Wall clock time and date at job start Wed Apr 1 2020 04:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00342 * 2 1 4 4 H 1.48495 * 109.47136 * 239.99704 * 3 2 1 5 5 H 1.48498 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47325 * 119.99384 * 3 2 1 7 7 C 1.37881 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00373 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99542 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46901 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46944 * 179.97438 * 10 9 7 12 12 C 1.46853 * 124.36870 * 269.72382 * 11 10 9 13 13 C 1.54651 * 105.50226 * 163.39668 * 12 11 10 14 14 C 1.53853 * 101.58720 * 24.75015 * 13 12 11 15 15 C 1.53245 * 110.60888 * 96.01099 * 14 13 12 16 16 C 1.54793 * 104.81352 * 122.17577 * 15 14 13 17 17 C 1.55005 * 102.94349 * 21.89571 * 16 15 14 18 18 N 1.47081 * 110.71491 * 215.60609 * 14 13 12 19 19 C 1.46900 * 110.99951 * 93.71004 * 18 14 13 20 20 C 1.50702 * 109.46872 * 177.16573 * 19 18 14 21 21 C 1.38755 * 120.38837 * 269.72596 * 20 19 18 22 22 C 1.38502 * 118.44506 * 179.78131 * 21 20 19 23 23 C 1.38562 * 119.14246 * 0.47377 * 22 21 20 24 24 F 1.35099 * 119.64613 * 179.74692 * 23 22 21 25 25 N 1.32028 * 120.69754 * 359.76751 * 23 22 21 26 26 C 1.31934 * 121.68789 * 359.97438 * 25 23 22 27 27 C 1.34663 * 124.36734 * 90.02606 * 11 10 9 28 28 O 1.21285 * 125.08025 * 0.56149 * 27 11 10 29 29 H 0.97006 * 119.99524 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47674 * 60.00115 * 9 7 2 31 31 H 1.09003 * 109.47435 * 299.99479 * 9 7 2 32 32 H 1.09003 * 109.46762 * 60.00256 * 10 9 7 33 33 H 1.08995 * 109.47129 * 299.99926 * 10 9 7 34 34 H 1.08997 * 110.24171 * 282.40853 * 12 11 10 35 35 H 1.09001 * 110.23967 * 44.39534 * 12 11 10 36 36 H 1.08991 * 111.00419 * 266.66923 * 13 12 11 37 37 H 1.09010 * 111.03264 * 142.83762 * 13 12 11 38 38 H 1.08995 * 110.37443 * 241.01590 * 15 14 13 39 39 H 1.09004 * 110.36632 * 3.34378 * 15 14 13 40 40 H 1.09002 * 110.72548 * 140.26121 * 16 15 14 41 41 H 1.09001 * 110.72349 * 263.35842 * 16 15 14 42 42 H 1.08993 * 110.64390 * 81.50817 * 17 16 15 43 43 H 1.08998 * 110.64258 * 204.41870 * 17 16 15 44 44 H 1.08990 * 109.47536 * 297.17159 * 19 18 14 45 45 H 1.09004 * 109.46566 * 57.17313 * 19 18 14 46 46 H 1.08001 * 120.77263 * 0.02592 * 21 20 19 47 47 H 1.08006 * 120.42376 * 180.24080 * 22 21 20 48 48 H 1.08001 * 119.59953 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5125 -4.9308 0.0012 12 6 1.1035 -5.6513 1.2136 13 6 0.0265 -6.6603 0.7514 14 6 0.3913 -6.8437 -0.7320 15 6 1.2692 -8.0854 -0.9220 16 6 0.4890 -8.9724 -1.9223 17 6 -0.4397 -7.9569 -2.6357 18 7 -0.8200 -7.0164 -1.5482 19 6 -1.2722 -5.7313 -2.0976 20 6 -2.4712 -5.9572 -2.9822 21 6 -2.3068 -6.2052 -4.3375 22 6 -3.4362 -6.4117 -5.1121 23 6 -4.6847 -6.3542 -4.5137 24 9 -5.7934 -6.5490 -5.2607 25 7 -4.8021 -6.1108 -3.2214 26 6 -3.7467 -5.9147 -2.4544 27 6 1.1325 -5.5897 -1.1101 28 8 1.3539 -5.2264 -2.2459 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.8718 -3.6044 0.8906 33 1 2.8718 -3.6044 -0.8894 34 1 1.9546 -6.1789 1.6440 35 1 0.6823 -4.9570 1.9408 36 1 -0.9737 -6.2407 0.8587 37 1 0.1134 -7.6015 1.2944 38 1 2.2372 -7.8057 -1.3377 39 1 1.3990 -8.6069 0.0264 40 1 1.1687 -9.4400 -2.6347 41 1 -0.0938 -9.7276 -1.3949 42 1 0.0985 -7.4333 -3.4258 43 1 -1.3196 -8.4582 -3.0388 44 1 -1.5440 -5.0625 -1.2811 45 1 -0.4687 -5.2833 -2.6822 46 1 -1.3210 -6.2403 -4.7772 47 1 -3.3451 -6.6111 -6.1697 48 1 -3.8818 -5.7176 -1.4011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273241426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:36 Heat of formation + Delta-G solvation = -24.155947 kcal Electronic energy + Delta-G solvation = -31379.207316 eV Core-core repulsion = 27155.852751 eV Total energy + Delta-G solvation = -4223.354566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.10019 -41.41915 -40.11906 -37.62814 -36.28220 -34.08298 -33.50045 -32.37878 -31.87730 -30.36933 -29.13651 -27.79509 -25.87324 -25.10421 -24.12235 -23.49475 -22.33746 -21.91672 -21.06572 -20.33853 -18.71974 -18.15272 -17.39327 -16.86827 -16.52424 -16.18320 -16.02892 -15.44761 -15.31962 -15.15622 -14.71916 -14.61554 -14.46298 -14.23513 -13.87344 -13.71599 -13.34824 -13.22545 -12.98696 -12.91927 -12.78858 -12.37400 -12.20977 -12.11795 -11.96134 -11.79546 -11.37943 -11.32082 -11.20014 -11.09862 -10.96632 -10.77730 -10.63515 -10.12896 -10.11407 -9.94954 -9.86937 -9.75412 -9.29907 -9.03599 -8.42968 -8.36747 -8.01232 -6.07825 -4.11819 0.76506 0.98141 2.75169 3.29026 3.33427 3.34698 3.38210 3.42422 3.46910 3.89606 4.26175 4.33531 4.38950 4.40800 4.53096 4.64864 4.73162 4.77530 4.81967 4.98504 5.05452 5.13199 5.20466 5.28486 5.40666 5.49246 5.54928 5.62243 5.64193 5.69525 5.71480 5.72580 5.80104 5.87148 5.89957 5.93364 6.02636 6.04533 6.14408 6.37072 6.48593 6.70703 6.72979 6.78826 6.87381 7.38727 7.51834 7.58067 7.74609 7.90179 8.26093 8.48871 8.94197 9.52751 11.03310 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009119 B = 0.003427 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.845097 B = 8168.049820 C =10391.039367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.015 3.985 10 C 0.125 3.875 11 N -0.604 5.604 12 C 0.097 3.903 13 C -0.112 4.112 14 C 0.060 3.940 15 C -0.107 4.107 16 C -0.120 4.120 17 C 0.030 3.970 18 N -0.478 5.478 19 C 0.055 3.945 20 C -0.127 4.127 21 C -0.040 4.040 22 C -0.194 4.194 23 C 0.299 3.701 24 F -0.117 7.117 25 N -0.514 5.514 26 C 0.155 3.845 27 C 0.500 3.500 28 O -0.530 6.530 29 H 0.262 0.738 30 H 0.019 0.981 31 H 0.017 0.983 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.281 -20.071 -2.665 20.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.023 4.023 10 C 0.005 3.995 11 N -0.336 5.336 12 C -0.027 4.027 13 C -0.150 4.150 14 C -0.034 4.034 15 C -0.146 4.146 16 C -0.158 4.158 17 C -0.098 4.098 18 N -0.202 5.202 19 C -0.072 4.072 20 C -0.129 4.129 21 C -0.066 4.066 22 C -0.215 4.215 23 C 0.145 3.855 24 F -0.096 7.096 25 N -0.228 5.228 26 C -0.002 4.002 27 C 0.286 3.714 28 O -0.409 6.409 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.162 0.838 47 H 0.164 0.836 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.582 -19.839 -2.603 20.327 hybrid contribution 1.554 1.442 -0.912 2.308 sum -2.028 -18.397 -3.515 18.839 Atomic orbital electron populations 1.69953 1.06087 1.26898 1.50043 1.24983 0.94845 0.99277 0.94987 0.86624 0.79585 0.82932 0.78681 1.20155 1.21202 1.20150 1.21029 0.92991 0.90675 1.51739 0.92565 1.19372 0.94324 0.90954 0.97642 1.21853 0.95168 0.80973 1.01459 1.48655 1.55622 1.23028 1.06321 1.22172 0.97268 0.94685 0.88561 1.22618 0.99894 0.99852 0.92632 1.22088 0.90712 0.94593 0.95981 1.22261 0.98032 0.93504 1.00763 1.22504 0.97871 0.97498 0.97905 1.23360 0.98628 0.93940 0.93844 1.65072 1.26464 1.10131 1.18487 1.21741 0.95233 0.91734 0.98519 1.20800 0.96449 1.01005 0.94683 1.21503 0.99026 0.93242 0.92874 1.21782 0.91333 1.06049 1.02320 1.18181 0.82142 0.98016 0.87184 1.91608 1.52110 1.91996 1.73903 1.67049 1.36243 1.14882 1.04611 1.22472 0.85939 0.92471 0.99271 1.21001 0.79616 0.85684 0.85111 1.90621 1.57398 1.72050 1.20782 0.92812 0.96252 0.96432 0.91509 0.91172 0.91377 0.89838 0.89201 0.89101 0.91010 0.89887 0.90877 0.90523 0.92621 0.90070 0.89096 0.88652 0.83805 0.83610 0.81425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.01 0.38 5.30 -27.88 -0.15 0.23 16 10 C 0.13 2.52 5.88 -4.04 -0.02 2.49 16 11 N -0.60 -10.10 2.94 -172.49 -0.51 -10.61 16 12 C 0.10 1.19 7.36 -2.98 -0.02 1.16 16 13 C -0.11 -1.17 6.39 -25.42 -0.16 -1.33 16 14 C 0.06 0.73 0.76 -132.18 -0.10 0.63 16 15 C -0.11 -1.07 6.24 -25.66 -0.16 -1.23 16 16 C -0.12 -1.05 7.07 -24.73 -0.17 -1.22 16 17 C 0.03 0.32 5.13 -1.75 -0.01 0.31 16 18 N -0.48 -5.77 4.98 -218.20 -1.09 -6.85 16 19 C 0.06 0.77 4.19 -4.97 -0.02 0.75 16 20 C -0.13 -1.59 4.84 -104.48 -0.51 -2.10 16 21 C -0.04 -0.45 8.69 -39.29 -0.34 -0.79 16 22 C -0.19 -2.08 10.09 -39.36 -0.40 -2.48 16 23 C 0.30 3.88 8.41 -17.35 -0.15 3.73 16 24 F -0.12 -1.52 17.29 2.25 0.04 -1.48 16 25 N -0.51 -7.26 10.37 -13.59 -0.14 -7.40 16 26 C 0.16 1.99 10.86 -17.56 -0.19 1.80 16 27 C 0.50 8.36 5.46 -11.13 -0.06 8.30 16 28 O -0.53 -10.68 15.08 5.55 0.08 -10.60 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.49 7.93 -51.93 -0.41 1.08 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 37 H 0.09 0.70 7.41 -51.92 -0.38 0.32 16 38 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 39 H 0.08 0.65 7.29 -51.93 -0.38 0.27 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.66 7.58 -51.93 -0.39 0.26 16 43 H 0.08 0.80 7.79 -51.93 -0.40 0.40 16 44 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 45 H 0.10 1.62 4.98 -51.93 -0.26 1.36 16 46 H 0.14 1.43 7.68 -52.49 -0.40 1.03 16 47 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 48 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -32.64 389.79 -10.12 -42.76 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.22 Total: 0.58 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.87 Total: -2.94 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -1.00 Total: -50.52 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.64 -10.12 -42.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273241426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.606 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds