Wall clock time and date at job start Wed Apr 1 2020 04:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99702 * 2 1 4 4 H 1.48495 * 109.47260 * 270.00249 * 3 2 1 5 5 H 1.48498 * 109.47052 * 30.00691 * 3 2 1 6 6 H 1.48502 * 109.46664 * 150.00255 * 3 2 1 7 7 C 1.38804 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00450 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00267 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46874 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46966 * 294.99398 * 11 10 9 13 13 N 1.46496 * 109.47071 * 55.00036 * 11 10 9 14 14 C 1.34777 * 119.99687 * 204.72514 * 13 11 10 15 15 O 1.21287 * 120.00029 * 359.97438 * 14 13 11 16 16 C 1.50705 * 120.00213 * 179.97438 * 14 13 11 17 17 H 1.09003 * 109.50286 * 33.60465 * 16 14 13 18 18 C 1.53089 * 109.50867 * 273.47375 * 16 14 13 19 19 O 1.43014 * 109.26150 * 183.21527 * 18 16 14 20 20 C 1.43016 * 113.73513 * 58.66760 * 19 18 16 21 21 C 1.53100 * 109.25945 * 301.32777 * 20 19 18 22 22 N 1.47011 * 109.50509 * 153.68523 * 16 14 13 23 23 C 1.46898 * 111.00347 * 302.32982 * 22 16 14 24 24 C 1.53009 * 109.47006 * 163.34366 * 23 22 16 25 25 F 1.39897 * 109.46944 * 305.63762 * 24 23 22 26 26 F 1.39906 * 109.46878 * 65.63668 * 24 23 22 27 27 C 1.53002 * 109.46739 * 174.99817 * 11 10 9 28 28 C 1.52991 * 117.49758 * 248.74517 * 27 11 10 29 29 C 1.52999 * 117.49704 * 180.08299 * 27 11 10 30 30 H 0.97000 * 120.00255 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99533 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47168 * 59.99633 * 10 9 7 33 33 H 1.09000 * 109.46854 * 299.99939 * 10 9 7 34 34 H 0.96996 * 120.00544 * 24.99589 * 13 11 10 35 35 H 1.09006 * 109.50229 * 303.15094 * 18 16 14 36 36 H 1.09003 * 109.50781 * 63.27403 * 18 16 14 37 37 H 1.09008 * 109.50210 * 181.40083 * 20 19 18 38 38 H 1.09002 * 109.50936 * 61.26888 * 20 19 18 39 39 H 1.08997 * 109.50995 * 296.92149 * 21 20 19 40 40 H 1.08999 * 109.50713 * 176.78360 * 21 20 19 41 41 H 1.08996 * 109.47267 * 283.33985 * 23 22 16 42 42 H 1.09000 * 109.47196 * 43.34818 * 23 22 16 43 43 H 1.09003 * 109.46888 * 185.63408 * 24 23 22 44 44 H 1.08998 * 115.54860 * 34.41922 * 27 11 10 45 45 H 1.09000 * 117.50051 * 0.02562 * 28 27 11 46 46 H 1.09003 * 117.50078 * 145.02708 * 28 27 11 47 47 H 1.08996 * 117.50080 * 214.97970 * 29 27 11 48 48 H 1.09007 * 117.49829 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.4981 -4.8135 0.9318 13 7 0.1439 -4.6763 -1.1310 14 6 -1.0784 -5.2418 -1.0813 15 8 -1.4167 -5.8698 -0.1003 16 6 -2.0251 -5.0939 -2.2445 17 1 -1.4575 -5.0699 -3.1748 18 6 -2.8190 -3.7934 -2.0954 19 8 -3.7677 -3.6950 -3.1610 20 6 -4.6911 -4.7860 -3.2122 21 6 -3.9161 -6.0965 -3.3728 22 7 -2.9566 -6.2309 -2.2670 23 6 -2.2303 -7.5050 -2.3522 24 6 -3.1646 -8.6518 -1.9608 25 9 -3.7166 -8.3944 -0.7014 26 9 -4.1902 -8.7609 -2.9061 27 6 1.8247 -6.1412 -0.1257 28 6 1.6661 -6.9263 -1.4291 29 6 1.0019 -7.4309 -0.1456 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6848 -3.7145 0.8894 33 1 2.6848 -3.7145 -0.8905 34 1 0.4160 -4.1777 -1.9172 35 1 -3.3437 -3.7949 -1.1399 36 1 -2.1371 -2.9440 -2.1355 37 1 -5.3632 -4.6544 -4.0603 38 1 -5.2703 -4.8163 -2.2893 39 1 -3.3793 -6.0881 -4.3214 40 1 -4.6118 -6.9353 -3.3550 41 1 -1.8786 -7.6552 -3.3728 42 1 -1.3777 -7.4833 -1.6734 43 1 -2.6009 -9.5841 -1.9270 44 1 2.7972 -6.1722 0.3655 45 1 1.0201 -6.5012 -2.1973 46 1 2.5342 -7.4743 -1.7954 47 1 1.4333 -8.3106 0.3319 48 1 -0.0815 -7.3380 -0.0688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269099635.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:04 Heat of formation + Delta-G solvation = -121.244181 kcal Electronic energy + Delta-G solvation = -33269.543031 eV Core-core repulsion = 28611.209179 eV Total energy + Delta-G solvation = -4658.333852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.03775 -46.98266 -40.72235 -39.12142 -37.14785 -35.84228 -34.96674 -33.40756 -31.80438 -30.92210 -30.51537 -28.23495 -26.36786 -24.88626 -24.04503 -22.57188 -22.35209 -21.74242 -21.49548 -20.14384 -19.73220 -18.01967 -17.54733 -17.36237 -16.94997 -16.83394 -16.32394 -16.15708 -15.85963 -15.63044 -15.07527 -14.75236 -14.67477 -14.31422 -14.13512 -13.95478 -13.86223 -13.46265 -13.33044 -13.28161 -12.93970 -12.91081 -12.54758 -12.43191 -12.09640 -11.92114 -11.66192 -11.55173 -11.44671 -11.30862 -11.23145 -10.93006 -10.85299 -10.55210 -10.33011 -10.14280 -9.87281 -9.84493 -9.65946 -9.44860 -8.95752 -8.73578 -8.67461 -7.00805 -5.82041 -3.12060 2.65520 3.01909 3.40285 3.43520 3.46047 3.47824 3.69381 3.86152 3.95753 4.06176 4.31566 4.51486 4.67162 4.71440 4.76427 4.80639 4.87790 4.90769 5.05133 5.07633 5.09940 5.13919 5.21492 5.37261 5.48647 5.50918 5.56265 5.64331 5.67909 5.71599 5.73874 5.92974 5.93937 5.94912 6.12300 6.22569 6.38040 6.41532 6.44792 6.59544 6.62685 6.85065 7.04027 7.64681 7.72523 8.35593 8.39825 9.47874 10.02192 10.37723 11.40173 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.003540 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.459088 B = 7908.305996 C = 9615.472150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.169 3.831 12 H 0.093 0.907 13 N -0.706 5.706 14 C 0.518 3.482 15 O -0.514 6.514 16 C 0.034 3.966 17 H 0.069 0.931 18 C 0.077 3.923 19 O -0.376 6.376 20 C 0.061 3.939 21 C 0.003 3.997 22 N -0.506 5.506 23 C -0.004 4.004 24 C 0.274 3.726 25 F -0.187 7.187 26 F -0.209 7.209 27 C -0.157 4.157 28 C -0.179 4.179 29 C -0.190 4.190 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.034 0.966 33 H 0.026 0.974 34 H 0.405 0.595 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.108 0.892 41 H 0.063 0.937 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 -18.724 -8.363 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.111 0.889 13 N -0.358 5.358 14 C 0.302 3.698 15 O -0.390 6.390 16 C -0.077 4.077 17 H 0.087 0.913 18 C 0.000 4.000 19 O -0.294 6.294 20 C -0.017 4.017 21 C -0.124 4.124 22 N -0.231 5.231 23 C -0.133 4.133 24 C 0.219 3.781 25 F -0.168 7.168 26 F -0.190 7.190 27 C -0.177 4.177 28 C -0.216 4.216 29 C -0.227 4.227 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.240 0.760 35 H 0.089 0.911 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.125 0.875 41 H 0.082 0.918 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.048 -18.867 -7.312 20.854 hybrid contribution 0.835 0.940 -0.954 1.578 sum -4.214 -17.926 -8.266 20.185 Atomic orbital electron populations 1.69647 1.05067 1.25798 1.57232 1.24729 0.95505 0.97663 1.02678 0.86202 0.78672 0.83850 0.77494 1.21710 1.21750 1.20793 1.19188 0.91015 0.84010 1.43361 0.91175 1.42327 1.05945 0.99687 1.89645 1.20905 0.93006 0.85091 0.98983 1.20774 0.90133 0.92823 0.89877 0.88949 1.46046 1.14454 1.54284 1.21038 1.20051 0.81875 0.79564 0.88288 1.90670 1.75430 1.40226 1.32677 1.22347 0.93961 0.94014 0.97422 0.91300 1.22619 0.91413 0.94668 0.91349 1.88051 1.45028 1.44631 1.51705 1.22704 0.91457 0.84814 1.02676 1.23280 0.96474 1.01022 0.91664 1.61884 1.16433 0.99994 1.44839 1.23391 0.97486 0.89731 1.02657 1.21853 0.83707 0.99452 0.73055 1.93042 1.87129 1.95702 1.40944 1.92872 1.63604 1.96916 1.65632 1.22699 1.00837 0.92444 1.01702 1.22887 1.03039 1.04180 0.91534 1.23393 1.01505 0.97093 1.00707 0.93408 0.78035 0.94812 0.95629 0.75990 0.91107 0.86558 0.88225 0.91903 0.93683 0.87456 0.91848 0.86870 0.87179 0.87160 0.89364 0.89397 0.89601 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.53 9.99 -15.06 -0.15 -6.69 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 N -0.73 -17.26 5.43 -59.91 -0.33 -17.59 16 10 C 0.15 2.73 5.80 -4.04 -0.02 2.70 16 11 C 0.17 2.63 2.59 -67.93 -0.18 2.45 16 12 H 0.09 1.67 7.59 -51.93 -0.39 1.28 16 13 N -0.71 -10.19 3.06 -53.80 -0.16 -10.35 16 14 C 0.52 7.61 4.62 -10.98 -0.05 7.56 16 15 O -0.51 -8.92 12.62 5.55 0.07 -8.85 16 16 C 0.03 0.45 2.38 -68.76 -0.16 0.29 16 17 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 18 C 0.08 1.12 6.27 37.20 0.23 1.36 16 19 O -0.38 -5.33 10.83 -35.23 -0.38 -5.71 16 20 C 0.06 0.68 7.01 37.21 0.26 0.94 16 21 C 0.00 0.03 5.33 -3.71 -0.02 0.01 16 22 N -0.51 -6.25 4.05 -227.72 -0.92 -7.17 16 23 C 0.00 -0.04 5.00 -3.82 -0.02 -0.06 16 24 C 0.27 2.67 5.56 37.16 0.21 2.88 16 25 F -0.19 -2.52 17.16 2.25 0.04 -2.49 16 26 F -0.21 -2.14 14.51 2.25 0.03 -2.11 16 27 C -0.16 -2.03 5.70 -90.62 -0.52 -2.55 16 28 C -0.18 -2.00 9.73 -26.70 -0.26 -2.26 16 29 C -0.19 -2.32 9.79 -26.69 -0.26 -2.58 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.39 9.67 7.33 -40.82 -0.30 9.37 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.40 5.66 8.60 -40.82 -0.35 5.31 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.12 1.79 8.14 -51.93 -0.42 1.37 16 37 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.11 1.10 5.43 -51.93 -0.28 0.82 16 41 H 0.06 0.53 8.04 -51.93 -0.42 0.11 16 42 H 0.11 1.29 4.83 -51.93 -0.25 1.04 16 43 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.11 1.33 8.11 -51.93 -0.42 0.91 16 45 H 0.09 0.99 6.66 -51.93 -0.35 0.64 16 46 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.12 1.64 3.92 -51.92 -0.20 1.44 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -31.43 383.11 -8.38 -39.81 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -7.16 Total: 14.51 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.04 Total: 3.72 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.69 Total: -61.49 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.31 Total: -14.56 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.07 Total: -4.59 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.43 -8.38 -39.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269099635.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.434 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds