Wall clock time and date at job start Wed Apr 1 2020 04:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00420 * 2 1 4 4 H 1.48502 * 109.47227 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46886 * 300.00044 * 3 2 1 6 6 H 1.48499 * 109.47040 * 59.99727 * 3 2 1 7 7 C 1.37879 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00215 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47380 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47341 * 179.97438 * 10 9 7 12 12 C 1.46929 * 124.37789 * 89.99728 * 11 10 9 13 13 C 1.54799 * 105.54171 * 163.25156 * 12 11 10 14 14 C 1.53221 * 101.39099 * 24.18418 * 13 12 11 15 15 C 1.53943 * 111.55261 * 98.70415 * 14 13 12 16 16 C 1.54583 * 102.74590 * 154.05174 * 15 14 13 17 17 N 1.47555 * 107.41778 * 339.19409 * 16 15 14 18 18 C 1.46900 * 110.99796 * 236.73048 * 17 16 15 19 19 C 1.50705 * 109.46876 * 290.12702 * 18 17 16 20 20 C 1.38229 * 119.59164 * 94.72787 * 19 18 17 21 21 C 1.38594 * 119.19018 * 179.77302 * 20 19 18 22 22 C 1.38878 * 118.39930 * 0.48743 * 21 20 19 23 23 F 1.35098 * 120.44277 * 179.77419 * 22 21 20 24 24 C 1.38419 * 119.10910 * 359.75588 * 22 21 20 25 25 N 1.31850 * 119.59209 * 274.99678 * 19 18 17 26 26 C 1.48122 * 108.65004 * 359.04813 * 17 16 15 27 27 C 1.34889 * 124.37920 * 269.99924 * 11 10 9 28 28 O 1.21275 * 125.21649 * 1.27059 * 27 11 10 29 29 H 0.97006 * 119.99612 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47130 * 59.99340 * 9 7 2 31 31 H 1.08998 * 109.47031 * 300.00156 * 9 7 2 32 32 H 1.09002 * 109.47495 * 59.99604 * 10 9 7 33 33 H 1.09002 * 109.46757 * 299.99877 * 10 9 7 34 34 H 1.09002 * 110.23479 * 44.23533 * 12 11 10 35 35 H 1.08999 * 110.23678 * 282.26815 * 12 11 10 36 36 H 1.08993 * 111.03716 * 266.15582 * 13 12 11 37 37 H 1.08995 * 111.03954 * 142.20884 * 13 12 11 38 38 H 1.09000 * 110.71571 * 35.78406 * 15 14 13 39 39 H 1.09002 * 110.87067 * 272.39011 * 15 14 13 40 40 H 1.09002 * 109.87993 * 219.69231 * 16 15 14 41 41 H 1.08996 * 109.87926 * 98.68950 * 16 15 14 42 42 H 1.08998 * 109.47417 * 50.12114 * 18 17 16 43 43 H 1.09002 * 109.47366 * 170.12894 * 18 17 16 44 44 H 1.08004 * 120.40245 * 359.97438 * 20 19 18 45 45 H 1.07998 * 120.80012 * 180.22110 * 21 20 19 46 46 H 1.08001 * 119.63213 * 180.02562 * 24 22 21 47 47 H 1.09003 * 110.39580 * 141.38194 * 26 17 16 48 48 H 1.09005 * 110.39828 * 263.66959 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 0.0012 12 6 1.0973 -5.6496 -1.2112 13 6 0.7632 -7.0880 -0.7466 14 6 0.4342 -6.8595 0.7324 15 6 -1.0850 -6.7794 0.9679 16 6 -1.2256 -7.2245 2.4416 17 7 -0.0093 -7.9829 2.7918 18 6 -0.3484 -9.3296 3.2710 19 6 -1.0107 -9.2304 4.6211 20 6 -2.3902 -9.2035 4.7043 21 6 -2.9906 -9.1169 5.9504 22 6 -2.1758 -9.0498 7.0730 23 9 -2.7172 -8.9599 8.3075 24 6 -0.8015 -9.0768 6.9101 25 7 -0.2670 -9.1649 5.7079 26 6 0.8675 -8.0489 1.5998 27 6 1.1321 -5.5901 1.1147 28 8 1.3248 -5.2128 2.2511 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.8718 -3.6044 0.8905 33 1 2.8717 -3.6044 -0.8895 34 1 1.9108 -5.6672 -1.9364 35 1 0.2149 -5.1791 -1.6448 36 1 1.6252 -7.7455 -0.8587 37 1 -0.0999 -7.4819 -1.2831 38 1 -1.6145 -7.4644 0.3057 39 1 -1.4450 -5.7589 0.8371 40 1 -2.1040 -7.8599 2.5546 41 1 -1.3155 -6.3501 3.0859 42 1 -1.0302 -9.8052 2.5660 43 1 0.5608 -9.9249 3.3552 44 1 -2.9928 -9.2527 3.8093 45 1 -4.0662 -9.0976 6.0459 46 1 -0.1598 -9.0255 7.7773 47 1 1.9128 -7.9458 1.8910 48 1 0.7133 -8.9868 1.0661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272801608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:22 Heat of formation + Delta-G solvation = -31.548229 kcal Electronic energy + Delta-G solvation = -30301.054275 eV Core-core repulsion = 26077.379156 eV Total energy + Delta-G solvation = -4223.675119 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.26416 -41.05195 -40.35112 -37.88431 -35.92746 -34.25975 -32.97952 -32.81526 -31.56273 -30.09622 -29.21272 -27.99529 -26.21698 -25.05480 -24.27973 -23.36952 -22.63664 -21.91412 -20.92973 -20.31648 -18.57601 -17.94528 -17.57866 -16.72343 -16.46074 -16.24059 -16.09372 -15.73527 -15.56332 -15.23666 -14.60015 -14.46295 -14.34480 -14.30811 -13.82930 -13.62298 -13.47554 -13.31187 -13.17789 -12.91751 -12.65282 -12.52327 -12.39268 -12.26498 -12.06246 -11.89559 -11.66290 -11.29653 -11.13093 -10.97722 -10.92489 -10.73565 -10.63117 -10.25059 -9.97042 -9.84416 -9.83658 -9.27990 -9.18059 -9.00111 -8.36680 -8.36435 -7.95370 -6.01692 -4.04777 0.56297 0.78310 3.06030 3.20117 3.31238 3.38485 3.42404 3.58680 3.67625 3.87126 3.99610 4.25641 4.36807 4.41109 4.42199 4.46541 4.50133 4.55830 4.80439 4.94980 5.02389 5.05749 5.15179 5.22472 5.29127 5.34733 5.40087 5.47270 5.48910 5.50051 5.57084 5.62191 5.70369 5.74195 5.83468 5.89605 6.03597 6.10125 6.17363 6.27487 6.49478 6.80501 6.83800 6.90890 7.06909 7.54489 7.59713 7.69116 7.88460 7.98851 8.35477 8.78240 9.02416 9.59282 11.09802 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.002354 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.592437 B =11892.953739 C =13301.972656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.012 3.988 10 C 0.129 3.871 11 N -0.616 5.616 12 C 0.103 3.897 13 C -0.120 4.120 14 C -0.108 4.108 15 C -0.117 4.117 16 C 0.044 3.956 17 N -0.509 5.509 18 C 0.099 3.901 19 C 0.133 3.867 20 C -0.139 4.139 21 C -0.108 4.108 22 C 0.042 3.958 23 F -0.132 7.132 24 C 0.080 3.920 25 N -0.435 5.435 26 C 0.074 3.926 27 C 0.529 3.471 28 O -0.509 6.509 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.020 0.980 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.095 0.905 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.167 0.833 47 H 0.086 0.914 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 -25.382 3.238 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.026 4.026 10 C 0.009 3.991 11 N -0.350 5.350 12 C -0.020 4.020 13 C -0.158 4.158 14 C -0.112 4.112 15 C -0.156 4.156 16 C -0.083 4.083 17 N -0.233 5.233 18 C -0.029 4.029 19 C -0.006 4.006 20 C -0.159 4.159 21 C -0.134 4.134 22 C 0.020 3.980 23 F -0.111 7.111 24 C -0.079 4.079 25 N -0.144 5.144 26 C -0.053 4.053 27 C 0.314 3.686 28 O -0.383 6.383 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.160 0.840 45 H 0.165 0.835 46 H 0.185 0.815 47 H 0.104 0.896 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.860 -24.742 4.212 25.565 hybrid contribution -1.211 0.785 -0.368 1.490 sum -6.072 -23.957 3.843 25.012 Atomic orbital electron populations 1.69985 1.06107 1.26538 1.50574 1.25003 0.94853 0.99317 0.95140 0.86503 0.80120 0.83610 0.77576 1.19647 1.21013 1.20946 1.21135 0.93082 0.90711 1.51026 0.92438 1.19402 0.94456 0.91118 0.97616 1.21771 0.94960 0.81055 1.01274 1.48689 1.56686 1.23613 1.06057 1.22054 1.00619 0.90978 0.88387 1.22484 1.02685 0.97095 0.93504 1.21587 0.97172 0.96077 0.96394 1.22588 0.92952 1.03264 0.96785 1.22970 0.91068 0.98749 0.95552 1.63590 1.14867 1.12764 1.32083 1.21114 1.00206 0.91598 0.90025 1.21179 0.90024 0.94785 0.94566 1.21937 0.95510 1.00531 0.97912 1.21629 1.01245 0.99098 0.91467 1.18855 0.93416 1.05057 0.80653 1.91524 1.86310 1.93621 1.39605 1.22961 0.90944 0.97534 0.96468 1.67558 1.39683 1.09567 0.97551 1.22685 0.98641 0.95339 0.88662 1.19864 0.78925 0.84913 0.84907 1.90735 1.55862 1.71168 1.20502 0.93027 0.96583 0.96133 0.91210 0.91757 0.90677 0.91202 0.89927 0.89366 0.90368 0.89821 0.92698 0.89971 0.92780 0.88702 0.83966 0.83539 0.81538 0.89566 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.32 5.30 -27.89 -0.15 0.17 16 10 C 0.13 2.77 5.88 -4.04 -0.02 2.75 16 11 N -0.62 -11.13 2.95 -172.56 -0.51 -11.64 16 12 C 0.10 1.34 7.37 -2.86 -0.02 1.32 16 13 C -0.12 -1.15 6.26 -25.67 -0.16 -1.31 16 14 C -0.11 -1.37 0.68 -155.24 -0.10 -1.48 16 15 C -0.12 -1.35 5.96 -25.41 -0.15 -1.50 16 16 C 0.04 0.53 6.30 -2.63 -0.02 0.51 16 17 N -0.51 -6.30 5.15 -233.13 -1.20 -7.50 16 18 C 0.10 0.94 4.91 -4.97 -0.02 0.91 16 19 C 0.13 1.39 5.93 -82.59 -0.49 0.90 16 20 C -0.14 -1.15 8.78 -39.45 -0.35 -1.50 16 21 C -0.11 -0.89 10.16 -39.21 -0.40 -1.29 16 22 C 0.04 0.41 7.35 -39.28 -0.29 0.12 16 23 F -0.13 -1.32 17.28 2.25 0.04 -1.28 16 24 C 0.08 0.83 11.17 -17.47 -0.20 0.63 16 25 N -0.44 -5.26 10.27 -9.42 -0.10 -5.36 16 26 C 0.07 0.85 5.54 -2.92 -0.02 0.83 16 27 C 0.53 9.77 6.73 -11.36 -0.08 9.70 16 28 O -0.51 -11.79 17.51 5.56 0.10 -11.69 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.59 7.96 -51.93 -0.41 1.17 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.67 7.97 -51.93 -0.41 0.25 16 37 H 0.09 0.64 7.62 -51.93 -0.40 0.24 16 38 H 0.08 0.66 7.75 -51.93 -0.40 0.25 16 39 H 0.08 1.14 8.01 -51.93 -0.42 0.73 16 40 H 0.05 0.49 5.78 -51.93 -0.30 0.19 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.37 7.86 -51.93 -0.41 -0.04 16 43 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 44 H 0.14 0.81 7.27 -52.48 -0.38 0.43 16 45 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 46 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 47 H 0.09 1.12 8.01 -51.93 -0.42 0.70 16 48 H 0.06 0.46 7.70 -51.93 -0.40 0.06 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -35.95 395.21 -10.16 -46.12 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -7.29 Total: -2.17 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.87 Total: -2.86 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -1.07 Total: -50.95 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.10 Total: -11.69 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.95 -10.16 -46.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272801608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.567 kcal (2) G-P(sol) polarization free energy of solvation -35.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds