Wall clock time and date at job start Wed Apr 1 2020 04:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.46848 * 124.36602 * 269.72870 * 11 10 9 13 13 C 1.54826 * 105.41543 * 162.99474 * 12 11 10 14 14 C 1.53883 * 101.51129 * 25.11600 * 13 12 11 15 15 C 1.53602 * 110.35476 * 216.03026 * 14 13 12 16 16 C 1.55312 * 102.79749 * 216.75674 * 15 14 13 17 17 C 1.54979 * 101.73901 * 35.03510 * 16 15 14 18 18 N 1.46653 * 110.90420 * 96.31515 * 14 13 12 19 19 C 1.46902 * 110.99701 * 357.85064 * 18 14 13 20 20 C 1.50701 * 109.47247 * 190.00362 * 19 18 14 21 21 C 1.38231 * 120.40439 * 89.99477 * 20 19 18 22 22 N 1.31852 * 120.81567 * 180.02562 * 21 20 19 23 23 C 1.31867 * 121.75416 * 0.02562 * 22 21 20 24 24 C 1.38427 * 120.72443 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.44199 * 180.02562 * 24 23 22 26 26 C 1.38586 * 120.40338 * 269.72933 * 20 19 18 27 27 C 1.34656 * 124.36999 * 90.02148 * 11 10 9 28 28 O 1.21278 * 125.07706 * 0.84317 * 27 11 10 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.09009 * 110.23537 * 282.12591 * 12 11 10 35 35 H 1.08997 * 110.24490 * 44.10710 * 12 11 10 36 36 H 1.08998 * 111.21967 * 266.98125 * 13 12 11 37 37 H 1.09004 * 110.88397 * 143.09898 * 13 12 11 38 38 H 1.09002 * 110.74892 * 335.08223 * 15 14 13 39 39 H 1.09000 * 110.74474 * 98.42949 * 15 14 13 40 40 H 1.09000 * 110.97593 * 276.92152 * 16 15 14 41 41 H 1.09000 * 110.97742 * 153.14730 * 16 15 14 42 42 H 1.09003 * 110.36707 * 204.50573 * 17 16 15 43 43 H 1.08997 * 110.45754 * 82.22897 * 17 16 15 44 44 H 1.09000 * 109.47083 * 310.00246 * 19 18 14 45 45 H 1.08999 * 109.47449 * 69.99846 * 19 18 14 46 46 H 1.07997 * 119.59661 * 359.97438 * 21 20 19 47 47 H 1.07994 * 119.64005 * 179.97438 * 23 22 21 48 48 H 1.08005 * 120.80207 * 359.96823 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5126 -4.9308 -0.0168 12 6 1.1026 -5.6573 1.1917 13 6 0.0176 -6.6572 0.7226 14 6 0.3864 -6.8371 -0.7605 15 6 -0.8828 -6.9928 -1.6116 16 6 -0.4531 -8.0315 -2.6833 17 6 0.4965 -8.9482 -1.8710 18 7 1.2124 -8.0335 -0.9529 19 6 1.4946 -8.6903 0.3305 20 6 2.5361 -9.7607 0.1287 21 6 3.8799 -9.4616 0.2531 22 7 4.7979 -10.3917 0.0779 23 6 4.4775 -11.6353 -0.2213 24 6 3.1524 -12.0099 -0.3623 25 9 2.8306 -13.2859 -0.6684 26 6 2.1580 -11.0581 -0.1784 27 6 1.1333 -5.5841 -1.1315 28 8 1.3597 -5.2175 -2.2652 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 1.9524 -6.1911 1.6174 35 1 0.6855 -4.9661 1.9240 36 1 -0.9812 -6.2339 0.8283 37 1 0.0990 -7.6006 1.2627 38 1 -1.7065 -7.3770 -1.0099 39 1 -1.1532 -6.0456 -2.0784 40 1 0.0780 -7.5488 -3.5037 41 1 -1.3133 -8.5900 -3.0524 42 1 1.2017 -9.4477 -2.5352 43 1 -0.0757 -9.6830 -1.3046 44 1 1.8649 -7.9527 1.0424 45 1 0.5804 -9.1410 0.7168 46 1 4.1817 -8.4535 0.4961 47 1 5.2575 -12.3697 -0.3578 48 1 1.1152 -11.3216 -0.2771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272794611.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:32 Heat of formation + Delta-G solvation = -44.155610 kcal Electronic energy + Delta-G solvation = -31042.371052 eV Core-core repulsion = 26818.149236 eV Total energy + Delta-G solvation = -4224.221816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.98411 -42.42131 -41.03921 -39.07633 -37.40611 -35.56610 -34.94781 -33.56103 -32.63292 -31.37998 -30.79992 -28.86869 -27.36809 -26.68499 -24.81571 -24.58859 -23.69430 -23.22895 -22.27454 -21.19632 -19.82100 -18.69330 -18.41012 -18.25934 -18.01997 -17.74967 -17.28883 -16.81546 -16.63787 -16.45442 -16.10877 -15.77547 -15.23700 -15.02692 -14.87516 -14.73477 -14.47061 -14.36329 -14.33863 -14.18303 -14.05003 -13.75970 -13.57307 -13.42359 -13.26285 -12.93305 -12.89150 -12.54883 -12.44792 -12.20604 -12.01800 -11.97511 -11.90791 -11.82025 -11.69968 -11.38987 -10.84515 -10.80004 -10.61542 -10.59053 -9.92756 -9.52320 -9.30849 -8.24588 -6.36868 -0.12005 0.06358 1.38212 1.39788 1.52779 1.59740 2.12380 2.40883 2.55190 2.95822 3.08990 3.09151 3.27808 3.30065 3.47702 3.67142 3.68429 3.76807 3.85406 3.90067 3.97606 4.08758 4.21766 4.25599 4.34458 4.38434 4.51947 4.54068 4.63079 4.64698 4.74881 4.76561 4.82792 4.84274 4.88663 4.91185 4.97705 5.04024 5.06511 5.14550 5.27952 5.33417 5.46515 5.60656 5.61521 5.80212 5.84151 6.00678 6.16289 6.36656 6.78668 6.81504 7.30375 7.33490 8.87683 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018109 B = 0.002472 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.779450 B =11325.835131 C =12168.443285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.025 3.975 10 C 0.144 3.856 11 N -0.618 5.618 12 C 0.093 3.907 13 C -0.148 4.148 14 C 0.082 3.918 15 C -0.121 4.121 16 C -0.126 4.126 17 C 0.050 3.950 18 N -0.520 5.520 19 C 0.083 3.917 20 C -0.094 4.094 21 C 0.098 3.902 22 N -0.483 5.483 23 C 0.064 3.936 24 C 0.040 3.960 25 F -0.134 7.134 26 C -0.095 4.095 27 C 0.519 3.481 28 O -0.583 6.583 29 H 0.264 0.736 30 H 0.003 0.997 31 H -0.029 1.029 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.143 0.857 38 H 0.114 0.886 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.164 0.836 47 H 0.181 0.819 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 -28.146 5.292 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.013 4.013 10 C 0.022 3.978 11 N -0.350 5.350 12 C -0.028 4.028 13 C -0.186 4.186 14 C -0.011 4.011 15 C -0.160 4.160 16 C -0.164 4.164 17 C -0.077 4.077 18 N -0.246 5.246 19 C -0.044 4.044 20 C -0.096 4.096 21 C -0.059 4.059 22 N -0.191 5.191 23 C -0.094 4.094 24 C 0.018 3.982 25 F -0.113 7.113 26 C -0.122 4.122 27 C 0.307 3.693 28 O -0.462 6.462 29 H 0.073 0.927 30 H 0.022 0.978 31 H -0.010 1.010 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.161 0.839 38 H 0.132 0.868 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.124 0.876 45 H 0.111 0.889 46 H 0.181 0.819 47 H 0.198 0.802 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.699 -27.451 4.600 27.843 hybrid contribution -1.169 0.934 -0.396 1.548 sum -0.470 -26.517 4.204 26.852 Atomic orbital electron populations 1.70115 1.07904 1.27824 1.51332 1.25999 0.95793 1.03506 0.94434 0.85346 0.79137 0.78424 0.77825 1.18368 1.20805 1.19753 1.21579 0.93703 0.91873 1.51036 0.91706 1.19200 0.94527 0.93044 0.94491 1.21313 0.93861 0.81220 1.01422 1.48639 1.55911 1.22273 1.08158 1.22475 0.98604 0.94859 0.86905 1.23467 0.99813 1.02326 0.93003 1.21667 0.92485 0.89413 0.97546 1.22675 0.95807 0.99996 0.97488 1.22726 0.99814 0.96553 0.97339 1.23199 0.95356 0.94347 0.94784 1.63044 1.44268 1.04495 1.12753 1.21582 0.96932 0.94616 0.91267 1.20685 0.95703 0.94246 0.99003 1.22976 0.88919 0.98950 0.95053 1.67785 1.38456 1.01297 1.11538 1.23225 0.94452 0.94338 0.97367 1.18854 0.95131 0.80235 1.03962 1.91524 1.93449 1.35657 1.90627 1.21826 1.01184 0.91718 0.97424 1.21217 0.78373 0.85832 0.83905 1.90620 1.58826 1.73057 1.23682 0.92693 0.97830 1.01031 0.93486 0.89100 0.88403 0.90070 0.88557 0.83911 0.86769 0.93440 0.93501 0.87782 0.90843 0.89603 0.87600 0.88873 0.81874 0.80219 0.81198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 2 C 0.00 0.04 5.46 84.66 0.46 0.51 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 8 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.03 1.38 5.30 29.85 0.16 1.54 16 10 C 0.14 6.22 5.88 86.38 0.51 6.73 16 11 N -0.62 -22.05 2.94 -817.77 -2.40 -24.45 16 12 C 0.09 2.11 6.99 86.94 0.61 2.72 16 13 C -0.15 -2.45 5.53 31.52 0.17 -2.27 16 14 C 0.08 1.96 0.99 3.27 0.00 1.96 16 15 C -0.12 -2.67 5.86 31.59 0.18 -2.49 16 16 C -0.13 -2.48 7.08 32.07 0.23 -2.25 16 17 C 0.05 0.78 5.67 86.76 0.49 1.27 16 18 N -0.52 -10.14 4.84 -846.31 -4.10 -14.24 16 19 C 0.08 0.98 3.58 85.56 0.31 1.28 16 20 C -0.09 -1.30 5.11 -19.78 -0.10 -1.40 16 21 C 0.10 1.76 10.86 84.69 0.92 2.68 16 22 N -0.48 -9.73 10.36 -195.67 -2.03 -11.76 16 23 C 0.06 1.05 11.17 84.73 0.95 2.00 16 24 C 0.04 0.58 7.35 22.47 0.17 0.75 16 25 F -0.13 -2.05 17.28 44.97 0.78 -1.28 16 26 C -0.09 -1.13 9.11 22.51 0.20 -0.92 16 27 C 0.52 19.66 6.97 87.62 0.61 20.27 16 28 O -0.58 -28.55 17.42 -3.02 -0.05 -28.60 16 29 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 30 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 31 H -0.03 -1.83 8.14 -2.39 -0.02 -1.84 16 32 H 0.05 2.23 7.93 -2.38 -0.02 2.21 16 33 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 34 H 0.10 1.61 6.75 -2.38 -0.02 1.60 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.10 1.56 7.84 -2.39 -0.02 1.54 16 37 H 0.14 1.11 4.85 -2.38 -0.01 1.09 16 38 H 0.11 1.65 7.81 -2.39 -0.02 1.63 16 39 H 0.05 1.41 7.79 -2.39 -0.02 1.39 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 0.74 7.09 -2.39 -0.02 0.72 16 44 H 0.11 1.17 4.99 -2.39 -0.01 1.16 16 45 H 0.09 0.51 6.75 -2.39 -0.02 0.49 16 46 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 47 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 48 H 0.17 1.09 7.59 -2.91 -0.02 1.07 16 Total: -1.00 -82.12 387.53 1.58 -80.53 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.98 Total: 9.05 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 6.10 Total: 1.17 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -8.25 Total: -107.71 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.78 Total: -1.28 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -82.12 1.58 -80.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272794611.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.377 kcal (2) G-P(sol) polarization free energy of solvation -82.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds