Wall clock time and date at job start Wed Apr 1 2020 04:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99702 * 2 1 4 4 H 1.48495 * 109.47260 * 270.00249 * 3 2 1 5 5 H 1.48498 * 109.47052 * 30.00691 * 3 2 1 6 6 H 1.48502 * 109.46664 * 150.00255 * 3 2 1 7 7 C 1.38804 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00450 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00267 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46874 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46966 * 294.99398 * 11 10 9 13 13 N 1.46496 * 109.47071 * 55.00036 * 11 10 9 14 14 C 1.34777 * 119.99687 * 204.72514 * 13 11 10 15 15 O 1.21287 * 120.00029 * 359.97438 * 14 13 11 16 16 C 1.50705 * 120.00213 * 179.97438 * 14 13 11 17 17 H 1.09003 * 109.50286 * 33.60465 * 16 14 13 18 18 C 1.53089 * 109.50867 * 273.47375 * 16 14 13 19 19 O 1.43014 * 109.26150 * 183.21527 * 18 16 14 20 20 C 1.43016 * 113.73513 * 58.66760 * 19 18 16 21 21 C 1.53100 * 109.25945 * 301.32777 * 20 19 18 22 22 N 1.47011 * 109.50509 * 153.68523 * 16 14 13 23 23 C 1.46898 * 111.00347 * 302.32982 * 22 16 14 24 24 C 1.53009 * 109.47006 * 163.34366 * 23 22 16 25 25 F 1.39897 * 109.46944 * 305.63762 * 24 23 22 26 26 F 1.39906 * 109.46878 * 65.63668 * 24 23 22 27 27 C 1.53002 * 109.46739 * 174.99817 * 11 10 9 28 28 C 1.52991 * 117.49758 * 248.74517 * 27 11 10 29 29 C 1.52999 * 117.49704 * 180.08299 * 27 11 10 30 30 H 0.97000 * 120.00255 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99533 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47168 * 59.99633 * 10 9 7 33 33 H 1.09000 * 109.46854 * 299.99939 * 10 9 7 34 34 H 0.96996 * 120.00544 * 24.99589 * 13 11 10 35 35 H 1.09006 * 109.50229 * 303.15094 * 18 16 14 36 36 H 1.09003 * 109.50781 * 63.27403 * 18 16 14 37 37 H 1.09008 * 109.50210 * 181.40083 * 20 19 18 38 38 H 1.09002 * 109.50936 * 61.26888 * 20 19 18 39 39 H 1.08997 * 109.50995 * 296.92149 * 21 20 19 40 40 H 1.08999 * 109.50713 * 176.78360 * 21 20 19 41 41 H 1.08996 * 109.47267 * 283.33985 * 23 22 16 42 42 H 1.09000 * 109.47196 * 43.34818 * 23 22 16 43 43 H 1.09003 * 109.46888 * 185.63408 * 24 23 22 44 44 H 1.08998 * 115.54860 * 34.41922 * 27 11 10 45 45 H 1.09000 * 117.50051 * 0.02562 * 28 27 11 46 46 H 1.09003 * 117.50078 * 145.02708 * 28 27 11 47 47 H 1.08996 * 117.50080 * 214.97970 * 29 27 11 48 48 H 1.09007 * 117.49829 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.4981 -4.8135 0.9318 13 7 0.1439 -4.6763 -1.1310 14 6 -1.0784 -5.2418 -1.0813 15 8 -1.4167 -5.8698 -0.1003 16 6 -2.0251 -5.0939 -2.2445 17 1 -1.4575 -5.0699 -3.1748 18 6 -2.8190 -3.7934 -2.0954 19 8 -3.7677 -3.6950 -3.1610 20 6 -4.6911 -4.7860 -3.2122 21 6 -3.9161 -6.0965 -3.3728 22 7 -2.9566 -6.2309 -2.2670 23 6 -2.2303 -7.5050 -2.3522 24 6 -3.1646 -8.6518 -1.9608 25 9 -3.7166 -8.3944 -0.7014 26 9 -4.1902 -8.7609 -2.9061 27 6 1.8247 -6.1412 -0.1257 28 6 1.6661 -6.9263 -1.4291 29 6 1.0019 -7.4309 -0.1456 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6848 -3.7145 0.8894 33 1 2.6848 -3.7145 -0.8905 34 1 0.4160 -4.1777 -1.9172 35 1 -3.3437 -3.7949 -1.1399 36 1 -2.1371 -2.9440 -2.1355 37 1 -5.3632 -4.6544 -4.0603 38 1 -5.2703 -4.8163 -2.2893 39 1 -3.3793 -6.0881 -4.3214 40 1 -4.6118 -6.9353 -3.3550 41 1 -1.8786 -7.6552 -3.3728 42 1 -1.3777 -7.4833 -1.6734 43 1 -2.6009 -9.5841 -1.9270 44 1 2.7972 -6.1722 0.3655 45 1 1.0201 -6.5012 -2.1973 46 1 2.5342 -7.4743 -1.7954 47 1 1.4333 -8.3106 0.3319 48 1 -0.0815 -7.3380 -0.0688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269099635.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:04 Heat of formation + Delta-G solvation = -143.449147 kcal Electronic energy + Delta-G solvation = -33270.505910 eV Core-core repulsion = 28611.209179 eV Total energy + Delta-G solvation = -4659.296732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.84715 -47.83547 -41.84524 -40.20394 -38.31243 -36.82778 -36.53468 -34.85096 -33.26621 -32.33657 -31.38088 -29.76336 -27.32663 -26.19185 -25.63055 -23.47024 -23.40301 -23.01631 -22.63548 -21.21086 -20.90151 -19.34537 -18.75868 -18.41061 -18.03765 -17.85657 -17.38876 -17.20444 -16.94594 -16.78255 -16.48994 -16.00765 -15.73577 -15.56614 -15.22986 -15.04956 -14.99477 -14.89318 -14.78583 -14.35388 -14.18936 -13.94065 -13.69164 -13.41869 -13.27258 -13.09595 -12.84275 -12.82491 -12.67747 -12.59332 -12.52529 -12.30505 -12.12975 -12.07316 -11.82243 -11.53368 -11.27318 -10.97844 -10.92051 -10.79865 -10.58535 -9.96175 -9.56263 -8.99149 -7.92613 -5.21712 1.47884 1.49746 1.50548 1.58769 1.93971 2.46171 2.56976 2.82696 2.95559 2.97598 3.35323 3.42099 3.53264 3.58966 3.68656 3.74455 3.82353 3.91168 4.00244 4.03817 4.10305 4.19706 4.19976 4.22420 4.43288 4.43604 4.48432 4.52619 4.61797 4.63337 4.66570 4.80177 4.84808 4.87592 4.90420 5.08589 5.15673 5.26991 5.40619 5.50734 5.52974 5.58813 5.74682 5.99313 6.27946 6.53945 7.21741 7.36079 8.08963 8.32883 9.29998 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.003540 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.459088 B = 7908.305996 C = 9615.472150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.181 3.819 12 H 0.061 0.939 13 N -0.702 5.702 14 C 0.522 3.478 15 O -0.542 6.542 16 C 0.046 3.954 17 H 0.088 0.912 18 C 0.082 3.918 19 O -0.388 6.388 20 C 0.054 3.946 21 C 0.009 3.991 22 N -0.527 5.527 23 C -0.004 4.004 24 C 0.268 3.732 25 F -0.213 7.213 26 F -0.211 7.211 27 C -0.170 4.170 28 C -0.158 4.158 29 C -0.188 4.188 30 H 0.250 0.750 31 H 0.375 0.625 32 H 0.035 0.965 33 H 0.040 0.960 34 H 0.408 0.592 35 H 0.047 0.953 36 H 0.101 0.899 37 H 0.128 0.872 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.153 0.847 44 H 0.122 0.878 45 H 0.088 0.912 46 H 0.110 0.890 47 H 0.102 0.898 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.266 -20.416 -10.050 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.196 1.196 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.385 5.385 10 C 0.024 3.976 11 C 0.076 3.924 12 H 0.079 0.921 13 N -0.353 5.353 14 C 0.307 3.693 15 O -0.419 6.419 16 C -0.066 4.066 17 H 0.106 0.894 18 C 0.004 3.996 19 O -0.307 6.307 20 C -0.022 4.022 21 C -0.118 4.118 22 N -0.253 5.253 23 C -0.133 4.133 24 C 0.214 3.786 25 F -0.194 7.194 26 F -0.193 7.193 27 C -0.190 4.190 28 C -0.195 4.195 29 C -0.225 4.225 30 H 0.058 0.942 31 H 0.207 0.793 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.244 0.756 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.145 0.855 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.170 0.830 44 H 0.140 0.860 45 H 0.107 0.893 46 H 0.128 0.872 47 H 0.120 0.880 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.646 -20.593 -9.014 22.773 hybrid contribution 0.396 1.400 -0.414 1.513 sum -3.250 -19.193 -9.428 21.629 Atomic orbital electron populations 1.69805 1.06496 1.25921 1.59284 1.25478 0.96252 1.00817 1.03654 0.85210 0.77677 0.79860 0.77392 1.21316 1.22730 1.19595 1.19587 0.91522 0.85118 1.41323 0.90456 1.42496 1.05652 1.00849 1.89524 1.21027 0.93398 0.83898 0.99322 1.20472 0.89474 0.93448 0.89022 0.92114 1.45976 1.14446 1.54185 1.20716 1.20294 0.81804 0.78819 0.88371 1.90664 1.75851 1.41492 1.33877 1.22168 0.93568 0.93672 0.97226 0.89422 1.22393 0.91370 0.95216 0.90605 1.88029 1.45388 1.46122 1.51133 1.22945 0.91307 0.84568 1.03406 1.23274 0.96254 1.00632 0.91678 1.61855 1.16871 1.00479 1.46078 1.23455 0.97140 0.88803 1.03869 1.22298 0.83536 1.00998 0.71731 1.92991 1.87607 1.95981 1.42863 1.92860 1.63883 1.96950 1.65571 1.22602 1.01122 0.91148 1.04091 1.22955 1.03296 1.02651 0.90628 1.23330 1.00382 0.96975 1.01789 0.94159 0.79298 0.94729 0.94170 0.75587 0.93440 0.88068 0.85467 0.92947 0.92337 0.86756 0.89231 0.87904 0.83046 0.86016 0.89322 0.87203 0.87989 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.56 13.06 21.65 0.28 -57.28 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 3 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.24 -12.98 9.99 84.03 0.84 -12.14 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -35.34 5.43 -343.45 -1.87 -37.21 16 10 C 0.15 5.45 5.80 86.38 0.50 5.95 16 11 C 0.18 5.63 2.59 44.99 0.12 5.75 16 12 H 0.06 2.29 7.59 -2.39 -0.02 2.27 16 13 N -0.70 -20.19 3.06 -442.52 -1.36 -21.54 16 14 C 0.52 15.46 4.62 87.66 0.41 15.87 16 15 O -0.54 -19.22 12.62 -3.05 -0.04 -19.26 16 16 C 0.05 1.18 2.38 44.18 0.11 1.28 16 17 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 18 C 0.08 2.48 6.27 72.01 0.45 2.93 16 19 O -0.39 -11.00 10.83 -148.98 -1.61 -12.61 16 20 C 0.05 1.18 7.01 72.02 0.50 1.68 16 21 C 0.01 0.17 5.33 86.31 0.46 0.63 16 22 N -0.53 -12.51 4.05 -874.38 -3.54 -16.05 16 23 C 0.00 -0.08 5.00 86.31 0.43 0.35 16 24 C 0.27 4.70 5.56 71.99 0.40 5.10 16 25 F -0.21 -5.64 17.16 44.97 0.77 -4.87 16 26 F -0.21 -3.87 14.51 44.97 0.65 -3.22 16 27 C -0.17 -4.12 5.70 -10.80 -0.06 -4.18 16 28 C -0.16 -3.08 9.73 30.62 0.30 -2.78 16 29 C -0.19 -4.23 9.79 30.62 0.30 -3.93 16 30 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.37 19.35 7.33 -92.71 -0.68 18.67 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.41 11.24 8.60 -92.71 -0.80 10.44 16 35 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.11 2.13 5.43 -2.39 -0.01 2.12 16 41 H 0.09 1.20 8.04 -2.39 -0.02 1.18 16 42 H 0.10 2.18 4.83 -2.39 -0.01 2.17 16 43 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.12 2.67 8.11 -2.39 -0.02 2.65 16 45 H 0.09 1.74 6.66 -2.39 -0.02 1.72 16 46 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.10 2.67 3.92 -2.38 -0.01 2.66 16 Total: -1.00 -68.76 383.11 0.07 -68.69 By element: Atomic # 1 Polarization: 43.55 SS G_CDS: -0.47 Total: 43.08 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.22 Total: 13.13 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -6.48 Total: -132.08 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -1.65 Total: -31.87 kcal Atomic # 9 Polarization: -9.50 SS G_CDS: 1.42 Total: -8.08 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -68.76 0.07 -68.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269099635.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.758 kcal (2) G-P(sol) polarization free energy of solvation -68.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds