 1.9970 -3.5580 0.0016 11 8 3.2099 -3.5580 0.0011 12 6 1.2434 -4.8630 0.0022 13 7 2.1979 -5.9796 0.0027 14 6 2.7485 -6.2075 1.3606 15 6 2.3993 -7.7172 1.6907 16 1 2.9913 -8.1957 2.4708 17 6 2.4840 -8.3314 0.2438 18 6 1.5271 -7.2590 -0.3903 19 1 1.2986 -7.3762 -1.4496 20 6 0.3211 -7.3729 0.5928 21 7 0.9218 -7.7007 1.9036 22 6 0.2676 -7.9323 3.0590 23 8 0.8902 -8.1917 4.0669 24 6 -1.2375 -7.8689 3.0984 25 6 -1.7237 -8.1693 4.5177 26 6 -3.2289 -8.1052 4.5572 27 6 -3.9972 -6.9704 4.8361 28 7 -5.2602 -7.3064 4.7737 29 7 -5.3353 -8.6702 4.4626 30 1 -6.1490 -9.1877 4.3579 31 6 -4.0756 -9.1371 4.3349 32 1 -0.4850 0.8401 -0.0004 33 1 0.3532 -2.3906 0.0016 34 1 0.6165 -4.9209 -0.8876 35 1 0.6171 -4.9204 0.8923 36 1 3.8289 -6.0626 1.3603 37 1 2.2773 -5.5355 2.0778 38 1 2.0700 -9.3383 0.1926 39 1 3.4921 -8.2826 -0.1679 40 1 -0.3521 -8.1691 0.2753 41 1 -0.2130 -6.4243 0.6480 42 1 -1.6505 -8.6060 2.4097 43 1 -1.5671 -6.8723 2.8044 44 1 -1.3109 -7.4324 5.2067 45 1 -1.3943 -9.1659 4.8113 46 1 -3.6142 -5.9858 5.0606 47 1 -3.7938 -10.1525 4.0981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267713261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:30 Heat of formation + Delta-G solvation = 20.109167 kcal Electronic energy + Delta-G solvation = -30344.779352 eV Core-core repulsion = 26143.264227 eV Total energy + Delta-G solvation = -4201.515125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.22795 -42.02800 -40.11126 -39.43020 -36.00304 -35.00383 -34.86264 -33.27568 -32.34512 -32.06988 -30.71052 -29.93698 -28.14905 -26.28006 -26.00397 -24.90506 -22.93513 -22.30335 -21.54850 -21.10713 -20.78776 -19.99113 -19.40042 -18.78873 -18.05513 -18.03092 -17.26446 -16.88937 -16.49684 -16.35494 -15.96044 -15.69942 -15.43813 -15.40317 -15.17929 -14.87048 -14.48335 -14.17656 -13.91441 -13.68509 -13.62225 -13.56377 -13.43600 -13.32585 -13.05718 -12.98215 -12.91240 -12.53017 -12.41655 -12.31317 -12.15462 -12.10726 -12.06308 -12.02016 -11.48920 -11.47576 -10.93619 -10.59207 -10.35561 -9.99304 -9.75539 -9.41451 -9.11995 -8.45815 -5.94042 1.00131 1.37500 1.40945 1.53414 1.62279 1.73192 1.98945 2.07833 2.12108 2.28105 2.69123 3.20424 3.29522 3.35419 3.54592 3.63287 3.72405 3.93825 3.97062 4.06865 4.19893 4.24289 4.27026 4.27303 4.36722 4.50153 4.53939 4.57799 4.64577 4.71275 4.74865 4.78251 4.87742 4.91394 4.96105 4.98621 5.08194 5.21696 5.28614 5.35033 5.41387 5.69245 5.80397 5.87443 6.08351 6.48602 6.54459 6.62349 6.73413 7.14730 7.14840 7.58507 8.15246 8.71570 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008807 B = 0.002765 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.693049 B =10125.464239 C =12525.078096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.990 3.010 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.331 4.331 8 H 0.076 0.924 9 N -0.576 5.576 10 C 0.439 3.561 11 O -0.618 6.618 12 C 0.054 3.946 13 N -0.510 5.510 14 C 0.043 3.957 15 C 0.107 3.893 16 H 0.122 0.878 17 C -0.113 4.113 18 C 0.056 3.944 19 H 0.164 0.836 20 C 0.061 3.939 21 N -0.622 5.622 22 C 0.524 3.476 23 O -0.586 6.586 24 C -0.119 4.119 25 C -0.015 4.015 26 C -0.252 4.252 27 C 0.043 3.957 28 N -0.336 5.336 29 N -0.472 5.472 30 H 0.452 0.548 31 C 0.079 3.921 32 H 0.277 0.723 33 H 0.395 0.605 34 H 0.119 0.881 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.027 0.973 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.186 0.814 47 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.582 -24.344 2.177 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.461 4.461 8 H 0.094 0.906 9 N -0.214 5.214 10 C 0.227 3.773 11 O -0.503 6.503 12 C -0.078 4.078 13 N -0.234 5.234 14 C -0.086 4.086 15 C 0.003 3.997 16 H 0.140 0.860 17 C -0.151 4.151 18 C -0.051 4.051 19 H 0.181 0.819 20 C -0.062 4.062 21 N -0.356 5.356 22 C 0.315 3.685 23 O -0.467 6.467 24 C -0.159 4.159 25 C -0.054 4.054 26 C -0.264 4.264 27 C -0.143 4.143 28 N -0.159 5.159 29 N -0.181 5.181 30 H 0.298 0.702 31 C -0.070 4.070 32 H 0.086 0.914 33 H 0.229 0.771 34 H 0.137 0.863 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.130 0.870 41 H 0.093 0.907 42 H 0.137 0.863 43 H 0.112 0.888 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.203 0.797 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.461 -23.755 2.535 26.080 hybrid contribution -0.106 0.910 0.751 1.185 sum -10.567 -22.845 3.287 25.385 Atomic orbital electron populations 1.69665 1.06717 1.29189 1.50551 1.25984 0.96539 1.02242 0.96430 0.84976 0.77840 0.77115 0.78713 1.19456 1.19570 1.20039 1.19610 0.92557 0.84105 1.49802 0.90625 1.41930 1.09232 1.04691 1.65580 1.20930 0.88357 0.86060 0.82001 1.90489 1.15921 1.87942 1.55966 1.21929 0.93704 0.88851 1.03289 1.64451 1.31735 1.03338 1.23920 1.23911 1.00366 0.95392 0.88906 1.24617 0.81726 0.94528 0.98847 0.86045 1.23907 1.01273 0.98416 0.91513 1.25043 0.91784 0.87829 1.00421 0.81906 1.23479 0.97672 1.02701 0.82397 1.49437 1.07551 1.69112 1.09540 1.21070 0.91383 0.75008 0.80998 1.90681 1.70625 1.51049 1.34348 1.21665 0.88541 1.05254 1.00403 1.19435 0.88593 1.02771 0.94639 1.20146 0.96419 0.93523 1.16298 1.24126 0.90207 1.00787 0.99144 1.77310 1.20951 0.93264 1.24339 1.46370 1.08496 1.07467 1.55806 0.70200 1.22965 0.83928 1.01047 0.99028 0.91357 0.77081 0.86306 0.91823 0.91322 0.95415 0.87010 0.88524 0.87049 0.90734 0.86276 0.88800 0.92531 0.90511 0.79748 0.76874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.91 13.05 21.66 0.28 -49.63 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 3 Si 0.99 43.57 29.55 68.60 2.03 45.60 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.33 -19.05 9.68 84.04 0.81 -18.23 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 9 N -0.58 -29.77 5.29 -306.98 -1.62 -31.39 16 10 C 0.44 21.01 7.67 87.66 0.67 21.68 16 11 O -0.62 -34.82 15.58 -3.07 -0.05 -34.86 16 12 C 0.05 1.77 4.07 85.56 0.35 2.12 16 13 N -0.51 -15.17 4.81 -838.88 -4.04 -19.20 16 14 C 0.04 1.37 5.70 87.98 0.50 1.87 16 15 C 0.11 2.47 5.34 47.95 0.26 2.72 16 16 H 0.12 2.91 8.05 -2.39 -0.02 2.89 16 17 C -0.11 -1.82 6.85 33.59 0.23 -1.59 16 18 C 0.06 0.99 5.14 46.85 0.24 1.23 16 19 H 0.16 1.98 8.14 -2.39 -0.02 1.96 16 20 C 0.06 0.95 5.64 87.16 0.49 1.44 16 21 N -0.62 -13.24 2.95 -762.98 -2.25 -15.49 16 22 C 0.52 12.39 7.89 87.66 0.69 13.08 16 23 O -0.59 -18.69 16.32 -3.02 -0.05 -18.74 16 24 C -0.12 -1.91 4.97 29.85 0.15 -1.76 16 25 C -0.02 -0.26 4.99 29.85 0.15 -0.11 16 26 C -0.25 -4.02 5.35 -20.14 -0.11 -4.12 16 27 C 0.04 0.85 11.96 85.23 1.02 1.86 16 28 N -0.34 -6.98 12.70 -57.03 -0.72 -7.70 16 29 N -0.47 -6.04 7.36 -57.58 -0.42 -6.46 16 30 H 0.45 2.77 8.96 -213.34 -1.91 0.85 16 31 C 0.08 0.84 11.90 83.54 0.99 1.84 16 32 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 33 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 34 H 0.12 3.19 8.00 -2.39 -0.02 3.17 16 35 H 0.06 1.98 6.17 -2.39 -0.01 1.97 16 36 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 37 H 0.03 1.03 7.40 -2.39 -0.02 1.01 16 38 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.30 5.55 -2.39 -0.01 1.29 16 42 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 1.22 8.10 -2.38 -0.02 1.20 16 45 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 46 H 0.19 3.24 8.06 -2.91 -0.02 3.21 16 47 H 0.21 0.47 8.06 -2.91 -0.02 0.45 16 Total: -1.00 -82.73 388.39 -1.54 -84.28 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -1.62 Total: 31.77 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 6.92 Total: 21.83 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -8.77 Total: -129.87 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -0.10 Total: -53.61 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -82.73 -1.54 -84.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267713261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.385 kcal (2) G-P(sol) polarization free energy of solvation -82.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds