Wall clock time and date at job start Wed Apr 1 2020 04:24:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86801 * 119.99702 * 2 1
4 4 H 1.48495 * 109.47260 * 270.00249 * 3 2 1
5 5 H 1.48498 * 109.47052 * 30.00691 * 3 2 1
6 6 H 1.48502 * 109.46664 * 150.00255 * 3 2 1
7 7 C 1.38804 * 119.99954 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99785 * 179.97438 * 7 2 1
9 9 N 1.36937 * 120.00450 * 359.97438 * 7 2 1
10 10 C 1.46502 * 120.00267 * 180.02562 * 9 7 2
11 11 C 1.53004 * 109.46874 * 179.97438 * 10 9 7
12 12 H 1.09001 * 109.46966 * 294.99398 * 11 10 9
13 13 N 1.46496 * 109.47071 * 55.00036 * 11 10 9
14 14 C 1.34777 * 119.99687 * 204.72514 * 13 11 10
15 15 O 1.21287 * 120.00029 * 359.97438 * 14 13 11
16 16 C 1.50705 * 120.00213 * 179.97438 * 14 13 11
17 17 H 1.09003 * 109.50286 * 33.60465 * 16 14 13
18 18 C 1.53089 * 109.50867 * 273.47375 * 16 14 13
19 19 O 1.43014 * 109.26150 * 183.21527 * 18 16 14
20 20 C 1.43016 * 113.73513 * 58.66760 * 19 18 16
21 21 C 1.53100 * 109.25945 * 301.32777 * 20 19 18
22 22 N 1.47011 * 109.50509 * 153.68523 * 16 14 13
23 23 C 1.46898 * 111.00347 * 302.32982 * 22 16 14
24 24 C 1.53009 * 109.47006 * 163.34366 * 23 22 16
25 25 F 1.39897 * 109.46944 * 305.63762 * 24 23 22
26 26 F 1.39906 * 109.46878 * 65.63668 * 24 23 22
27 27 C 1.53002 * 109.46739 * 174.99817 * 11 10 9
28 28 C 1.52991 * 117.49758 * 248.74517 * 27 11 10
29 29 C 1.52999 * 117.49704 * 180.08299 * 27 11 10
30 30 H 0.97000 * 120.00255 * 359.97438 * 1 2 3
31 31 H 0.97002 * 119.99533 * 0.02562 * 9 7 2
32 32 H 1.08997 * 109.47168 * 59.99633 * 10 9 7
33 33 H 1.09000 * 109.46854 * 299.99939 * 10 9 7
34 34 H 0.96996 * 120.00544 * 24.99589 * 13 11 10
35 35 H 1.09006 * 109.50229 * 303.15094 * 18 16 14
36 36 H 1.09003 * 109.50781 * 63.27403 * 18 16 14
37 37 H 1.09008 * 109.50210 * 181.40083 * 20 19 18
38 38 H 1.09002 * 109.50936 * 61.26888 * 20 19 18
39 39 H 1.08997 * 109.50995 * 296.92149 * 21 20 19
40 40 H 1.08999 * 109.50713 * 176.78360 * 21 20 19
41 41 H 1.08996 * 109.47267 * 283.33985 * 23 22 16
42 42 H 1.09000 * 109.47196 * 43.34818 * 23 22 16
43 43 H 1.09003 * 109.46888 * 185.63408 * 24 23 22
44 44 H 1.08998 * 115.54860 * 34.41922 * 27 11 10
45 45 H 1.09000 * 117.50051 * 0.02562 * 28 27 11
46 46 H 1.09003 * 117.50078 * 145.02708 * 28 27 11
47 47 H 1.08996 * 117.50080 * 214.97970 * 29 27 11
48 48 H 1.09007 * 117.49829 * 359.97438 * 29 27 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 2.4975 2.0465 -1.4000
5 1 1.4476 2.6526 0.7002
6 1 3.5477 1.4402 0.7000
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2021 -0.0010
9 7 1.3256 -2.3880 -0.0005
10 6 2.0581 -3.6568 -0.0005
11 6 1.0638 -4.8197 0.0001
12 1 0.4981 -4.8135 0.9318
13 7 0.1439 -4.6763 -1.1310
14 6 -1.0784 -5.2418 -1.0813
15 8 -1.4167 -5.8698 -0.1003
16 6 -2.0251 -5.0939 -2.2445
17 1 -1.4575 -5.0699 -3.1748
18 6 -2.8190 -3.7934 -2.0954
19 8 -3.7677 -3.6950 -3.1610
20 6 -4.6911 -4.7860 -3.2122
21 6 -3.9161 -6.0965 -3.3728
22 7 -2.9566 -6.2309 -2.2670
23 6 -2.2303 -7.5050 -2.3522
24 6 -3.1646 -8.6518 -1.9608
25 9 -3.7166 -8.3944 -0.7014
26 9 -4.1902 -8.7609 -2.9061
27 6 1.8247 -6.1412 -0.1257
28 6 1.6661 -6.9263 -1.4291
29 6 1.0019 -7.4309 -0.1456
30 1 -0.4850 0.8400 0.0004
31 1 0.3556 -2.3880 -0.0005
32 1 2.6848 -3.7145 0.8894
33 1 2.6848 -3.7145 -0.8905
34 1 0.4160 -4.1777 -1.9172
35 1 -3.3437 -3.7949 -1.1399
36 1 -2.1371 -2.9440 -2.1355
37 1 -5.3632 -4.6544 -4.0603
38 1 -5.2703 -4.8163 -2.2893
39 1 -3.3793 -6.0881 -4.3214
40 1 -4.6118 -6.9353 -3.3550
41 1 -1.8786 -7.6552 -3.3728
42 1 -1.3777 -7.4833 -1.6734
43 1 -2.6009 -9.5841 -1.9270
44 1 2.7972 -6.1722 0.3655
45 1 1.0201 -6.5012 -2.1973
46 1 2.5342 -7.4743 -1.7954
47 1 1.4333 -8.3106 0.3319
48 1 -0.0815 -7.3380 -0.0688
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001269099635.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:24:04
Heat of formation + Delta-G solvation = -143.449147 kcal
Electronic energy + Delta-G solvation = -33270.505910 eV
Core-core repulsion = 28611.209179 eV
Total energy + Delta-G solvation = -4659.296732 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.181 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-49.84715 -47.83547 -41.84524 -40.20394 -38.31243 -36.82778 -36.53468 -34.85096
-33.26621 -32.33657 -31.38088 -29.76336 -27.32663 -26.19185 -25.63055 -23.47024
-23.40301 -23.01631 -22.63548 -21.21086 -20.90151 -19.34537 -18.75868 -18.41061
-18.03765 -17.85657 -17.38876 -17.20444 -16.94594 -16.78255 -16.48994 -16.00765
-15.73577 -15.56614 -15.22986 -15.04956 -14.99477 -14.89318 -14.78583 -14.35388
-14.18936 -13.94065 -13.69164 -13.41869 -13.27258 -13.09595 -12.84275 -12.82491
-12.67747 -12.59332 -12.52529 -12.30505 -12.12975 -12.07316 -11.82243 -11.53368
-11.27318 -10.97844 -10.92051 -10.79865 -10.58535 -9.96175 -9.56263 -8.99149
-7.92613 -5.21712 1.47884 1.49746 1.50548 1.58769 1.93971 2.46171
2.56976 2.82696 2.95559 2.97598 3.35323 3.42099 3.53264 3.58966
3.68656 3.74455 3.82353 3.91168 4.00244 4.03817 4.10305 4.19706
4.19976 4.22420 4.43288 4.43604 4.48432 4.52619 4.61797 4.63337
4.66570 4.80177 4.84808 4.87592 4.90420 5.08589 5.15673 5.26991
5.40619 5.50734 5.52974 5.58813 5.74682 5.99313 6.27946 6.53945
7.21741 7.36079 8.08963 8.32883 9.29998
Molecular weight = 347.18amu
Principal moments of inertia in cm(-1)
A = 0.012624 B = 0.003540 C = 0.002911
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2217.459088 B = 7908.305996 C = 9615.472150
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.965 5.965
2 C -0.069 4.069
3 Si 0.969 3.031
4 H -0.286 1.286
5 H -0.300 1.300
6 H -0.271 1.271
7 C -0.244 4.244
8 H 0.078 0.922
9 N -0.742 5.742
10 C 0.150 3.850
11 C 0.181 3.819
12 H 0.061 0.939
13 N -0.702 5.702
14 C 0.522 3.478
15 O -0.542 6.542
16 C 0.046 3.954
17 H 0.088 0.912
18 C 0.082 3.918
19 O -0.388 6.388
20 C 0.054 3.946
21 C 0.009 3.991
22 N -0.527 5.527
23 C -0.004 4.004
24 C 0.268 3.732
25 F -0.213 7.213
26 F -0.211 7.211
27 C -0.170 4.170
28 C -0.158 4.158
29 C -0.188 4.188
30 H 0.250 0.750
31 H 0.375 0.625
32 H 0.035 0.965
33 H 0.040 0.960
34 H 0.408 0.592
35 H 0.047 0.953
36 H 0.101 0.899
37 H 0.128 0.872
38 H 0.052 0.948
39 H 0.058 0.942
40 H 0.115 0.885
41 H 0.090 0.910
42 H 0.103 0.897
43 H 0.153 0.847
44 H 0.122 0.878
45 H 0.088 0.912
46 H 0.110 0.890
47 H 0.102 0.898
48 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.266 -20.416 -10.050 22.989
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.615 5.615
2 C -0.262 4.262
3 Si 0.799 3.201
4 H -0.213 1.213
5 H -0.227 1.227
6 H -0.196 1.196
7 C -0.376 4.376
8 H 0.095 0.905
9 N -0.385 5.385
10 C 0.024 3.976
11 C 0.076 3.924
12 H 0.079 0.921
13 N -0.353 5.353
14 C 0.307 3.693
15 O -0.419 6.419
16 C -0.066 4.066
17 H 0.106 0.894
18 C 0.004 3.996
19 O -0.307 6.307
20 C -0.022 4.022
21 C -0.118 4.118
22 N -0.253 5.253
23 C -0.133 4.133
24 C 0.214 3.786
25 F -0.194 7.194
26 F -0.193 7.193
27 C -0.190 4.190
28 C -0.195 4.195
29 C -0.225 4.225
30 H 0.058 0.942
31 H 0.207 0.793
32 H 0.053 0.947
33 H 0.058 0.942
34 H 0.244 0.756
35 H 0.066 0.934
36 H 0.119 0.881
37 H 0.145 0.855
38 H 0.071 0.929
39 H 0.077 0.923
40 H 0.132 0.868
41 H 0.108 0.892
42 H 0.121 0.879
43 H 0.170 0.830
44 H 0.140 0.860
45 H 0.107 0.893
46 H 0.128 0.872
47 H 0.120 0.880
48 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -3.646 -20.593 -9.014 22.773
hybrid contribution 0.396 1.400 -0.414 1.513
sum -3.250 -19.193 -9.428 21.629
Atomic orbital electron populations
1.69805 1.06496 1.25921 1.59284 1.25478 0.96252 1.00817 1.03654
0.85210 0.77677 0.79860 0.77392 1.21316 1.22730 1.19595 1.19587
0.91522 0.85118 1.41323 0.90456 1.42496 1.05652 1.00849 1.89524
1.21027 0.93398 0.83898 0.99322 1.20472 0.89474 0.93448 0.89022
0.92114 1.45976 1.14446 1.54185 1.20716 1.20294 0.81804 0.78819
0.88371 1.90664 1.75851 1.41492 1.33877 1.22168 0.93568 0.93672
0.97226 0.89422 1.22393 0.91370 0.95216 0.90605 1.88029 1.45388
1.46122 1.51133 1.22945 0.91307 0.84568 1.03406 1.23274 0.96254
1.00632 0.91678 1.61855 1.16871 1.00479 1.46078 1.23455 0.97140
0.88803 1.03869 1.22298 0.83536 1.00998 0.71731 1.92991 1.87607
1.95981 1.42863 1.92860 1.63883 1.96950 1.65571 1.22602 1.01122
0.91148 1.04091 1.22955 1.03296 1.02651 0.90628 1.23330 1.00382
0.96975 1.01789 0.94159 0.79298 0.94729 0.94170 0.75587 0.93440
0.88068 0.85467 0.92947 0.92337 0.86756 0.89231 0.87904 0.83046
0.86016 0.89322 0.87203 0.87989 0.88483
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -57.56 13.06 21.65 0.28 -57.28 16
2 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16
3 Si 0.97 45.10 29.55 68.60 2.03 47.13 16
4 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16
5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16
6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16
7 C -0.24 -12.98 9.99 84.03 0.84 -12.14 16
8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16
9 N -0.74 -35.34 5.43 -343.45 -1.87 -37.21 16
10 C 0.15 5.45 5.80 86.38 0.50 5.95 16
11 C 0.18 5.63 2.59 44.99 0.12 5.75 16
12 H 0.06 2.29 7.59 -2.39 -0.02 2.27 16
13 N -0.70 -20.19 3.06 -442.52 -1.36 -21.54 16
14 C 0.52 15.46 4.62 87.66 0.41 15.87 16
15 O -0.54 -19.22 12.62 -3.05 -0.04 -19.26 16
16 C 0.05 1.18 2.38 44.18 0.11 1.28 16
17 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16
18 C 0.08 2.48 6.27 72.01 0.45 2.93 16
19 O -0.39 -11.00 10.83 -148.98 -1.61 -12.61 16
20 C 0.05 1.18 7.01 72.02 0.50 1.68 16
21 C 0.01 0.17 5.33 86.31 0.46 0.63 16
22 N -0.53 -12.51 4.05 -874.38 -3.54 -16.05 16
23 C 0.00 -0.08 5.00 86.31 0.43 0.35 16
24 C 0.27 4.70 5.56 71.99 0.40 5.10 16
25 F -0.21 -5.64 17.16 44.97 0.77 -4.87 16
26 F -0.21 -3.87 14.51 44.97 0.65 -3.22 16
27 C -0.17 -4.12 5.70 -10.80 -0.06 -4.18 16
28 C -0.16 -3.08 9.73 30.62 0.30 -2.78 16
29 C -0.19 -4.23 9.79 30.62 0.30 -3.93 16
30 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16
31 H 0.37 19.35 7.33 -92.71 -0.68 18.67 16
32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16
33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16
34 H 0.41 11.24 8.60 -92.71 -0.80 10.44 16
35 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16
36 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16
37 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16
38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16
39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
40 H 0.11 2.13 5.43 -2.39 -0.01 2.12 16
41 H 0.09 1.20 8.04 -2.39 -0.02 1.18 16
42 H 0.10 2.18 4.83 -2.39 -0.01 2.17 16
43 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16
44 H 0.12 2.67 8.11 -2.39 -0.02 2.65 16
45 H 0.09 1.74 6.66 -2.39 -0.02 1.72 16
46 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16
47 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16
48 H 0.10 2.67 3.92 -2.38 -0.01 2.66 16
Total: -1.00 -68.76 383.11 0.07 -68.69
By element:
Atomic # 1 Polarization: 43.55 SS G_CDS: -0.47 Total: 43.08 kcal
Atomic # 6 Polarization: 7.91 SS G_CDS: 5.22 Total: 13.13 kcal
Atomic # 7 Polarization: -125.60 SS G_CDS: -6.48 Total: -132.08 kcal
Atomic # 8 Polarization: -30.22 SS G_CDS: -1.65 Total: -31.87 kcal
Atomic # 9 Polarization: -9.50 SS G_CDS: 1.42 Total: -8.08 kcal
Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal
Total: -68.76 0.07 -68.69 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001269099635.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.758 kcal
(2) G-P(sol) polarization free energy of solvation -68.761 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.519 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.691 kcal
(6) G-S(sol) free energy of system = (1) + (5) -143.449 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds