Wall clock time and date at job start Wed Apr 1 2020 04:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00177 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.47445 * 110.99993 * 69.87046 * 13 12 10 15 15 C 1.54316 * 107.22955 * 123.25758 * 14 13 12 16 16 C 1.55136 * 103.02142 * 22.28484 * 15 14 13 17 17 H 1.08994 * 110.99138 * 82.47321 * 16 15 14 18 18 N 1.46498 * 110.99021 * 206.25421 * 16 15 14 19 19 C 1.34779 * 120.00374 * 273.53909 * 18 16 15 20 20 O 1.21603 * 119.99246 * 0.02562 * 19 18 16 21 21 C 1.47421 * 120.00340 * 179.97438 * 19 18 16 22 22 C 1.41206 * 126.44245 * 359.70207 * 21 19 18 23 23 N 1.30279 * 108.03435 * 179.89469 * 22 21 19 24 24 N 1.40525 * 109.01746 * 0.50937 * 23 22 21 25 25 C 1.34025 * 108.16373 * 359.51515 * 24 23 22 26 26 C 1.51382 * 110.33592 * 180.25910 * 25 24 23 27 27 C 1.54566 * 104.15087 * 16.46256 * 26 25 24 28 28 C 1.47252 * 140.81281 * 179.40655 * 24 23 22 29 29 C 1.47847 * 110.99838 * 190.71563 * 13 12 10 30 30 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 32 32 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 33 33 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 34 34 H 1.08996 * 109.88647 * 242.66232 * 14 13 12 35 35 H 1.08994 * 109.88900 * 3.85380 * 14 13 12 36 36 H 1.09003 * 110.70586 * 140.66565 * 15 14 13 37 37 H 1.08996 * 110.70638 * 263.72470 * 15 14 13 38 38 H 0.97008 * 120.00448 * 93.55093 * 18 16 15 39 39 H 1.08002 * 125.98232 * 0.03233 * 22 21 19 40 40 H 1.09003 * 110.49551 * 135.13170 * 26 25 24 41 41 H 1.09004 * 110.49732 * 257.65544 * 26 25 24 42 42 H 1.08993 * 110.99542 * 93.06925 * 27 26 25 43 43 H 1.08999 * 110.99067 * 216.85614 * 27 26 25 44 44 H 1.08997 * 110.22803 * 43.97022 * 28 24 23 45 45 H 1.08993 * 110.22717 * 282.00608 * 28 24 23 46 46 H 1.09002 * 110.37141 * 332.46656 * 29 13 12 47 47 H 1.09002 * 110.37215 * 94.80650 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 2.9010 -6.0801 1.2668 15 6 2.6538 -7.5024 1.8120 16 6 2.3010 -8.3097 0.5351 17 1 3.2030 -8.6226 0.0093 18 7 1.4591 -9.4638 0.8598 19 6 2.0265 -10.6295 1.2285 20 8 3.2373 -10.7229 1.2919 21 6 1.1793 -11.7907 1.5558 22 6 -0.2320 -11.8319 1.5345 23 7 -0.6057 -13.0306 1.8820 24 7 0.5349 -13.8058 2.1518 25 6 1.6171 -13.0421 1.9467 26 6 2.8786 -13.8336 2.2182 27 6 2.4098 -15.3064 2.2096 28 6 0.9184 -15.1611 2.5810 29 6 1.5122 -7.2621 -0.2895 30 1 -0.4849 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0068 32 1 0.6169 -4.9255 0.8690 33 1 0.6176 -4.9158 -0.9109 34 1 3.9692 -5.9190 1.1217 35 1 2.5037 -5.3418 1.9633 36 1 3.5550 -7.8974 2.2810 37 1 1.8215 -7.5061 2.5157 38 1 0.4932 -9.3892 0.8094 39 1 -0.8869 -11.0137 1.2736 40 1 3.6133 -13.6624 1.4314 41 1 3.2936 -13.5686 3.1906 42 1 2.5244 -15.7470 1.2193 43 1 2.9441 -15.8906 2.9589 44 1 0.3241 -15.9062 2.0522 45 1 0.7860 -15.2670 3.6576 46 1 0.4768 -7.2149 0.0478 47 1 1.5556 -7.5042 -1.3515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269134090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:50 Heat of formation + Delta-G solvation = 0.325773 kcal Electronic energy + Delta-G solvation = -29354.055501 eV Core-core repulsion = 25151.682504 eV Total energy + Delta-G solvation = -4202.372997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.86544 -40.99185 -40.11047 -38.88451 -37.30665 -35.97901 -35.29786 -33.27900 -32.51386 -31.69748 -30.44959 -29.73699 -28.53244 -27.61570 -25.93870 -23.76777 -23.09416 -22.35791 -22.13460 -21.41559 -20.77628 -20.62328 -19.81922 -18.63196 -17.69008 -17.53700 -17.45924 -16.83771 -16.48534 -16.14452 -15.93392 -15.68581 -15.58252 -15.35895 -15.26530 -14.78410 -14.65123 -14.54588 -14.38666 -14.25945 -14.04033 -13.72150 -13.54620 -13.27173 -13.03073 -12.94258 -12.71234 -12.52551 -12.45007 -12.38791 -12.30937 -12.12744 -12.10436 -11.99100 -11.74887 -11.47918 -10.94491 -10.37355 -10.29921 -10.15705 -9.97567 -9.63277 -9.20914 -8.44553 -5.92584 0.47228 1.11078 1.21215 1.37627 1.42687 1.56751 2.09316 2.10747 2.31972 2.43006 2.92145 3.06050 3.22585 3.35523 3.47019 3.56159 3.66254 3.80029 3.88445 3.96025 4.06559 4.13291 4.27211 4.31644 4.35180 4.39534 4.47507 4.47908 4.53137 4.55853 4.67159 4.74360 4.85483 4.88073 4.97432 4.99580 5.04738 5.06929 5.21315 5.37613 5.43507 5.49781 5.65644 5.88144 6.02399 6.13187 6.51702 6.64142 6.66793 7.16366 7.31368 7.60208 8.16889 8.73121 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.036025 B = 0.001624 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.061586 B =17242.034406 C =17731.873526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.331 4.331 8 H 0.077 0.923 9 N -0.576 5.576 10 C 0.440 3.560 11 O -0.617 6.617 12 C 0.055 3.945 13 N -0.527 5.527 14 C 0.062 3.938 15 C -0.141 4.141 16 C 0.150 3.850 17 H 0.084 0.916 18 N -0.703 5.703 19 C 0.597 3.403 20 O -0.586 6.586 21 C -0.309 4.309 22 C 0.093 3.907 23 N -0.308 5.308 24 N -0.386 5.386 25 C 0.129 3.871 26 C -0.076 4.076 27 C -0.117 4.117 28 C 0.113 3.887 29 C 0.044 3.956 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.415 0.585 39 H 0.226 0.774 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.137 0.863 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 -33.045 5.498 33.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.095 0.905 9 N -0.214 5.214 10 C 0.227 3.773 11 O -0.503 6.503 12 C -0.076 4.076 13 N -0.252 5.252 14 C -0.066 4.066 15 C -0.180 4.180 16 C 0.044 3.956 17 H 0.102 0.898 18 N -0.355 5.355 19 C 0.386 3.614 20 O -0.467 6.467 21 C -0.324 4.324 22 C -0.095 4.095 23 N -0.126 5.126 24 N -0.165 5.165 25 C -0.007 4.007 26 C -0.114 4.114 27 C -0.155 4.155 28 C -0.006 4.006 29 C -0.083 4.083 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.252 0.748 39 H 0.242 0.758 40 H 0.116 0.884 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.156 0.844 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.099 0.901 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.105 -33.826 5.395 34.394 hybrid contribution -0.436 1.863 0.416 1.958 sum -3.541 -31.963 5.811 32.680 Atomic orbital electron populations 1.69670 1.06725 1.29126 1.50640 1.25994 0.96539 1.02255 0.96438 0.84894 0.77986 0.77287 0.78302 1.19993 1.19601 1.19630 1.19677 0.92626 0.84105 1.49680 0.90537 1.41921 1.09285 1.04630 1.65527 1.20864 0.88332 0.86044 0.82043 1.90502 1.15879 1.87912 1.55984 1.21952 0.93453 0.88376 1.03840 1.63115 1.27028 1.02632 1.32386 1.22526 0.99416 0.95737 0.88919 1.23105 1.02697 0.94122 0.98115 1.21781 0.94315 0.84769 0.94708 0.89767 1.45451 1.10708 1.09883 1.69423 1.17443 0.86573 0.82094 0.75257 1.90747 1.15822 1.84682 1.55416 1.19501 0.93872 0.94759 1.24281 1.24567 0.93278 0.95604 0.96015 1.77138 1.07051 1.04250 1.24190 1.50538 1.03630 1.12681 1.49619 1.23109 0.92586 0.91700 0.93279 1.21177 0.92097 0.93148 1.05014 1.22926 0.91675 0.94928 1.05983 1.22937 0.97541 0.77501 1.02610 1.23288 0.97161 0.86476 1.01391 0.91368 0.76969 0.90779 0.86705 0.92623 0.93972 0.91140 0.89876 0.74795 0.75797 0.88387 0.87283 0.88468 0.84444 0.87246 0.87250 0.90083 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.74 13.05 21.67 0.28 -49.46 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 3 Si 0.99 43.45 29.55 68.60 2.03 45.47 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.58 -29.67 5.29 -306.97 -1.62 -31.29 16 10 C 0.44 21.12 7.43 87.66 0.65 21.77 16 11 O -0.62 -34.89 15.12 -3.07 -0.05 -34.94 16 12 C 0.06 1.86 5.03 85.56 0.43 2.29 16 13 N -0.53 -17.00 4.85 -890.10 -4.32 -21.31 16 14 C 0.06 2.06 5.65 86.65 0.49 2.55 16 15 C -0.14 -3.60 6.64 31.77 0.21 -3.39 16 16 C 0.15 3.46 3.31 46.38 0.15 3.61 16 17 H 0.08 2.34 7.73 -2.39 -0.02 2.32 16 18 N -0.70 -12.91 5.22 -439.27 -2.29 -15.21 16 19 C 0.60 13.99 7.81 86.66 0.68 14.67 16 20 O -0.59 -18.15 16.64 -4.04 -0.07 -18.21 16 21 C -0.31 -6.18 6.13 -20.13 -0.12 -6.31 16 22 C 0.09 1.50 11.50 85.65 0.98 2.49 16 23 N -0.31 -5.99 12.64 -56.42 -0.71 -6.70 16 24 N -0.39 -6.20 4.81 -328.35 -1.58 -7.77 16 25 C 0.13 2.30 7.31 42.44 0.31 2.61 16 26 C -0.08 -0.81 6.86 30.60 0.21 -0.60 16 27 C -0.12 -0.30 7.18 31.59 0.23 -0.07 16 28 C 0.11 0.69 7.78 86.70 0.67 1.36 16 29 C 0.04 0.97 6.31 86.77 0.55 1.52 16 30 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 32 H 0.07 2.17 7.96 -2.38 -0.02 2.15 16 33 H 0.11 3.30 8.07 -2.39 -0.02 3.28 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.04 1.49 7.31 -2.39 -0.02 1.48 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.41 4.74 7.47 -92.70 -0.69 4.05 16 39 H 0.23 1.76 7.50 -2.91 -0.02 1.74 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.14 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.08 1.31 7.67 -2.39 -0.02 1.30 16 47 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -83.09 391.09 -2.01 -85.10 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: -0.40 Total: 30.25 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 6.72 Total: 24.07 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -10.24 Total: -131.75 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -0.11 Total: -53.15 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -83.09 -2.01 -85.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269134090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.430 kcal (2) G-P(sol) polarization free energy of solvation -83.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds