Wall clock time and date at job start Wed Apr 1 2020 04:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.46848 * 124.36602 * 269.72870 * 11 10 9 13 13 C 1.54826 * 105.41543 * 162.99474 * 12 11 10 14 14 C 1.53883 * 101.51129 * 25.11600 * 13 12 11 15 15 C 1.53602 * 110.35476 * 216.03026 * 14 13 12 16 16 C 1.55312 * 102.79749 * 216.75674 * 15 14 13 17 17 C 1.54979 * 101.73901 * 35.03510 * 16 15 14 18 18 N 1.46653 * 110.90420 * 96.31515 * 14 13 12 19 19 C 1.46902 * 110.99701 * 357.85064 * 18 14 13 20 20 C 1.50701 * 109.47247 * 190.00362 * 19 18 14 21 21 C 1.38231 * 120.40439 * 89.99477 * 20 19 18 22 22 N 1.31852 * 120.81567 * 180.02562 * 21 20 19 23 23 C 1.31867 * 121.75416 * 0.02562 * 22 21 20 24 24 C 1.38427 * 120.72443 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.44199 * 180.02562 * 24 23 22 26 26 C 1.38586 * 120.40338 * 269.72933 * 20 19 18 27 27 C 1.34656 * 124.36999 * 90.02148 * 11 10 9 28 28 O 1.21278 * 125.07706 * 0.84317 * 27 11 10 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.09009 * 110.23537 * 282.12591 * 12 11 10 35 35 H 1.08997 * 110.24490 * 44.10710 * 12 11 10 36 36 H 1.08998 * 111.21967 * 266.98125 * 13 12 11 37 37 H 1.09004 * 110.88397 * 143.09898 * 13 12 11 38 38 H 1.09002 * 110.74892 * 335.08223 * 15 14 13 39 39 H 1.09000 * 110.74474 * 98.42949 * 15 14 13 40 40 H 1.09000 * 110.97593 * 276.92152 * 16 15 14 41 41 H 1.09000 * 110.97742 * 153.14730 * 16 15 14 42 42 H 1.09003 * 110.36707 * 204.50573 * 17 16 15 43 43 H 1.08997 * 110.45754 * 82.22897 * 17 16 15 44 44 H 1.09000 * 109.47083 * 310.00246 * 19 18 14 45 45 H 1.08999 * 109.47449 * 69.99846 * 19 18 14 46 46 H 1.07997 * 119.59661 * 359.97438 * 21 20 19 47 47 H 1.07994 * 119.64005 * 179.97438 * 23 22 21 48 48 H 1.08005 * 120.80207 * 359.96823 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5126 -4.9308 -0.0168 12 6 1.1026 -5.6573 1.1917 13 6 0.0176 -6.6572 0.7226 14 6 0.3864 -6.8371 -0.7605 15 6 -0.8828 -6.9928 -1.6116 16 6 -0.4531 -8.0315 -2.6833 17 6 0.4965 -8.9482 -1.8710 18 7 1.2124 -8.0335 -0.9529 19 6 1.4946 -8.6903 0.3305 20 6 2.5361 -9.7607 0.1287 21 6 3.8799 -9.4616 0.2531 22 7 4.7979 -10.3917 0.0779 23 6 4.4775 -11.6353 -0.2213 24 6 3.1524 -12.0099 -0.3623 25 9 2.8306 -13.2859 -0.6684 26 6 2.1580 -11.0581 -0.1784 27 6 1.1333 -5.5841 -1.1315 28 8 1.3597 -5.2175 -2.2652 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 1.9524 -6.1911 1.6174 35 1 0.6855 -4.9661 1.9240 36 1 -0.9812 -6.2339 0.8283 37 1 0.0990 -7.6006 1.2627 38 1 -1.7065 -7.3770 -1.0099 39 1 -1.1532 -6.0456 -2.0784 40 1 0.0780 -7.5488 -3.5037 41 1 -1.3133 -8.5900 -3.0524 42 1 1.2017 -9.4477 -2.5352 43 1 -0.0757 -9.6830 -1.3046 44 1 1.8649 -7.9527 1.0424 45 1 0.5804 -9.1410 0.7168 46 1 4.1817 -8.4535 0.4961 47 1 5.2575 -12.3697 -0.3578 48 1 1.1152 -11.3216 -0.2771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272794611.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:32 Heat of formation + Delta-G solvation = -20.690433 kcal Electronic energy + Delta-G solvation = -31041.353526 eV Core-core repulsion = 26818.149236 eV Total energy + Delta-G solvation = -4223.204290 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.34334 -41.43617 -40.29702 -37.93054 -35.97936 -34.24574 -33.63433 -32.13191 -31.78603 -30.62566 -29.21069 -27.84900 -26.44867 -25.02385 -24.13634 -23.55491 -22.75596 -21.89007 -21.19364 -20.06797 -18.58372 -17.75366 -17.59372 -17.28902 -16.92164 -16.66861 -16.17153 -15.97025 -15.36975 -15.17952 -14.62917 -14.53306 -14.38130 -14.17653 -13.94073 -13.64891 -13.53753 -13.45586 -13.19428 -12.99931 -12.74148 -12.64234 -12.46354 -12.23169 -12.02713 -11.78618 -11.46416 -11.32173 -11.10891 -11.03146 -10.96384 -10.82675 -10.67897 -10.18057 -10.02375 -9.96090 -9.88168 -9.55414 -9.27448 -9.19176 -8.46403 -8.38445 -8.00663 -6.03858 -4.06979 0.52500 0.67829 2.83157 3.25075 3.30007 3.37172 3.40775 3.48898 3.59445 3.96383 4.02010 4.16674 4.20361 4.29130 4.44600 4.45604 4.49497 4.51941 4.69337 4.73156 4.82734 4.96886 5.01856 5.12506 5.19198 5.28089 5.32683 5.40521 5.41446 5.45857 5.59011 5.64289 5.69337 5.73306 5.77152 5.85967 5.94955 6.03996 6.16461 6.23697 6.47782 6.62760 6.66232 6.80592 7.01968 7.46445 7.50530 7.66442 7.84890 7.96281 8.32873 8.72222 9.00100 9.57273 11.07605 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018109 B = 0.002472 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.779450 B =11325.835131 C =12168.443285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.012 3.988 10 C 0.129 3.871 11 N -0.610 5.610 12 C 0.104 3.896 13 C -0.163 4.163 14 C 0.070 3.930 15 C -0.120 4.120 16 C -0.127 4.127 17 C 0.044 3.956 18 N -0.498 5.498 19 C 0.083 3.917 20 C -0.096 4.096 21 C 0.113 3.887 22 N -0.455 5.455 23 C 0.072 3.928 24 C 0.046 3.954 25 F -0.132 7.132 26 C -0.104 4.104 27 C 0.540 3.460 28 O -0.520 6.520 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.020 0.980 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.048 0.952 44 H 0.101 0.899 45 H 0.058 0.942 46 H 0.166 0.834 47 H 0.166 0.834 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 -25.969 3.200 26.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.026 4.026 10 C 0.009 3.991 11 N -0.343 5.343 12 C -0.020 4.020 13 C -0.201 4.201 14 C -0.023 4.023 15 C -0.158 4.158 16 C -0.165 4.165 17 C -0.083 4.083 18 N -0.223 5.223 19 C -0.044 4.044 20 C -0.098 4.098 21 C -0.044 4.044 22 N -0.162 5.162 23 C -0.087 4.087 24 C 0.024 3.976 25 F -0.111 7.111 26 C -0.131 4.131 27 C 0.324 3.676 28 O -0.395 6.395 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.119 0.881 45 H 0.076 0.924 46 H 0.183 0.817 47 H 0.183 0.817 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.205 -25.233 2.464 25.381 hybrid contribution -1.351 0.278 0.301 1.412 sum -0.146 -24.954 2.764 25.107 Atomic orbital electron populations 1.69983 1.06110 1.26574 1.50552 1.25003 0.94854 0.99332 0.95117 0.86501 0.80136 0.83579 0.77584 1.19627 1.20949 1.21009 1.21132 0.93101 0.90666 1.51061 0.92404 1.19408 0.94441 0.91108 0.97644 1.21793 0.94997 0.80830 1.01454 1.48524 1.56508 1.23368 1.05914 1.22074 0.96431 0.94471 0.89040 1.23380 1.00623 1.01075 0.95002 1.21925 0.93152 0.91404 0.95788 1.22625 0.95111 1.01255 0.96836 1.22745 0.98802 0.96515 0.98469 1.23186 0.95647 0.94491 0.94980 1.63253 1.43878 1.04397 1.10727 1.21465 0.95676 0.94654 0.92629 1.20709 0.96306 0.93795 0.99027 1.22835 0.88063 0.98954 0.94590 1.67803 1.37586 1.00492 1.10359 1.22942 0.93485 0.94493 0.97765 1.18785 0.94969 0.80094 1.03738 1.91526 1.93474 1.35495 1.90568 1.21574 1.00098 0.92446 0.98957 1.19970 0.78907 0.83960 0.84754 1.90675 1.56490 1.71116 1.21193 0.93008 0.96524 0.96148 0.91082 0.91628 0.91617 0.89929 0.89038 0.88398 0.90541 0.89598 0.89738 0.90593 0.90108 0.93356 0.88064 0.92396 0.81729 0.81712 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 10 C 0.13 2.69 5.88 -4.05 -0.02 2.67 16 11 N -0.61 -10.68 2.94 -172.39 -0.51 -11.18 16 12 C 0.10 1.28 6.99 -2.89 -0.02 1.26 16 13 C -0.16 -1.62 5.53 -25.31 -0.14 -1.76 16 14 C 0.07 0.89 0.99 -132.20 -0.13 0.76 16 15 C -0.12 -1.39 5.86 -25.19 -0.15 -1.53 16 16 C -0.13 -1.32 7.08 -24.46 -0.17 -1.50 16 17 C 0.04 0.41 5.67 -2.14 -0.01 0.40 16 18 N -0.50 -5.47 4.84 -218.85 -1.06 -6.53 16 19 C 0.08 0.67 3.58 -4.97 -0.02 0.66 16 20 C -0.10 -0.81 5.11 -104.50 -0.53 -1.35 16 21 C 0.11 1.10 10.86 -17.55 -0.19 0.91 16 22 N -0.46 -4.79 10.36 -13.20 -0.14 -4.92 16 23 C 0.07 0.63 11.17 -17.47 -0.20 0.44 16 24 C 0.05 0.39 7.35 -39.28 -0.29 0.10 16 25 F -0.13 -1.17 17.28 2.25 0.04 -1.13 16 26 C -0.10 -0.81 9.11 -39.22 -0.36 -1.17 16 27 C 0.54 9.82 6.97 -11.13 -0.08 9.74 16 28 O -0.52 -11.77 17.42 5.56 0.10 -11.67 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.59 7.93 -51.93 -0.41 1.18 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.07 0.66 6.75 -51.92 -0.35 0.31 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 0.90 7.84 -51.93 -0.41 0.49 16 37 H 0.10 0.68 4.85 -51.93 -0.25 0.43 16 38 H 0.08 0.70 7.81 -51.93 -0.41 0.29 16 39 H 0.09 1.21 7.79 -51.93 -0.40 0.80 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.35 7.09 -51.93 -0.37 -0.02 16 44 H 0.10 0.79 4.99 -51.93 -0.26 0.53 16 45 H 0.06 0.36 6.75 -51.93 -0.35 0.01 16 46 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 47 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 48 H 0.14 0.86 7.59 -52.48 -0.40 0.46 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -34.48 387.53 -9.83 -44.31 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.95 Total: -1.63 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -2.87 Total: -3.60 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.97 Total: -48.73 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.10 Total: -11.67 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.48 -9.83 -44.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272794611.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.622 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds