Wall clock time and date at job start Wed Apr 1 2020 04:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48495 * 109.47201 * 240.00824 * 3 2 1 5 5 H 1.48506 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47090 * 120.00481 * 3 2 1 7 7 C 1.38951 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99557 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00193 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99807 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99855 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46800 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.47196 * 64.99805 * 15 14 13 17 17 N 1.46503 * 109.47269 * 304.99927 * 15 14 13 18 18 C 1.34776 * 119.99914 * 300.00349 * 17 15 14 19 19 O 1.21281 * 119.99955 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99896 * 180.02562 * 18 17 15 21 21 F 1.39898 * 109.47443 * 54.99439 * 20 18 17 22 22 F 1.39899 * 109.47149 * 174.99575 * 20 18 17 23 23 C 1.52997 * 109.47504 * 184.99955 * 15 14 13 24 24 C 1.53000 * 109.46704 * 300.00016 * 23 15 14 25 25 C 1.53005 * 109.47029 * 179.97438 * 24 23 15 26 26 C 1.53001 * 109.46939 * 59.99699 * 25 24 23 27 27 C 1.52991 * 109.47684 * 300.00395 * 26 25 24 28 28 C 1.52997 * 109.47504 * 179.97438 * 23 15 14 29 29 H 0.96998 * 120.00315 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00240 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47455 * 60.00021 * 12 10 9 32 32 H 1.09003 * 109.47449 * 299.99253 * 12 10 9 33 33 H 1.00908 * 110.99583 * 303.94914 * 13 12 10 34 34 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 35 35 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 36 36 H 0.97005 * 119.99783 * 119.99703 * 17 15 14 37 37 H 1.09006 * 109.46857 * 294.99348 * 20 18 17 38 38 H 1.09002 * 109.47016 * 59.99741 * 23 15 14 39 39 H 1.08993 * 109.47376 * 299.99617 * 24 23 15 40 40 H 1.08992 * 109.47261 * 60.00195 * 24 23 15 41 41 H 1.09002 * 109.47110 * 299.99981 * 25 24 23 42 42 H 1.08994 * 109.47689 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.47255 * 179.97438 * 26 25 24 44 44 H 1.09006 * 109.46733 * 60.00638 * 26 25 24 45 45 H 1.09006 * 109.47233 * 299.99936 * 27 26 25 46 46 H 1.09004 * 109.47763 * 179.97438 * 27 26 25 47 47 H 1.09004 * 109.47346 * 300.00076 * 28 23 15 48 48 H 1.09002 * 109.47196 * 59.99850 * 28 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0004 14 6 1.4982 -7.2708 -0.0015 15 6 2.5231 -8.4068 -0.0014 16 1 3.0883 -8.3861 0.9304 17 7 3.4393 -8.2381 -1.1321 18 6 2.9607 -8.2315 -2.3920 19 8 1.7716 -8.3656 -2.5897 20 6 3.9032 -8.0586 -3.5551 21 9 4.9074 -9.0305 -3.4902 22 9 3.1954 -8.1988 -4.7537 23 6 1.7980 -9.7480 -0.1283 24 6 0.8412 -9.9241 1.0526 25 6 0.1156 -11.2652 0.9254 26 6 1.1402 -12.4014 0.9252 27 6 2.0970 -12.2253 -0.2556 28 6 2.8229 -10.8839 -0.1288 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6175 -4.9205 -0.8913 32 1 0.6169 -4.9209 0.8887 33 1 2.8339 -5.9124 -0.7814 34 1 0.8723 -7.3455 0.8878 35 1 0.8743 -7.3450 -0.8922 36 1 4.3903 -8.1311 -0.9739 37 1 4.3539 -7.0670 -3.5132 38 1 1.2328 -9.7687 -1.0601 39 1 1.4064 -9.9034 1.9843 40 1 0.1111 -9.1150 1.0525 41 1 -0.4497 -11.2855 -0.0063 42 1 -0.5664 -11.3905 1.7664 43 1 0.6232 -13.3568 0.8351 44 1 1.7054 -12.3811 1.8570 45 1 1.5317 -12.2456 -1.1874 46 1 2.8272 -13.0346 -0.2555 47 1 3.5043 -10.7583 -0.9703 48 1 3.3885 -10.8634 0.8028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268116517.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:52 Heat of formation + Delta-G solvation = -193.246982 kcal Electronic energy + Delta-G solvation = -31722.405681 eV Core-core repulsion = 27060.949553 eV Total energy + Delta-G solvation = -4661.456128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.40135 -47.42374 -40.70108 -38.50381 -38.25568 -36.13938 -34.39337 -33.73707 -32.04575 -31.22910 -30.94853 -28.92304 -27.80811 -25.76801 -24.09867 -23.17646 -22.19958 -22.06218 -20.30868 -20.02800 -19.26329 -18.77547 -18.04689 -17.89289 -17.66435 -16.33957 -16.12452 -15.88522 -15.53271 -15.26673 -14.64912 -14.57165 -14.45901 -14.34072 -14.28645 -14.19238 -13.85892 -13.76415 -13.59401 -13.45343 -13.37786 -12.69156 -12.64494 -12.39096 -12.36284 -12.13686 -11.94265 -11.76250 -11.51230 -11.46320 -11.34303 -11.20002 -11.02949 -10.77568 -10.46113 -10.44664 -10.23822 -10.22588 -9.92592 -9.51843 -9.38999 -8.46256 -8.06707 -7.97585 -6.43083 -3.84235 1.90216 2.35320 3.18611 3.24624 3.28638 3.57760 3.81555 3.88717 4.01052 4.21933 4.29596 4.43209 4.49808 4.52595 4.58091 4.87367 4.96739 5.06908 5.13688 5.15618 5.20027 5.25592 5.29955 5.31951 5.36101 5.47484 5.56337 5.68645 5.77399 5.81370 5.87023 5.88933 5.91339 5.96541 5.98106 6.01573 6.08374 6.17983 6.24623 6.33975 6.99416 7.15991 7.53182 7.58278 7.63491 8.04049 8.59255 9.15738 9.52477 10.03514 10.74537 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.002547 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.865620 B =10989.597303 C =12514.795642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.441 3.559 11 O -0.586 6.586 12 C 0.050 3.950 13 N -0.665 5.665 14 C 0.036 3.964 15 C 0.159 3.841 16 H 0.102 0.898 17 N -0.704 5.704 18 C 0.473 3.527 19 O -0.496 6.496 20 C 0.253 3.747 21 F -0.190 7.190 22 F -0.176 7.176 23 C -0.105 4.105 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.110 4.110 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.342 0.658 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.410 0.590 37 H 0.140 0.860 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.437 -23.435 -0.904 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.226 3.774 11 O -0.471 6.471 12 C -0.083 4.083 13 N -0.297 5.297 14 C -0.094 4.094 15 C 0.055 3.945 16 H 0.120 0.880 17 N -0.355 5.355 18 C 0.254 3.746 19 O -0.369 6.369 20 C 0.195 3.805 21 F -0.171 7.171 22 F -0.157 7.157 23 C -0.125 4.125 24 C -0.151 4.151 25 C -0.156 4.156 26 C -0.156 4.156 27 C -0.156 4.156 28 C -0.148 4.148 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.161 0.839 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.245 0.755 37 H 0.157 0.843 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.327 -23.364 -0.384 23.603 hybrid contribution -0.069 0.877 -0.945 1.291 sum 3.258 -22.487 -1.329 22.761 Atomic orbital electron populations 1.69605 1.05950 1.28318 1.50356 1.25274 0.95637 0.99750 0.97261 0.85913 0.78765 0.80444 0.79062 1.19912 1.20957 1.19869 1.19644 0.93317 0.82237 1.47827 0.87983 1.41861 1.09236 1.04607 1.64165 1.19788 0.88356 0.84702 0.84511 1.90498 1.13749 1.87114 1.55712 1.21672 0.94407 0.90911 1.01291 1.60126 1.18790 0.99925 1.50832 1.22472 0.95909 0.88691 1.02343 1.21260 0.91070 0.94117 0.88076 0.87972 1.45888 1.12184 1.72382 1.05088 1.21041 0.89831 0.78683 0.85011 1.90777 1.15229 1.46451 1.84458 1.21764 0.82553 0.93643 0.82493 1.93044 1.61308 1.66323 1.96446 1.93062 1.79421 1.96860 1.46405 1.21597 0.97008 0.92890 1.00982 1.21578 0.98255 0.97518 0.97705 1.21514 0.97676 0.94545 1.01874 1.21533 0.97326 0.98207 0.98569 1.21514 0.98377 0.97072 0.98634 1.21529 0.97450 0.94049 1.01726 0.91773 0.77431 0.93900 0.89541 0.83884 0.89829 0.93063 0.75502 0.84334 0.88904 0.91739 0.91385 0.92010 0.92007 0.92342 0.92055 0.92136 0.92246 0.92209 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.36 9.68 -14.94 -0.14 -8.51 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -14.27 5.29 -10.97 -0.06 -14.33 16 10 C 0.44 10.35 7.82 -10.99 -0.09 10.27 16 11 O -0.59 -15.55 15.78 5.55 0.09 -15.47 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 13 N -0.66 -10.36 6.12 -115.06 -0.70 -11.06 16 14 C 0.04 0.44 4.45 -3.83 -0.02 0.43 16 15 C 0.16 1.53 2.49 -67.93 -0.17 1.36 16 16 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 17 N -0.70 -6.28 3.60 -53.81 -0.19 -6.47 16 18 C 0.47 5.19 6.90 -10.99 -0.08 5.11 16 19 O -0.50 -7.10 12.88 5.56 0.07 -7.03 16 20 C 0.25 2.36 5.72 36.01 0.21 2.57 16 21 F -0.19 -1.75 17.32 2.25 0.04 -1.71 16 22 F -0.18 -2.15 16.95 2.25 0.04 -2.11 16 23 C -0.11 -0.96 1.56 -90.62 -0.14 -1.10 16 24 C -0.11 -0.93 4.85 -26.73 -0.13 -1.06 16 25 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 26 C -0.12 -0.86 5.92 -26.74 -0.16 -1.02 16 27 C -0.12 -0.93 5.92 -26.71 -0.16 -1.08 16 28 C -0.11 -0.89 5.05 -26.71 -0.13 -1.03 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.34 5.49 7.44 -39.29 -0.29 5.19 16 34 H 0.08 0.96 6.71 -51.93 -0.35 0.62 16 35 H 0.05 0.72 6.32 -51.93 -0.33 0.39 16 36 H 0.41 2.72 8.83 -40.82 -0.36 2.36 16 37 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.09 6.17 -51.93 -0.32 0.77 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.60 6.54 -51.93 -0.34 0.26 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.52 7.60 -51.93 -0.39 0.12 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 390.51 15.07 5.88 5.88 Total: -1.00 -32.70 390.51 -7.72 -40.42 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -7.29 Total: 13.54 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.29 Total: 6.22 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.23 Total: -55.69 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.16 Total: -22.50 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.08 Total: -3.82 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.70 -7.72 -40.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268116517.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.826 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds