Wall clock time and date at job start Wed Apr 1 2020 04:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00184 * 2 1 4 4 H 1.48504 * 109.47097 * 269.99905 * 3 2 1 5 5 H 1.48500 * 109.46817 * 29.99651 * 3 2 1 6 6 H 1.48495 * 109.47256 * 149.99736 * 3 2 1 7 7 C 1.38812 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99930 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99761 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47157 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47267 * 295.00206 * 11 10 9 13 13 N 1.46501 * 109.46880 * 54.99906 * 11 10 9 14 14 C 1.34776 * 120.00098 * 204.99826 * 13 11 10 15 15 O 1.21285 * 119.99742 * 0.02562 * 14 13 11 16 16 C 1.50701 * 120.00044 * 180.02562 * 14 13 11 17 17 H 1.09005 * 109.54274 * 326.04794 * 16 14 13 18 18 C 1.53096 * 109.50842 * 86.16092 * 16 14 13 19 19 O 1.43011 * 109.25892 * 176.78220 * 18 16 14 20 20 C 1.43016 * 113.73758 * 301.32695 * 19 18 16 21 21 C 1.53095 * 109.25652 * 58.67626 * 20 19 18 22 22 N 1.47019 * 109.50340 * 205.94537 * 16 14 13 23 23 C 1.46898 * 111.00396 * 57.67454 * 22 16 14 24 24 C 1.52999 * 109.47037 * 199.42050 * 23 22 16 25 25 F 1.39895 * 109.46947 * 294.18971 * 24 23 22 26 26 F 1.39897 * 109.47103 * 54.18788 * 24 23 22 27 27 C 1.53001 * 109.47167 * 174.99693 * 11 10 9 28 28 C 1.52994 * 117.49969 * 248.62325 * 27 11 10 29 29 C 1.52994 * 117.49586 * 179.97438 * 27 11 10 30 30 H 0.96998 * 119.99480 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00311 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47235 * 60.00331 * 10 9 7 33 33 H 1.09003 * 109.47289 * 300.00009 * 10 9 7 34 34 H 0.97006 * 119.99846 * 25.00390 * 13 11 10 35 35 H 1.09002 * 109.50663 * 56.84561 * 18 16 14 36 36 H 1.09004 * 109.53974 * 296.74005 * 18 16 14 37 37 H 1.08991 * 109.51191 * 298.73592 * 20 19 18 38 38 H 1.09001 * 109.50421 * 178.60457 * 20 19 18 39 39 H 1.08999 * 109.50847 * 183.21219 * 21 20 19 40 40 H 1.09000 * 109.51067 * 63.08034 * 21 20 19 41 41 H 1.08996 * 109.46948 * 79.41500 * 23 22 16 42 42 H 1.09001 * 109.46563 * 319.41552 * 23 22 16 43 43 H 1.09000 * 109.46897 * 174.19023 * 24 23 22 44 44 H 1.08999 * 115.54696 * 34.33342 * 27 11 10 45 45 H 1.09001 * 117.50193 * 359.97438 * 28 27 11 46 46 H 1.09001 * 117.50081 * 145.02815 * 28 27 11 47 47 H 1.09003 * 117.50079 * 214.98204 * 29 27 11 48 48 H 1.09001 * 117.50088 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6567 0.0027 11 6 1.0637 -4.8197 0.0031 12 1 0.4971 -4.8130 0.9342 13 7 0.1447 -4.6768 -1.1288 14 6 -1.0798 -5.2376 -1.0776 15 8 -1.4210 -5.8602 -0.0943 16 6 -2.0250 -5.0910 -2.2422 17 1 -1.8788 -4.1174 -2.7101 18 6 -1.7508 -6.1963 -3.2654 19 8 -2.6988 -6.0979 -4.3316 20 6 -4.0593 -6.2043 -3.9039 21 6 -4.3569 -5.0991 -2.8872 22 7 -3.4114 -5.2038 -1.7663 23 6 -3.6991 -4.1943 -0.7387 24 6 -4.9291 -4.6209 0.0650 25 9 -6.0549 -4.6118 -0.7654 26 9 -4.7322 -5.9108 0.5695 27 6 1.8246 -6.1413 -0.1215 28 6 1.6648 -6.9284 -1.4236 29 6 1.0019 -7.4311 -0.1390 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0016 32 1 2.6846 -3.7137 0.8928 33 1 2.6847 -3.7153 -0.8872 34 1 0.4175 -4.1786 -1.9151 35 1 -1.8445 -7.1696 -2.7837 36 1 -0.7423 -6.0828 -3.6633 37 1 -4.2202 -7.1778 -3.4408 38 1 -4.7206 -6.0957 -4.7635 39 1 -5.3756 -5.2108 -2.5157 40 1 -4.2481 -4.1256 -3.3654 41 1 -3.8926 -3.2341 -1.2169 42 1 -2.8428 -4.1016 -0.0707 43 1 -5.0817 -3.9268 0.8916 44 1 2.7974 -6.1716 0.3692 45 1 1.0172 -6.5050 -2.1914 46 1 2.5325 -7.4769 -1.7900 47 1 1.4339 -8.3101 0.3395 48 1 -0.0814 -7.3381 -0.0621 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269099638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:12 Heat of formation + Delta-G solvation = -144.702276 kcal Electronic energy + Delta-G solvation = -33241.976274 eV Core-core repulsion = 28582.625203 eV Total energy + Delta-G solvation = -4659.351071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.88215 -47.86403 -41.82143 -40.19560 -38.33998 -36.79069 -36.54234 -34.83030 -33.29880 -32.34865 -31.42267 -29.73759 -27.33444 -26.16875 -25.66659 -23.49985 -23.39224 -23.03567 -22.63279 -21.15356 -20.90562 -19.31051 -18.81848 -18.43511 -18.07880 -17.83673 -17.49952 -17.21420 -16.89101 -16.75414 -16.42889 -16.01308 -15.81337 -15.44317 -15.26126 -15.13044 -14.98925 -14.92059 -14.79504 -14.45494 -14.22572 -13.96560 -13.65755 -13.36722 -13.29887 -13.10774 -12.86361 -12.81760 -12.68521 -12.64528 -12.53168 -12.26115 -12.15456 -12.09388 -11.83889 -11.55279 -11.25948 -10.99771 -10.94355 -10.79441 -10.56104 -9.95792 -9.62087 -9.00521 -7.95132 -5.23317 1.48899 1.49280 1.50121 1.57584 1.96688 2.42315 2.55573 2.82506 2.91417 2.98763 3.30207 3.40105 3.49316 3.59411 3.66464 3.75094 3.87139 3.90850 4.00445 4.02183 4.12380 4.19285 4.19777 4.21987 4.41911 4.43948 4.47670 4.51046 4.57039 4.62483 4.66578 4.79202 4.86988 4.87836 4.90509 5.08836 5.15635 5.28370 5.41543 5.48665 5.51436 5.58052 5.70266 5.99119 6.26269 6.54613 7.22943 7.34481 8.06882 8.31444 9.27798 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009059 B = 0.003932 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.986260 B = 7119.629035 C = 8526.450077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.271 1.271 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.150 3.850 11 C 0.182 3.818 12 H 0.062 0.938 13 N -0.703 5.703 14 C 0.522 3.478 15 O -0.540 6.540 16 C 0.035 3.965 17 H 0.073 0.927 18 C 0.085 3.915 19 O -0.387 6.387 20 C 0.062 3.938 21 C 0.004 3.996 22 N -0.518 5.518 23 C 0.000 4.000 24 C 0.274 3.726 25 F -0.209 7.209 26 F -0.207 7.207 27 C -0.168 4.168 28 C -0.160 4.160 29 C -0.189 4.189 30 H 0.250 0.750 31 H 0.375 0.625 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.408 0.592 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.061 0.939 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.143 0.857 44 H 0.122 0.878 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.098 0.902 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 -13.985 -6.954 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.196 1.196 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.384 5.384 10 C 0.023 3.977 11 C 0.077 3.923 12 H 0.081 0.919 13 N -0.354 5.354 14 C 0.308 3.692 15 O -0.418 6.418 16 C -0.077 4.077 17 H 0.090 0.910 18 C 0.008 3.992 19 O -0.305 6.305 20 C -0.015 4.015 21 C -0.123 4.123 22 N -0.243 5.243 23 C -0.129 4.129 24 C 0.220 3.780 25 F -0.190 7.190 26 F -0.189 7.189 27 C -0.187 4.187 28 C -0.197 4.197 29 C -0.226 4.226 30 H 0.058 0.942 31 H 0.207 0.793 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.244 0.756 35 H 0.080 0.920 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.128 0.872 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.160 0.840 44 H 0.140 0.860 45 H 0.109 0.891 46 H 0.127 0.873 47 H 0.117 0.883 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.319 -14.800 -6.226 17.255 hybrid contribution 0.097 2.175 -0.041 2.178 sum -6.221 -12.625 -6.267 15.407 Atomic orbital electron populations 1.69794 1.06455 1.25872 1.59496 1.25453 0.96284 1.00738 1.03700 0.85215 0.77729 0.79872 0.77361 1.21416 1.22631 1.19643 1.19598 0.91547 0.85134 1.41117 0.90503 1.42470 1.05603 1.00806 1.89504 1.21029 0.93402 0.83863 0.99366 1.20460 0.89503 0.93284 0.89026 0.91940 1.45982 1.14447 1.54387 1.20607 1.20273 0.82038 0.78655 0.88243 1.90669 1.75865 1.41281 1.33944 1.22332 0.89079 1.01741 0.94586 0.90959 1.22535 0.94184 0.95902 0.86599 1.88005 1.16273 1.93932 1.32260 1.22871 0.82830 0.97508 0.98245 1.23288 0.98068 0.99559 0.91368 1.61961 1.01459 1.48833 1.12094 1.23280 0.98798 0.94756 0.96076 1.22092 0.82367 0.82405 0.91096 1.92866 1.54990 1.96765 1.74410 1.92980 1.95262 1.42735 1.87882 1.22611 1.01043 0.91125 1.03936 1.22979 1.03248 1.02707 0.90784 1.23253 1.00287 0.96999 1.02025 0.94166 0.79326 0.94634 0.94201 0.75619 0.91956 0.86168 0.92028 0.85501 0.87206 0.93363 0.90562 0.89286 0.84031 0.85984 0.89070 0.87305 0.88320 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.12 13.06 21.65 0.28 -55.84 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.97 44.33 29.55 68.60 2.03 46.36 16 4 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.24 -12.70 9.99 84.03 0.84 -11.86 16 8 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.74 -34.64 5.43 -343.44 -1.87 -36.51 16 10 C 0.15 5.40 5.80 86.38 0.50 5.90 16 11 C 0.18 5.68 2.59 44.99 0.12 5.79 16 12 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 13 N -0.70 -20.24 3.06 -442.52 -1.35 -21.59 16 14 C 0.52 15.50 4.59 87.66 0.40 15.91 16 15 O -0.54 -19.20 12.53 -3.05 -0.04 -19.24 16 16 C 0.03 0.90 2.38 44.18 0.11 1.00 16 17 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 18 C 0.09 1.89 6.27 72.01 0.45 2.34 16 19 O -0.39 -8.70 10.83 -148.98 -1.61 -10.32 16 20 C 0.06 1.18 7.01 72.01 0.50 1.68 16 21 C 0.00 0.09 5.36 86.31 0.46 0.56 16 22 N -0.52 -13.58 4.03 -874.38 -3.52 -17.10 16 23 C 0.00 0.00 4.99 86.30 0.43 0.43 16 24 C 0.27 6.61 5.58 71.98 0.40 7.01 16 25 F -0.21 -4.91 14.67 44.97 0.66 -4.25 16 26 F -0.21 -6.28 17.15 44.97 0.77 -5.51 16 27 C -0.17 -4.24 5.71 -10.80 -0.06 -4.30 16 28 C -0.16 -3.46 9.74 30.61 0.30 -3.16 16 29 C -0.19 -4.76 9.82 30.61 0.30 -4.46 16 30 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.37 18.87 7.33 -92.71 -0.68 18.19 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.41 11.26 8.60 -92.70 -0.80 10.47 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.12 2.19 7.89 -2.38 -0.02 2.17 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.11 2.30 5.57 -2.39 -0.01 2.28 16 40 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 41 H 0.08 1.91 7.99 -2.39 -0.02 1.89 16 42 H 0.09 2.85 5.90 -2.39 -0.01 2.84 16 43 H 0.14 2.57 8.14 -2.39 -0.02 2.56 16 44 H 0.12 2.79 8.11 -2.39 -0.02 2.77 16 45 H 0.09 1.95 6.41 -2.39 -0.02 1.93 16 46 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.09 2.89 5.02 -2.39 -0.01 2.88 16 Total: -1.00 -65.66 384.91 0.10 -65.57 By element: Atomic # 1 Polarization: 45.36 SS G_CDS: -0.47 Total: 44.89 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 5.22 Total: 13.54 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -6.46 Total: -131.04 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -1.65 Total: -29.55 kcal Atomic # 9 Polarization: -11.19 SS G_CDS: 1.43 Total: -9.76 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -65.66 0.10 -65.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269099638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.135 kcal (2) G-P(sol) polarization free energy of solvation -65.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds