Wall clock time and date at job start Wed Apr 1 2020 04:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00420 * 2 1 4 4 H 1.48502 * 109.47227 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46886 * 300.00044 * 3 2 1 6 6 H 1.48499 * 109.47040 * 59.99727 * 3 2 1 7 7 C 1.37879 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00215 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47380 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47341 * 179.97438 * 10 9 7 12 12 C 1.46929 * 124.37789 * 89.99728 * 11 10 9 13 13 C 1.54799 * 105.54171 * 163.25156 * 12 11 10 14 14 C 1.53221 * 101.39099 * 24.18418 * 13 12 11 15 15 C 1.53943 * 111.55261 * 98.70415 * 14 13 12 16 16 C 1.54583 * 102.74590 * 154.05174 * 15 14 13 17 17 N 1.47555 * 107.41778 * 339.19409 * 16 15 14 18 18 C 1.46900 * 110.99796 * 236.73048 * 17 16 15 19 19 C 1.50705 * 109.46876 * 290.12702 * 18 17 16 20 20 C 1.38229 * 119.59164 * 94.72787 * 19 18 17 21 21 C 1.38594 * 119.19018 * 179.77302 * 20 19 18 22 22 C 1.38878 * 118.39930 * 0.48743 * 21 20 19 23 23 F 1.35098 * 120.44277 * 179.77419 * 22 21 20 24 24 C 1.38419 * 119.10910 * 359.75588 * 22 21 20 25 25 N 1.31850 * 119.59209 * 274.99678 * 19 18 17 26 26 C 1.48122 * 108.65004 * 359.04813 * 17 16 15 27 27 C 1.34889 * 124.37920 * 269.99924 * 11 10 9 28 28 O 1.21275 * 125.21649 * 1.27059 * 27 11 10 29 29 H 0.97006 * 119.99612 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47130 * 59.99340 * 9 7 2 31 31 H 1.08998 * 109.47031 * 300.00156 * 9 7 2 32 32 H 1.09002 * 109.47495 * 59.99604 * 10 9 7 33 33 H 1.09002 * 109.46757 * 299.99877 * 10 9 7 34 34 H 1.09002 * 110.23479 * 44.23533 * 12 11 10 35 35 H 1.08999 * 110.23678 * 282.26815 * 12 11 10 36 36 H 1.08993 * 111.03716 * 266.15582 * 13 12 11 37 37 H 1.08995 * 111.03954 * 142.20884 * 13 12 11 38 38 H 1.09000 * 110.71571 * 35.78406 * 15 14 13 39 39 H 1.09002 * 110.87067 * 272.39011 * 15 14 13 40 40 H 1.09002 * 109.87993 * 219.69231 * 16 15 14 41 41 H 1.08996 * 109.87926 * 98.68950 * 16 15 14 42 42 H 1.08998 * 109.47417 * 50.12114 * 18 17 16 43 43 H 1.09002 * 109.47366 * 170.12894 * 18 17 16 44 44 H 1.08004 * 120.40245 * 359.97438 * 20 19 18 45 45 H 1.07998 * 120.80012 * 180.22110 * 21 20 19 46 46 H 1.08001 * 119.63213 * 180.02562 * 24 22 21 47 47 H 1.09003 * 110.39580 * 141.38194 * 26 17 16 48 48 H 1.09005 * 110.39828 * 263.66959 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 0.0012 12 6 1.0973 -5.6496 -1.2112 13 6 0.7632 -7.0880 -0.7466 14 6 0.4342 -6.8595 0.7324 15 6 -1.0850 -6.7794 0.9679 16 6 -1.2256 -7.2245 2.4416 17 7 -0.0093 -7.9829 2.7918 18 6 -0.3484 -9.3296 3.2710 19 6 -1.0107 -9.2304 4.6211 20 6 -2.3902 -9.2035 4.7043 21 6 -2.9906 -9.1169 5.9504 22 6 -2.1758 -9.0498 7.0730 23 9 -2.7172 -8.9599 8.3075 24 6 -0.8015 -9.0768 6.9101 25 7 -0.2670 -9.1649 5.7079 26 6 0.8675 -8.0489 1.5998 27 6 1.1321 -5.5901 1.1147 28 8 1.3248 -5.2128 2.2511 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.8718 -3.6044 0.8905 33 1 2.8717 -3.6044 -0.8895 34 1 1.9108 -5.6672 -1.9364 35 1 0.2149 -5.1791 -1.6448 36 1 1.6252 -7.7455 -0.8587 37 1 -0.0999 -7.4819 -1.2831 38 1 -1.6145 -7.4644 0.3057 39 1 -1.4450 -5.7589 0.8371 40 1 -2.1040 -7.8599 2.5546 41 1 -1.3155 -6.3501 3.0859 42 1 -1.0302 -9.8052 2.5660 43 1 0.5608 -9.9249 3.3552 44 1 -2.9928 -9.2527 3.8093 45 1 -4.0662 -9.0976 6.0459 46 1 -0.1598 -9.0255 7.7773 47 1 1.9128 -7.9458 1.8910 48 1 0.7133 -8.9868 1.0661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272801608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:21 Heat of formation + Delta-G solvation = -56.951147 kcal Electronic energy + Delta-G solvation = -30302.155828 eV Core-core repulsion = 26077.379156 eV Total energy + Delta-G solvation = -4224.776672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.02345 -42.13240 -41.15228 -38.97134 -37.40355 -35.87153 -34.53237 -33.52326 -32.84853 -31.16579 -30.55462 -29.09097 -27.21376 -26.78988 -24.98370 -24.49961 -23.55840 -23.40081 -21.83703 -21.64552 -19.88941 -18.69441 -18.66990 -18.31841 -17.52297 -17.15161 -17.03497 -16.91348 -16.73543 -16.47596 -16.35996 -15.66638 -15.09725 -15.06390 -14.86450 -14.81103 -14.49501 -14.41650 -14.30124 -14.16925 -14.02701 -13.79530 -13.53480 -13.33428 -13.17937 -13.03042 -12.89052 -12.82880 -12.53109 -12.48718 -12.10448 -11.96861 -11.90295 -11.82447 -11.51745 -11.40039 -10.94262 -10.64162 -10.57999 -10.49779 -9.91477 -9.50768 -9.15203 -8.26271 -6.39141 -0.15657 0.10489 1.36456 1.38533 1.51546 1.66712 2.18857 2.40427 2.46043 2.97747 3.07109 3.08252 3.28993 3.34593 3.52212 3.57100 3.69809 3.77655 3.86614 3.91688 4.08280 4.23173 4.30475 4.33308 4.40468 4.42374 4.53975 4.57996 4.62728 4.67653 4.74531 4.79058 4.81315 4.84731 4.85803 4.87789 4.93829 4.98551 5.07007 5.17718 5.25708 5.32661 5.45189 5.59235 5.60900 5.82621 5.99920 6.13988 6.16037 6.37006 6.76493 6.87544 7.30133 7.34401 8.86151 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.002354 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.592437 B =11892.953739 C =13301.972656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.026 3.974 10 C 0.143 3.857 11 N -0.626 5.626 12 C 0.091 3.909 13 C -0.099 4.099 14 C -0.103 4.103 15 C -0.112 4.112 16 C 0.049 3.951 17 N -0.544 5.544 18 C 0.102 3.898 19 C 0.114 3.886 20 C -0.132 4.132 21 C -0.106 4.106 22 C 0.030 3.970 23 F -0.137 7.137 24 C 0.063 3.937 25 N -0.472 5.472 26 C 0.081 3.919 27 C 0.510 3.490 28 O -0.574 6.574 29 H 0.264 0.736 30 H 0.001 0.999 31 H -0.032 1.032 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.030 0.970 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.177 0.823 45 H 0.174 0.826 46 H 0.175 0.825 47 H 0.060 0.940 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 -27.731 0.584 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.012 4.012 10 C 0.021 3.979 11 N -0.359 5.359 12 C -0.031 4.031 13 C -0.136 4.136 14 C -0.107 4.107 15 C -0.151 4.151 16 C -0.078 4.078 17 N -0.269 5.269 18 C -0.025 4.025 19 C -0.024 4.024 20 C -0.152 4.152 21 C -0.132 4.132 22 C 0.008 3.992 23 F -0.116 7.116 24 C -0.095 4.095 25 N -0.180 5.180 26 C -0.046 4.046 27 C 0.299 3.701 28 O -0.453 6.453 29 H 0.073 0.927 30 H 0.019 0.981 31 H -0.013 1.013 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.049 0.951 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.194 0.806 45 H 0.191 0.809 46 H 0.192 0.808 47 H 0.079 0.921 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.515 -27.131 1.517 27.727 hybrid contribution -1.032 1.552 0.508 1.932 sum -6.547 -25.579 2.025 26.481 Atomic orbital electron populations 1.70124 1.07980 1.27854 1.51273 1.26034 0.95818 1.03630 0.94360 0.85317 0.79125 0.78245 0.77865 1.18279 1.19621 1.20804 1.21585 0.93726 0.91867 1.51150 0.91626 1.19188 0.94527 0.93250 0.94222 1.21305 0.93827 0.81445 1.01326 1.48845 1.56071 1.22537 1.08407 1.22451 1.01248 0.92671 0.86710 1.22594 1.05467 0.94949 0.90631 1.21594 0.97194 0.93058 0.98888 1.22656 0.92295 1.02591 0.97541 1.22816 0.92511 0.97684 0.94827 1.63345 1.15410 1.14891 1.33275 1.21203 1.01139 0.90126 0.90081 1.21582 0.91191 0.94988 0.94639 1.22271 0.94874 0.98974 0.99089 1.21998 1.02520 0.97750 0.90930 1.18997 0.93498 1.05642 0.81052 1.91507 1.86282 1.93751 1.40027 1.23137 0.91746 0.98095 0.96569 1.67530 1.41072 1.10936 0.98507 1.22665 0.97100 0.96460 0.88401 1.21094 0.78196 0.86858 0.83984 1.90682 1.58250 1.73220 1.23112 0.92679 0.98113 1.01315 0.93521 0.89132 0.88427 0.91611 0.87325 0.85201 0.85253 0.93205 0.89085 0.95124 0.88812 0.88864 0.80577 0.80858 0.80820 0.92125 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.60 13.29 21.45 0.28 -58.31 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.54 -32.19 9.11 25.60 0.23 -31.96 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.03 1.47 5.30 29.85 0.16 1.63 16 10 C 0.14 6.38 5.88 86.38 0.51 6.89 16 11 N -0.63 -23.12 2.95 -818.19 -2.41 -25.53 16 12 C 0.09 2.16 7.37 86.91 0.64 2.80 16 13 C -0.10 -1.46 6.26 31.28 0.20 -1.26 16 14 C -0.10 -2.44 0.68 -52.66 -0.04 -2.47 16 15 C -0.11 -2.35 5.96 31.45 0.19 -2.16 16 16 C 0.05 1.12 6.30 86.72 0.55 1.67 16 17 N -0.54 -12.84 5.15 -891.47 -4.60 -17.44 16 18 C 0.10 1.67 4.91 85.56 0.42 2.09 16 19 C 0.11 2.25 5.93 42.56 0.25 2.51 16 20 C -0.13 -1.87 8.78 22.35 0.20 -1.67 16 21 C -0.11 -1.57 10.16 22.51 0.23 -1.34 16 22 C 0.03 0.58 7.35 22.47 0.17 0.74 16 23 F -0.14 -2.77 17.28 44.97 0.78 -1.99 16 24 C 0.06 1.36 11.17 84.73 0.95 2.31 16 25 N -0.47 -11.66 10.27 -183.71 -1.89 -13.55 16 26 C 0.08 1.65 5.54 86.22 0.48 2.13 16 27 C 0.51 19.67 6.73 87.37 0.59 20.26 16 28 O -0.57 -28.89 17.51 -3.01 -0.05 -28.95 16 29 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 30 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 31 H -0.03 -2.07 8.14 -2.39 -0.02 -2.09 16 32 H 0.05 2.26 7.96 -2.39 -0.02 2.25 16 33 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 1.13 7.97 -2.39 -0.02 1.11 16 37 H 0.13 0.96 7.62 -2.39 -0.02 0.94 16 38 H 0.13 1.42 7.75 -2.39 -0.02 1.40 16 39 H 0.05 1.38 8.01 -2.39 -0.02 1.36 16 40 H 0.09 1.33 5.78 -2.39 -0.01 1.32 16 41 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 0.78 7.86 -2.39 -0.02 0.76 16 43 H 0.09 1.53 8.07 -2.39 -0.02 1.51 16 44 H 0.18 1.19 7.27 -2.91 -0.02 1.16 16 45 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 46 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 47 H 0.06 1.54 8.01 -2.39 -0.02 1.52 16 48 H 0.11 1.14 7.70 -2.38 -0.02 1.12 16 Total: -1.00 -88.17 395.21 1.27 -86.90 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.96 Total: 8.80 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 6.17 Total: 2.59 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -8.61 Total: -114.83 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.05 Total: -28.95 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -1.99 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -88.17 1.27 -86.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272801608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.945 kcal (2) G-P(sol) polarization free energy of solvation -88.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds