Wall clock time and date at job start Wed Apr 1 2020 04:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00342 * 2 1 4 4 H 1.48495 * 109.47136 * 239.99704 * 3 2 1 5 5 H 1.48498 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47325 * 119.99384 * 3 2 1 7 7 C 1.37881 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00373 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99542 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46901 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46944 * 179.97438 * 10 9 7 12 12 C 1.46853 * 124.36870 * 269.72382 * 11 10 9 13 13 C 1.54651 * 105.50226 * 163.39668 * 12 11 10 14 14 C 1.53853 * 101.58720 * 24.75015 * 13 12 11 15 15 C 1.53245 * 110.60888 * 96.01099 * 14 13 12 16 16 C 1.54793 * 104.81352 * 122.17577 * 15 14 13 17 17 C 1.55005 * 102.94349 * 21.89571 * 16 15 14 18 18 N 1.47081 * 110.71491 * 215.60609 * 14 13 12 19 19 C 1.46900 * 110.99951 * 93.71004 * 18 14 13 20 20 C 1.50702 * 109.46872 * 177.16573 * 19 18 14 21 21 C 1.38755 * 120.38837 * 269.72596 * 20 19 18 22 22 C 1.38502 * 118.44506 * 179.78131 * 21 20 19 23 23 C 1.38562 * 119.14246 * 0.47377 * 22 21 20 24 24 F 1.35099 * 119.64613 * 179.74692 * 23 22 21 25 25 N 1.32028 * 120.69754 * 359.76751 * 23 22 21 26 26 C 1.31934 * 121.68789 * 359.97438 * 25 23 22 27 27 C 1.34663 * 124.36734 * 90.02606 * 11 10 9 28 28 O 1.21285 * 125.08025 * 0.56149 * 27 11 10 29 29 H 0.97006 * 119.99524 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47674 * 60.00115 * 9 7 2 31 31 H 1.09003 * 109.47435 * 299.99479 * 9 7 2 32 32 H 1.09003 * 109.46762 * 60.00256 * 10 9 7 33 33 H 1.08995 * 109.47129 * 299.99926 * 10 9 7 34 34 H 1.08997 * 110.24171 * 282.40853 * 12 11 10 35 35 H 1.09001 * 110.23967 * 44.39534 * 12 11 10 36 36 H 1.08991 * 111.00419 * 266.66923 * 13 12 11 37 37 H 1.09010 * 111.03264 * 142.83762 * 13 12 11 38 38 H 1.08995 * 110.37443 * 241.01590 * 15 14 13 39 39 H 1.09004 * 110.36632 * 3.34378 * 15 14 13 40 40 H 1.09002 * 110.72548 * 140.26121 * 16 15 14 41 41 H 1.09001 * 110.72349 * 263.35842 * 16 15 14 42 42 H 1.08993 * 110.64390 * 81.50817 * 17 16 15 43 43 H 1.08998 * 110.64258 * 204.41870 * 17 16 15 44 44 H 1.08990 * 109.47536 * 297.17159 * 19 18 14 45 45 H 1.09004 * 109.46566 * 57.17313 * 19 18 14 46 46 H 1.08001 * 120.77263 * 0.02592 * 21 20 19 47 47 H 1.08006 * 120.42376 * 180.24080 * 22 21 20 48 48 H 1.08001 * 119.59953 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5125 -4.9308 0.0012 12 6 1.1035 -5.6513 1.2136 13 6 0.0265 -6.6603 0.7514 14 6 0.3913 -6.8437 -0.7320 15 6 1.2692 -8.0854 -0.9220 16 6 0.4890 -8.9724 -1.9223 17 6 -0.4397 -7.9569 -2.6357 18 7 -0.8200 -7.0164 -1.5482 19 6 -1.2722 -5.7313 -2.0976 20 6 -2.4712 -5.9572 -2.9822 21 6 -2.3068 -6.2052 -4.3375 22 6 -3.4362 -6.4117 -5.1121 23 6 -4.6847 -6.3542 -4.5137 24 9 -5.7934 -6.5490 -5.2607 25 7 -4.8021 -6.1108 -3.2214 26 6 -3.7467 -5.9147 -2.4544 27 6 1.1325 -5.5897 -1.1101 28 8 1.3539 -5.2264 -2.2459 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.8718 -3.6044 0.8906 33 1 2.8718 -3.6044 -0.8894 34 1 1.9546 -6.1789 1.6440 35 1 0.6823 -4.9570 1.9408 36 1 -0.9737 -6.2407 0.8587 37 1 0.1134 -7.6015 1.2944 38 1 2.2372 -7.8057 -1.3377 39 1 1.3990 -8.6069 0.0264 40 1 1.1687 -9.4400 -2.6347 41 1 -0.0938 -9.7276 -1.3949 42 1 0.0985 -7.4333 -3.4258 43 1 -1.3196 -8.4582 -3.0388 44 1 -1.5440 -5.0625 -1.2811 45 1 -0.4687 -5.2833 -2.6822 46 1 -1.3210 -6.2403 -4.7772 47 1 -3.3451 -6.6111 -6.1697 48 1 -3.8818 -5.7176 -1.4011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273241426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:35 Heat of formation + Delta-G solvation = -45.467407 kcal Electronic energy + Delta-G solvation = -31380.131451 eV Core-core repulsion = 27155.852751 eV Total energy + Delta-G solvation = -4224.278700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.10505 -42.51790 -41.14106 -38.75594 -37.61668 -35.68623 -34.84345 -33.44107 -33.32846 -31.32382 -30.71195 -28.81067 -27.02029 -26.79795 -25.10601 -24.57352 -23.55594 -23.27510 -22.02472 -21.60115 -19.96833 -19.13911 -18.71856 -18.39246 -17.59673 -17.48187 -17.13603 -16.81173 -16.60427 -16.24795 -16.06823 -15.71964 -15.58732 -15.39283 -15.02558 -14.79719 -14.61012 -14.33361 -14.32226 -14.17585 -13.91741 -13.84913 -13.59651 -13.20087 -13.00266 -12.96197 -12.84894 -12.71662 -12.53761 -12.25320 -12.08683 -12.05829 -11.93200 -11.82749 -11.49079 -11.41885 -11.08324 -11.06171 -10.78390 -10.61063 -10.04155 -9.65224 -9.28127 -8.25164 -6.38055 -0.22697 0.02095 1.37704 1.41171 1.47024 1.49690 2.11507 2.38461 2.39799 2.48642 2.88269 3.08552 3.28487 3.40020 3.46629 3.62220 3.67757 3.76040 3.83337 3.94863 4.10119 4.21270 4.23762 4.29695 4.31130 4.51038 4.56546 4.58312 4.65729 4.71240 4.72119 4.78481 4.79953 4.84448 4.88674 4.97999 5.07390 5.09401 5.12017 5.20460 5.27952 5.31883 5.44738 5.51510 5.57471 5.72976 5.79545 5.80890 6.13416 6.27401 6.51699 6.77023 7.15779 7.32043 8.86196 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009119 B = 0.003427 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.845097 B = 8168.049820 C =10391.039367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.028 3.972 10 C 0.141 3.859 11 N -0.614 5.614 12 C 0.091 3.909 13 C -0.102 4.102 14 C 0.063 3.937 15 C -0.104 4.104 16 C -0.111 4.111 17 C 0.026 3.974 18 N -0.470 5.470 19 C 0.068 3.932 20 C -0.132 4.132 21 C -0.040 4.040 22 C -0.177 4.177 23 C 0.284 3.716 24 F -0.119 7.119 25 N -0.537 5.537 26 C 0.149 3.851 27 C 0.488 3.512 28 O -0.575 6.575 29 H 0.264 0.736 30 H -0.027 1.027 31 H 0.000 1.000 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.038 0.962 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.156 0.844 47 H 0.178 0.822 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 -22.124 -1.879 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.585 4.585 8 H 0.084 0.916 9 C -0.010 4.010 10 C 0.020 3.980 11 N -0.346 5.346 12 C -0.031 4.031 13 C -0.139 4.139 14 C -0.031 4.031 15 C -0.143 4.143 16 C -0.149 4.149 17 C -0.101 4.101 18 N -0.193 5.193 19 C -0.060 4.060 20 C -0.134 4.134 21 C -0.066 4.066 22 C -0.198 4.198 23 C 0.130 3.870 24 F -0.098 7.098 25 N -0.251 5.251 26 C -0.008 4.008 27 C 0.275 3.725 28 O -0.456 6.456 29 H 0.073 0.927 30 H -0.009 1.009 31 H 0.018 0.982 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.152 0.848 38 H 0.075 0.925 39 H 0.135 0.865 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.056 0.944 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.173 0.827 47 H 0.196 0.804 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.535 -21.929 -1.788 22.148 hybrid contribution 1.200 2.091 -1.199 2.693 sum -1.336 -19.838 -2.987 20.106 Atomic orbital electron populations 1.70101 1.07912 1.27919 1.51060 1.25964 0.95718 1.03406 0.94367 0.85486 0.78284 0.77878 0.79342 1.19549 1.20915 1.18400 1.21518 0.93719 0.91872 1.51430 0.91626 1.19157 0.94441 0.92948 0.94424 1.21363 0.93925 0.81145 1.01612 1.48744 1.55398 1.22056 1.08397 1.22505 0.99148 0.94807 0.86659 1.22702 0.98699 1.01140 0.91408 1.22245 0.90598 0.93262 0.96971 1.22341 0.96754 0.92408 1.02778 1.22532 0.97587 0.96985 0.97790 1.23446 0.99422 0.93964 0.93290 1.65153 1.26217 1.08957 1.18974 1.21414 0.94825 0.92336 0.97413 1.20728 0.95775 1.01667 0.95250 1.21665 0.99886 0.92690 0.92331 1.22017 0.89918 1.04174 1.03649 1.18445 0.82835 0.98615 0.87096 1.91599 1.52345 1.92076 1.73827 1.67008 1.36851 1.15760 1.05519 1.22567 0.85755 0.92714 0.99720 1.21944 0.79126 0.87044 0.84349 1.90587 1.58882 1.73499 1.22638 0.92747 1.00857 0.98214 0.89195 0.92981 0.87946 0.90447 0.90113 0.84787 0.92464 0.86495 0.89544 0.88446 0.94351 0.89117 0.91344 0.91892 0.82654 0.80439 0.80607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 2 C 0.00 0.22 5.46 84.66 0.46 0.69 16 3 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.55 -31.00 9.11 25.60 0.23 -30.77 16 8 H 0.07 3.51 7.74 -2.92 -0.02 3.48 16 9 C 0.03 1.50 5.30 29.85 0.16 1.66 16 10 C 0.14 5.85 5.88 86.38 0.51 6.36 16 11 N -0.61 -20.88 2.94 -818.10 -2.41 -23.29 16 12 C 0.09 2.08 7.36 86.87 0.64 2.72 16 13 C -0.10 -1.89 6.39 31.44 0.20 -1.69 16 14 C 0.06 1.47 0.76 3.05 0.00 1.47 16 15 C -0.10 -1.77 6.24 31.29 0.20 -1.58 16 16 C -0.11 -1.60 7.07 31.89 0.23 -1.37 16 17 C 0.03 0.52 5.13 86.64 0.44 0.97 16 18 N -0.47 -11.11 4.98 -844.26 -4.20 -15.31 16 19 C 0.07 2.02 4.19 85.56 0.36 2.38 16 20 C -0.13 -3.40 4.84 -19.77 -0.10 -3.50 16 21 C -0.04 -0.88 8.69 22.46 0.20 -0.69 16 22 C -0.18 -3.59 10.09 22.41 0.23 -3.37 16 23 C 0.28 7.23 8.41 84.74 0.71 7.95 16 24 F -0.12 -3.03 17.29 44.97 0.78 -2.25 16 25 N -0.54 -15.29 10.37 -196.92 -2.04 -17.33 16 26 C 0.15 3.91 10.86 84.64 0.92 4.83 16 27 C 0.49 16.80 5.46 87.61 0.48 17.27 16 28 O -0.58 -24.65 15.08 -3.05 -0.05 -24.69 16 29 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 30 H -0.03 -1.66 8.14 -2.39 -0.02 -1.68 16 31 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.05 2.32 7.93 -2.39 -0.02 2.30 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 37 H 0.13 1.40 7.41 -2.38 -0.02 1.38 16 38 H 0.06 1.17 7.73 -2.39 -0.02 1.15 16 39 H 0.12 1.22 7.29 -2.38 -0.02 1.20 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.04 0.91 7.58 -2.39 -0.02 0.89 16 43 H 0.09 1.64 7.79 -2.39 -0.02 1.62 16 44 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 45 H 0.06 2.32 4.98 -2.39 -0.01 2.31 16 46 H 0.16 3.08 7.68 -2.91 -0.02 3.05 16 47 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 48 H 0.18 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -75.69 389.79 1.22 -74.48 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.96 Total: 15.59 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.86 Total: 3.33 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -8.37 Total: -112.61 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.69 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -75.69 1.22 -74.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273241426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.012 kcal (2) G-P(sol) polarization free energy of solvation -75.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds