Wall clock time and date at job start Wed Apr 1 2020 04:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00184 * 2 1 4 4 H 1.48504 * 109.47097 * 269.99905 * 3 2 1 5 5 H 1.48500 * 109.46817 * 29.99651 * 3 2 1 6 6 H 1.48495 * 109.47256 * 149.99736 * 3 2 1 7 7 C 1.38812 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99930 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99761 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47157 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47267 * 295.00206 * 11 10 9 13 13 N 1.46501 * 109.46880 * 54.99906 * 11 10 9 14 14 C 1.34776 * 120.00098 * 204.99826 * 13 11 10 15 15 O 1.21285 * 119.99742 * 0.02562 * 14 13 11 16 16 C 1.50701 * 120.00044 * 180.02562 * 14 13 11 17 17 H 1.09005 * 109.54274 * 326.04794 * 16 14 13 18 18 C 1.53096 * 109.50842 * 86.16092 * 16 14 13 19 19 O 1.43011 * 109.25892 * 176.78220 * 18 16 14 20 20 C 1.43016 * 113.73758 * 301.32695 * 19 18 16 21 21 C 1.53095 * 109.25652 * 58.67626 * 20 19 18 22 22 N 1.47019 * 109.50340 * 205.94537 * 16 14 13 23 23 C 1.46898 * 111.00396 * 57.67454 * 22 16 14 24 24 C 1.52999 * 109.47037 * 199.42050 * 23 22 16 25 25 F 1.39895 * 109.46947 * 294.18971 * 24 23 22 26 26 F 1.39897 * 109.47103 * 54.18788 * 24 23 22 27 27 C 1.53001 * 109.47167 * 174.99693 * 11 10 9 28 28 C 1.52994 * 117.49969 * 248.62325 * 27 11 10 29 29 C 1.52994 * 117.49586 * 179.97438 * 27 11 10 30 30 H 0.96998 * 119.99480 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00311 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47235 * 60.00331 * 10 9 7 33 33 H 1.09003 * 109.47289 * 300.00009 * 10 9 7 34 34 H 0.97006 * 119.99846 * 25.00390 * 13 11 10 35 35 H 1.09002 * 109.50663 * 56.84561 * 18 16 14 36 36 H 1.09004 * 109.53974 * 296.74005 * 18 16 14 37 37 H 1.08991 * 109.51191 * 298.73592 * 20 19 18 38 38 H 1.09001 * 109.50421 * 178.60457 * 20 19 18 39 39 H 1.08999 * 109.50847 * 183.21219 * 21 20 19 40 40 H 1.09000 * 109.51067 * 63.08034 * 21 20 19 41 41 H 1.08996 * 109.46948 * 79.41500 * 23 22 16 42 42 H 1.09001 * 109.46563 * 319.41552 * 23 22 16 43 43 H 1.09000 * 109.46897 * 174.19023 * 24 23 22 44 44 H 1.08999 * 115.54696 * 34.33342 * 27 11 10 45 45 H 1.09001 * 117.50193 * 359.97438 * 28 27 11 46 46 H 1.09001 * 117.50081 * 145.02815 * 28 27 11 47 47 H 1.09003 * 117.50079 * 214.98204 * 29 27 11 48 48 H 1.09001 * 117.50088 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6567 0.0027 11 6 1.0637 -4.8197 0.0031 12 1 0.4971 -4.8130 0.9342 13 7 0.1447 -4.6768 -1.1288 14 6 -1.0798 -5.2376 -1.0776 15 8 -1.4210 -5.8602 -0.0943 16 6 -2.0250 -5.0910 -2.2422 17 1 -1.8788 -4.1174 -2.7101 18 6 -1.7508 -6.1963 -3.2654 19 8 -2.6988 -6.0979 -4.3316 20 6 -4.0593 -6.2043 -3.9039 21 6 -4.3569 -5.0991 -2.8872 22 7 -3.4114 -5.2038 -1.7663 23 6 -3.6991 -4.1943 -0.7387 24 6 -4.9291 -4.6209 0.0650 25 9 -6.0549 -4.6118 -0.7654 26 9 -4.7322 -5.9108 0.5695 27 6 1.8246 -6.1413 -0.1215 28 6 1.6648 -6.9284 -1.4236 29 6 1.0019 -7.4311 -0.1390 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0016 32 1 2.6846 -3.7137 0.8928 33 1 2.6847 -3.7153 -0.8872 34 1 0.4175 -4.1786 -1.9151 35 1 -1.8445 -7.1696 -2.7837 36 1 -0.7423 -6.0828 -3.6633 37 1 -4.2202 -7.1778 -3.4408 38 1 -4.7206 -6.0957 -4.7635 39 1 -5.3756 -5.2108 -2.5157 40 1 -4.2481 -4.1256 -3.3654 41 1 -3.8926 -3.2341 -1.2169 42 1 -2.8428 -4.1016 -0.0707 43 1 -5.0817 -3.9268 0.8916 44 1 2.7974 -6.1716 0.3692 45 1 1.0172 -6.5050 -2.1914 46 1 2.5325 -7.4769 -1.7900 47 1 1.4339 -8.3101 0.3395 48 1 -0.0814 -7.3381 -0.0621 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269099638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:13 Heat of formation + Delta-G solvation = -123.537886 kcal Electronic energy + Delta-G solvation = -33241.058517 eV Core-core repulsion = 28582.625203 eV Total energy + Delta-G solvation = -4658.433315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.85001 -46.80233 -40.70356 -39.14196 -37.18398 -35.76434 -34.96508 -33.39820 -31.88678 -30.95780 -30.41177 -28.21638 -26.34669 -24.95949 -24.07726 -22.43263 -22.26343 -21.75999 -21.47884 -20.06741 -19.71288 -17.89319 -17.45461 -17.26261 -16.95147 -16.79871 -16.46489 -16.09516 -15.78417 -15.57268 -15.08575 -14.79215 -14.62133 -14.25952 -14.11978 -13.92523 -13.75146 -13.55517 -13.30192 -13.16591 -12.99426 -12.84752 -12.42468 -12.31873 -12.07234 -11.85254 -11.65119 -11.60709 -11.40579 -11.25862 -11.16209 -10.95491 -10.88661 -10.63114 -10.27709 -10.15303 -9.94201 -9.86856 -9.62970 -9.44963 -8.99655 -8.73415 -8.59475 -7.05127 -5.87742 -3.16834 2.66524 3.07873 3.36584 3.42533 3.43252 3.43885 3.74410 3.90757 4.03340 4.27187 4.48241 4.51941 4.67147 4.75200 4.81558 4.86584 4.91653 4.95265 5.09471 5.11681 5.15399 5.17260 5.40159 5.44980 5.46187 5.50370 5.52446 5.57140 5.68018 5.70393 5.75305 5.81912 5.94364 5.98548 6.17665 6.26356 6.41547 6.48067 6.52264 6.61761 6.66602 6.85325 6.88700 7.60558 7.73612 8.30578 8.41129 9.42907 9.97557 10.33078 11.34856 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009059 B = 0.003932 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.986260 B = 7119.629035 C = 8526.450077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.147 3.853 11 C 0.170 3.830 12 H 0.091 0.909 13 N -0.707 5.707 14 C 0.518 3.482 15 O -0.514 6.514 16 C 0.030 3.970 17 H 0.076 0.924 18 C 0.080 3.920 19 O -0.379 6.379 20 C 0.063 3.937 21 C 0.003 3.997 22 N -0.506 5.506 23 C -0.001 4.001 24 C 0.275 3.725 25 F -0.211 7.211 26 F -0.189 7.189 27 C -0.161 4.161 28 C -0.177 4.177 29 C -0.186 4.186 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.035 0.965 33 H 0.027 0.973 34 H 0.405 0.595 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.061 -13.411 -5.784 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.019 3.981 11 C 0.065 3.935 12 H 0.109 0.891 13 N -0.359 5.359 14 C 0.303 3.697 15 O -0.389 6.389 16 C -0.082 4.082 17 H 0.093 0.907 18 C 0.002 3.998 19 O -0.297 6.297 20 C -0.014 4.014 21 C -0.125 4.125 22 N -0.231 5.231 23 C -0.130 4.130 24 C 0.220 3.780 25 F -0.192 7.192 26 F -0.171 7.171 27 C -0.181 4.181 28 C -0.215 4.215 29 C -0.222 4.222 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.240 0.760 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.191 -14.198 -5.042 16.695 hybrid contribution 0.361 2.048 -0.426 2.123 sum -6.830 -12.150 -5.468 14.972 Atomic orbital electron populations 1.69649 1.05143 1.25697 1.57656 1.24723 0.95514 0.97700 1.02776 0.86186 0.78712 0.83730 0.77520 1.21707 1.21774 1.20716 1.19218 0.91077 0.84016 1.42932 0.91097 1.42321 1.05874 0.99756 1.89631 1.20924 0.93065 0.85027 0.99045 1.20757 0.90119 0.92884 0.89720 0.89110 1.46056 1.14471 1.54426 1.20927 1.20033 0.82107 0.79418 0.88186 1.90676 1.75446 1.40029 1.32769 1.22350 0.89400 1.01270 0.95168 0.90666 1.22527 0.93272 0.96971 0.86995 1.88011 1.15562 1.93994 1.32130 1.22709 0.83149 0.98041 0.97477 1.23240 0.98415 0.99066 0.91757 1.61907 1.01084 1.48798 1.11345 1.23341 0.99225 0.94208 0.96189 1.21869 0.82806 0.82850 0.90446 1.92869 1.55245 1.96821 1.74296 1.93018 1.95136 1.41278 1.87639 1.22689 1.00828 0.92469 1.02071 1.22883 1.02976 1.04030 0.91571 1.23340 1.01596 0.96722 1.00593 0.93530 0.78181 0.94752 0.95522 0.76015 0.91349 0.87894 0.91948 0.88127 0.87530 0.93393 0.91150 0.86827 0.86960 0.87285 0.89211 0.89467 0.89755 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.78 13.06 55.49 0.72 -26.06 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.24 -6.38 9.99 -15.06 -0.15 -6.53 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -17.07 5.43 -59.90 -0.33 -17.39 16 10 C 0.15 2.70 5.80 -4.04 -0.02 2.68 16 11 C 0.17 2.65 2.59 -67.93 -0.18 2.48 16 12 H 0.09 1.63 7.58 -51.93 -0.39 1.23 16 13 N -0.71 -10.20 3.06 -53.80 -0.16 -10.36 16 14 C 0.52 7.59 4.59 -10.99 -0.05 7.54 16 15 O -0.51 -8.86 12.53 5.55 0.07 -8.79 16 16 C 0.03 0.39 2.38 -68.75 -0.16 0.23 16 17 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 18 C 0.08 0.93 6.27 37.21 0.23 1.16 16 19 O -0.38 -4.57 10.83 -35.23 -0.38 -4.95 16 20 C 0.06 0.65 7.01 37.21 0.26 0.91 16 21 C 0.00 0.03 5.36 -3.71 -0.02 0.01 16 22 N -0.51 -6.66 4.03 -227.72 -0.92 -7.57 16 23 C 0.00 -0.01 4.99 -3.83 -0.02 -0.03 16 24 C 0.27 3.34 5.58 37.16 0.21 3.55 16 25 F -0.21 -2.56 14.67 2.25 0.03 -2.53 16 26 F -0.19 -2.85 17.15 2.25 0.04 -2.81 16 27 C -0.16 -2.15 5.71 -90.63 -0.52 -2.67 16 28 C -0.18 -2.12 9.74 -26.71 -0.26 -2.38 16 29 C -0.19 -2.45 9.82 -26.71 -0.26 -2.71 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.38 9.50 7.33 -40.82 -0.30 9.20 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.40 5.68 8.60 -40.82 -0.35 5.33 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.03 7.89 -51.93 -0.41 0.62 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.11 1.17 5.57 -51.93 -0.29 0.88 16 40 H 0.05 0.54 8.13 -51.93 -0.42 0.12 16 41 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 42 H 0.11 1.74 5.90 -51.93 -0.31 1.43 16 43 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.11 1.36 8.11 -51.93 -0.42 0.94 16 45 H 0.09 1.06 6.41 -51.93 -0.33 0.72 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.12 1.81 5.02 -51.93 -0.26 1.55 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -30.79 384.91 -8.43 -39.22 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -7.25 Total: 15.02 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.04 Total: 3.83 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.68 Total: -61.39 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.31 Total: -13.74 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.07 Total: -5.34 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.79 -8.43 -39.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269099638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.318 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds