Wall clock time and date at job start Wed Apr 1 2020 05:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86797 * 119.99642 * 2 1 4 4 H 1.48507 * 109.47177 * 270.00405 * 3 2 1 5 5 H 1.48500 * 109.47164 * 30.00002 * 3 2 1 6 6 H 1.48494 * 109.47149 * 150.00437 * 3 2 1 7 7 C 1.38946 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00016 * 359.97438 * 7 2 1 9 9 N 1.37094 * 120.00402 * 179.97438 * 7 2 1 10 10 C 1.34771 * 120.00499 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99974 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00166 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.46958 * 180.02562 * 12 10 9 14 14 C 1.46909 * 110.99842 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46967 * 174.65040 * 14 13 12 16 16 N 1.46505 * 110.01519 * 304.20491 * 15 14 13 17 17 C 1.34777 * 119.99719 * 301.33025 * 16 15 14 18 18 O 1.21516 * 120.00173 * 354.97426 * 17 16 15 19 19 C 1.48153 * 119.99975 * 174.97420 * 17 16 15 20 20 C 1.39714 * 120.18521 * 179.72030 * 19 17 16 21 21 C 1.38830 * 117.89790 * 179.76146 * 20 19 17 22 22 C 1.38572 * 118.06656 * 0.52972 * 21 20 19 23 23 N 1.32175 * 120.06780 * 359.70455 * 22 21 20 24 24 N 1.28350 * 122.29994 * 0.02562 * 23 22 21 25 25 C 1.54262 * 110.02984 * 182.76248 * 15 14 13 26 26 C 1.54889 * 104.19689 * 217.10655 * 25 15 14 27 27 C 1.54892 * 102.74820 * 37.93990 * 26 25 15 28 28 C 1.53867 * 110.03320 * 65.59418 * 15 14 13 29 29 H 0.96998 * 120.00463 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99340 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47065 * 60.00475 * 12 10 9 32 32 H 1.09006 * 109.47212 * 300.00168 * 12 10 9 33 33 H 1.00897 * 111.00346 * 56.04736 * 13 12 10 34 34 H 1.08993 * 109.46937 * 294.65140 * 14 13 12 35 35 H 1.09002 * 109.46680 * 54.65180 * 14 13 12 36 36 H 0.96995 * 119.99685 * 121.33832 * 16 15 14 37 37 H 1.07995 * 121.05142 * 0.02562 * 20 19 17 38 38 H 1.08000 * 120.96248 * 180.23051 * 21 20 19 39 39 H 1.07996 * 119.96025 * 179.72494 * 22 21 20 40 40 H 1.09001 * 110.48972 * 335.78316 * 25 15 14 41 41 H 1.09000 * 110.49093 * 98.42415 * 25 15 14 42 42 H 1.09003 * 110.75320 * 279.62850 * 26 25 15 43 43 H 1.08993 * 110.75966 * 156.25838 * 26 25 15 44 44 H 1.08998 * 110.48809 * 203.38089 * 27 26 25 45 45 H 1.09003 * 110.48553 * 80.73988 * 27 26 25 46 46 H 1.09000 * 110.03624 * 238.57064 * 28 15 14 47 47 H 1.09009 * 110.03637 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.6999 7 6 2.0090 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0539 -2.3704 -0.0011 11 8 3.4475 -3.4209 -0.0011 12 6 5.5609 -2.3704 -0.0011 13 7 6.0505 -3.7553 -0.0017 14 6 7.5191 -3.7944 -0.0011 15 6 7.9906 -5.2439 0.1327 16 7 7.4113 -5.8507 1.3338 17 6 7.6439 -5.3048 2.5438 18 8 8.4069 -4.3650 2.6498 19 6 6.9695 -5.8505 3.7448 20 6 7.2124 -5.2913 5.0019 21 6 6.5512 -5.8365 6.0941 22 6 5.7005 -6.9078 5.8731 23 7 5.5323 -7.3784 4.6494 24 7 6.1352 -6.8774 3.6331 25 6 9.5307 -5.2940 0.2044 26 6 9.9065 -6.5700 -0.5891 27 6 8.8882 -6.5592 -1.7561 28 6 7.5820 -6.0482 -1.1137 29 1 -0.4851 0.8400 0.0004 30 1 3.8649 -0.3631 -0.0007 31 1 5.9242 -1.8566 0.8889 32 1 5.9242 -1.8565 -0.8911 33 1 5.6751 -4.2713 -0.7833 34 1 7.8941 -3.3751 -0.9346 35 1 7.8977 -3.2103 0.8377 36 1 6.8604 -6.6455 1.2580 37 1 7.8897 -4.4584 5.1196 38 1 6.6994 -5.4403 7.0878 39 1 5.1741 -7.3583 6.7015 40 1 9.9635 -4.4111 -0.2660 41 1 9.8621 -5.3770 1.2395 42 1 9.7782 -7.4599 0.0272 43 1 10.9270 -6.5039 -0.9662 44 1 8.7506 -7.5655 -2.1518 45 1 9.2172 -5.8806 -2.5432 46 1 6.9535 -6.8907 -0.8250 47 1 7.0482 -5.4060 -1.8143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267844860.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:04 Heat of formation + Delta-G solvation = -5.389322 kcal Electronic energy + Delta-G solvation = -30727.591328 eV Core-core repulsion = 26524.970506 eV Total energy + Delta-G solvation = -4202.620822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37802 -40.29533 -38.42247 -37.89671 -35.07880 -33.95893 -33.77364 -33.29832 -32.63376 -31.63329 -29.45356 -29.00666 -26.75555 -25.48414 -24.77451 -24.31091 -22.96150 -21.80608 -20.66216 -19.57847 -19.28145 -18.37117 -18.32543 -17.49022 -16.96215 -16.58167 -15.84222 -15.73359 -15.57366 -15.21133 -15.14571 -14.81076 -14.39451 -14.24955 -13.95619 -13.90137 -13.49357 -13.39186 -13.26056 -13.04620 -12.77917 -12.24217 -12.07693 -11.95917 -11.71345 -11.64508 -11.43578 -11.32335 -11.21865 -11.13872 -10.84631 -10.76980 -10.57916 -10.55318 -10.26359 -10.05392 -9.95742 -9.91085 -9.54757 -9.03510 -8.52953 -8.16472 -8.06359 -6.29096 -3.80298 0.26916 0.51931 2.56499 2.92332 3.04568 3.08039 3.16032 3.52603 3.70528 3.77869 4.05405 4.12251 4.18476 4.29994 4.40069 4.43310 4.45238 4.68176 4.71998 4.85814 4.93211 5.09642 5.17111 5.23703 5.24650 5.38931 5.42323 5.47931 5.53271 5.59695 5.64341 5.67507 5.70503 5.77554 5.82581 5.85789 5.87842 5.98028 5.99766 6.07545 6.12444 6.52996 7.13292 7.45436 7.60565 7.65365 8.07789 8.17012 8.35801 8.62454 8.97359 9.44972 9.85971 10.84143 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008626 B = 0.003246 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.232269 B = 8624.538103 C =10714.853923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.592 5.592 10 C 0.451 3.549 11 O -0.563 6.563 12 C 0.050 3.950 13 N -0.663 5.663 14 C 0.047 3.953 15 C 0.181 3.819 16 N -0.678 5.678 17 C 0.587 3.413 18 O -0.532 6.532 19 C 0.030 3.970 20 C -0.067 4.067 21 C -0.123 4.123 22 C 0.053 3.947 23 N -0.240 5.240 24 N -0.206 5.206 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.127 4.127 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.347 0.653 34 H 0.036 0.964 35 H 0.091 0.909 36 H 0.411 0.589 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.177 0.823 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.323 -11.648 6.057 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.232 5.232 10 C 0.237 3.763 11 O -0.444 6.444 12 C -0.083 4.083 13 N -0.296 5.296 14 C -0.083 4.083 15 C 0.095 3.905 16 N -0.328 5.328 17 C 0.370 3.630 18 O -0.408 6.408 19 C -0.116 4.116 20 C -0.097 4.097 21 C -0.152 4.152 22 C -0.110 4.110 23 N -0.083 5.083 24 N -0.053 5.053 25 C -0.164 4.164 26 C -0.163 4.163 27 C -0.161 4.161 28 C -0.165 4.165 29 H 0.083 0.917 30 H 0.203 0.797 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.167 0.833 34 H 0.054 0.946 35 H 0.110 0.890 36 H 0.247 0.753 37 H 0.179 0.821 38 H 0.175 0.825 39 H 0.194 0.806 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 21.430 -12.723 5.771 25.582 hybrid contribution 0.919 2.536 0.203 2.705 sum 22.349 -10.188 5.974 25.277 Atomic orbital electron populations 1.69625 1.05619 1.27440 1.49581 1.25030 0.95487 0.97935 0.97716 0.86676 0.79821 0.84079 0.78858 1.19651 1.20175 1.19498 1.19431 0.79276 0.96612 1.47942 0.86327 1.42209 1.07508 1.06163 1.67273 1.19732 0.88225 0.84555 0.83836 1.90566 1.69441 1.30897 1.53538 1.21683 0.94906 0.90561 1.01162 1.59948 1.05824 1.12518 1.51273 1.22451 0.88766 0.95713 1.01366 1.21034 0.92774 0.92654 0.84056 1.45735 1.51491 1.30752 1.04808 1.17376 0.80809 0.82468 0.82340 1.90737 1.36374 1.27928 1.85804 1.22919 0.97418 0.95901 0.95404 1.22438 0.97037 0.98723 0.91469 1.22454 0.95751 0.96133 1.00900 1.24515 0.95165 0.93879 0.97438 1.73153 1.15611 1.22743 0.96749 1.73220 1.02154 1.06592 1.23382 1.22708 0.93656 0.98242 1.01773 1.22521 0.98843 0.98058 0.96848 1.22365 0.94647 1.01261 0.97786 1.22470 0.98215 1.00096 0.95742 0.91655 0.79735 0.89682 0.93883 0.83284 0.94551 0.89038 0.75257 0.82103 0.82543 0.80576 0.90615 0.90175 0.91518 0.91465 0.91316 0.91377 0.90341 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.19 13.96 55.50 0.77 -25.41 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.78 27.74 -169.99 -4.71 15.06 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 7 C -0.30 -8.79 10.16 -14.94 -0.15 -8.95 16 8 H 0.12 3.92 7.39 -52.48 -0.39 3.53 16 9 N -0.59 -14.53 5.09 -10.97 -0.06 -14.59 16 10 C 0.45 10.58 7.82 -10.99 -0.09 10.50 16 11 O -0.56 -15.48 15.78 5.55 0.09 -15.39 16 12 C 0.05 0.87 6.16 -4.98 -0.03 0.84 16 13 N -0.66 -10.64 5.84 -115.05 -0.67 -11.32 16 14 C 0.05 0.61 4.05 -3.82 -0.02 0.60 16 15 C 0.18 1.99 0.68 -130.70 -0.09 1.90 16 16 N -0.68 -8.26 4.88 -47.41 -0.23 -8.49 16 17 C 0.59 8.00 7.03 -12.19 -0.09 7.91 16 18 O -0.53 -7.92 13.17 5.35 0.07 -7.85 16 19 C 0.03 0.39 6.83 -82.83 -0.57 -0.18 16 20 C -0.07 -0.69 9.73 -38.81 -0.38 -1.07 16 21 C -0.12 -0.97 10.20 -39.24 -0.40 -1.37 16 22 C 0.05 0.47 11.31 -17.28 -0.20 0.28 16 23 N -0.24 -3.11 11.51 30.58 0.35 -2.75 16 24 N -0.21 -2.88 10.76 33.32 0.36 -2.52 16 25 C -0.12 -1.22 5.58 -25.07 -0.14 -1.36 16 26 C -0.13 -0.98 6.91 -24.74 -0.17 -1.15 16 27 C -0.12 -0.94 6.83 -25.07 -0.17 -1.11 16 28 C -0.13 -1.19 5.82 -25.62 -0.15 -1.34 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.37 8.03 5.76 -40.82 -0.24 7.79 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.35 5.64 7.15 -39.29 -0.28 5.36 16 34 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 1.34 6.40 -51.93 -0.33 1.00 16 36 H 0.41 4.85 7.44 -40.82 -0.30 4.55 16 37 H 0.16 1.44 7.72 -52.49 -0.41 1.03 16 38 H 0.16 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.08 0.70 7.85 -51.93 -0.41 0.30 16 41 H 0.08 0.90 6.43 -51.93 -0.33 0.57 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.73 7.44 -51.93 -0.39 0.34 16 47 H 0.08 0.75 6.81 -51.92 -0.35 0.40 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -35.94 385.89 -7.34 -43.28 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -6.40 Total: 17.62 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -2.73 Total: 6.55 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: 0.53 Total: -65.09 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.16 Total: -23.24 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.71 Total: 15.06 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.94 -7.34 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267844860.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.890 kcal (2) G-P(sol) polarization free energy of solvation -35.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds