Wall clock time and date at job start Wed Apr 1 2020 04:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.46773 * 180.02562 * 10 9 7 12 12 C 1.46881 * 124.37154 * 90.00435 * 11 10 9 13 13 C 1.54706 * 105.51455 * 196.78826 * 12 11 10 14 14 C 1.53615 * 101.50972 * 335.46933 * 13 12 11 15 15 C 1.53250 * 111.05504 * 262.68393 * 14 13 12 16 16 C 1.54642 * 104.67647 * 239.01799 * 15 14 13 17 17 N 1.48646 * 104.63364 * 23.68066 * 16 15 14 18 18 C 1.46901 * 111.00084 * 201.49077 * 17 16 15 19 19 C 1.50692 * 109.46934 * 69.87389 * 18 17 16 20 20 C 1.38156 * 119.59996 * 95.00027 * 19 18 17 21 21 C 1.38700 * 119.22014 * 179.97438 * 20 19 18 22 22 C 1.38550 * 118.45616 * 0.02562 * 21 20 19 23 23 C 1.38520 * 119.13855 * 0.02562 * 22 21 20 24 24 F 1.35100 * 119.65021 * 179.97438 * 23 22 21 25 25 N 1.31907 * 119.60773 * 274.73054 * 19 18 17 26 26 C 1.48798 * 104.38409 * 321.14301 * 17 16 15 27 27 C 1.34756 * 124.37078 * 269.69635 * 11 10 9 28 28 O 1.21278 * 125.13512 * 359.00969 * 27 11 10 29 29 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 31 31 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 32 32 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 33 33 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 34 34 H 1.08997 * 110.23697 * 315.79386 * 12 11 10 35 35 H 1.08995 * 110.23889 * 77.69064 * 12 11 10 36 36 H 1.08997 * 111.02012 * 93.53014 * 13 12 11 37 37 H 1.09003 * 111.01505 * 217.41361 * 13 12 11 38 38 H 1.09003 * 110.39619 * 357.81345 * 15 14 13 39 39 H 1.08998 * 110.40069 * 120.21636 * 15 14 13 40 40 H 1.08996 * 110.40402 * 142.47288 * 16 15 14 41 41 H 1.08995 * 110.40486 * 264.89362 * 16 15 14 42 42 H 1.09005 * 109.47260 * 189.87461 * 18 17 16 43 43 H 1.09004 * 109.46787 * 309.87199 * 18 17 16 44 44 H 1.07999 * 120.38589 * 359.97438 * 20 19 18 45 45 H 1.08003 * 120.77459 * 179.97438 * 21 20 19 46 46 H 1.08001 * 120.43517 * 179.97438 * 22 21 20 47 47 H 1.09001 * 110.46013 * 279.83181 * 26 17 16 48 48 H 1.09008 * 110.46009 * 157.26310 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5128 -4.9308 -0.0001 12 6 1.0987 -5.6486 -1.2128 13 6 0.0198 -6.6559 -0.7493 14 6 0.3852 -6.8367 0.7317 15 6 1.2355 -8.0946 0.9394 16 6 0.4190 -8.9608 1.9266 17 7 -0.9844 -8.5010 1.7576 18 6 -1.7937 -8.8358 2.9370 19 6 -1.3616 -7.9825 4.1014 20 6 -2.0383 -6.8098 4.3763 21 6 -1.6342 -6.0307 5.4503 22 6 -0.5594 -6.4616 6.2110 23 6 0.0719 -7.6480 5.8755 24 9 1.1212 -8.0777 6.6100 25 7 -0.3453 -8.3668 4.8492 26 6 -0.8726 -7.0269 1.5887 27 6 1.1371 -5.5929 1.1119 28 8 1.3690 -5.2372 2.2479 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 0.8902 31 1 0.6248 -2.5571 -0.8897 32 1 2.8720 -3.6043 -0.8895 33 1 2.8719 -3.6043 0.8905 34 1 0.6776 -4.9522 -1.9378 35 1 1.9476 -6.1766 -1.6469 36 1 -0.9799 -6.2351 -0.8568 37 1 0.1060 -7.5979 -1.2910 38 1 1.3717 -8.6214 -0.0051 39 1 2.2011 -7.8334 1.3723 40 1 0.5068 -10.0162 1.6685 41 1 0.7544 -8.7897 2.9494 42 1 -2.8457 -8.6495 2.7206 43 1 -1.6549 -9.8879 3.1861 44 1 -2.8720 -6.5033 3.7620 45 1 -2.1449 -5.1091 5.6875 46 1 -0.2177 -5.8796 7.0542 47 1 -0.7511 -6.5406 2.5566 48 1 -1.7486 -6.6350 1.0716 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273300861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:29 Heat of formation + Delta-G solvation = -49.498179 kcal Electronic energy + Delta-G solvation = -31441.879719 eV Core-core repulsion = 27217.426232 eV Total energy + Delta-G solvation = -4224.453487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.14189 -42.33039 -41.28551 -38.97974 -37.50450 -35.89631 -34.64054 -33.69126 -32.85787 -31.17876 -30.38228 -29.28570 -27.50961 -26.77621 -24.91324 -24.40870 -23.60533 -23.49816 -21.99233 -21.55604 -19.98869 -18.96169 -18.69484 -18.10069 -17.68379 -17.24966 -17.17440 -17.10478 -16.75423 -16.51757 -16.16577 -15.89560 -15.40335 -15.22747 -14.93771 -14.67791 -14.63151 -14.53437 -14.28003 -14.16278 -14.02140 -13.70624 -13.49800 -13.33649 -13.27712 -12.91193 -12.79097 -12.61452 -12.46781 -12.39583 -12.33259 -12.01016 -11.96865 -11.74152 -11.59840 -11.44386 -11.07813 -10.93307 -10.69997 -10.59989 -9.96264 -9.60938 -9.56527 -8.25272 -6.38070 -0.21303 0.04090 1.37932 1.41622 1.48823 1.52739 2.10767 2.38530 2.39551 2.46502 2.93565 3.08150 3.30493 3.36164 3.41537 3.57129 3.64977 3.87748 3.92923 3.98446 4.03781 4.23087 4.28585 4.30581 4.36893 4.43512 4.51943 4.60380 4.62600 4.64940 4.70258 4.75429 4.82877 4.85024 4.87349 4.91112 4.97276 5.01419 5.08793 5.10325 5.19563 5.31242 5.44571 5.53916 5.57492 5.64485 5.80474 5.84562 6.13502 6.27347 6.53053 6.76231 7.18387 7.31664 8.86571 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.003166 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.682160 B = 8841.846558 C =10163.991506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.028 3.972 10 C 0.141 3.859 11 N -0.617 5.617 12 C 0.091 3.909 13 C -0.100 4.100 14 C -0.095 4.095 15 C -0.095 4.095 16 C 0.025 3.975 17 N -0.474 5.474 18 C 0.091 3.909 19 C 0.118 3.882 20 C -0.170 4.170 21 C -0.050 4.050 22 C -0.196 4.196 23 C 0.275 3.725 24 F -0.126 7.126 25 N -0.523 5.523 26 C 0.042 3.958 27 C 0.509 3.491 28 O -0.587 6.587 29 H 0.265 0.735 30 H -0.027 1.027 31 H 0.003 0.997 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.117 0.883 39 H 0.045 0.955 40 H 0.109 0.891 41 H 0.039 0.961 42 H 0.130 0.870 43 H 0.105 0.895 44 H 0.169 0.831 45 H 0.172 0.828 46 H 0.163 0.837 47 H 0.039 0.961 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 -20.763 2.167 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.082 0.918 9 C -0.010 4.010 10 C 0.019 3.981 11 N -0.349 5.349 12 C -0.031 4.031 13 C -0.137 4.137 14 C -0.099 4.099 15 C -0.134 4.134 16 C -0.103 4.103 17 N -0.195 5.195 18 C -0.038 4.038 19 C -0.022 4.022 20 C -0.190 4.190 21 C -0.076 4.076 22 C -0.217 4.217 23 C 0.123 3.877 24 F -0.105 7.105 25 N -0.239 5.239 26 C -0.086 4.086 27 C 0.298 3.702 28 O -0.467 6.467 29 H 0.074 0.926 30 H -0.009 1.009 31 H 0.022 0.978 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.149 0.851 38 H 0.135 0.865 39 H 0.064 0.936 40 H 0.127 0.873 41 H 0.058 0.942 42 H 0.148 0.852 43 H 0.123 0.877 44 H 0.187 0.813 45 H 0.190 0.810 46 H 0.181 0.819 47 H 0.057 0.943 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.113 -21.459 2.088 22.410 hybrid contribution 0.899 2.543 1.735 3.207 sum -5.214 -18.916 3.822 19.990 Atomic orbital electron populations 1.70094 1.07858 1.28004 1.50958 1.25964 0.95775 1.03368 0.94267 0.85467 0.78296 0.77819 0.79271 1.18473 1.20587 1.19696 1.21509 0.93673 0.91909 1.51638 0.91801 1.19165 0.94433 0.92844 0.94569 1.21358 0.94021 0.81305 1.01379 1.48749 1.55780 1.22107 1.08239 1.22493 0.99117 0.95002 0.86492 1.22736 0.98749 1.00970 0.91244 1.21381 0.96366 0.93050 0.99065 1.22209 0.96545 0.92716 1.01906 1.23375 0.87911 1.00832 0.98166 1.65928 1.10705 1.09291 1.33581 1.21703 1.00036 0.99264 0.82784 1.22247 0.89614 0.95178 0.95128 1.22461 1.02553 0.95275 0.98756 1.21933 0.93692 0.99620 0.92305 1.22117 0.98845 0.96301 1.04423 1.18466 0.86752 0.92176 0.90334 1.91577 1.54494 1.90270 1.74144 1.66813 1.15982 1.35469 1.05683 1.23171 0.96751 0.90040 0.98681 1.21207 0.79059 0.85897 0.84086 1.90642 1.59765 1.73141 1.23192 0.92614 1.00866 0.97839 0.89188 0.93460 0.90116 0.88648 0.89298 0.85080 0.86453 0.93602 0.87286 0.94219 0.85213 0.87651 0.81305 0.81033 0.81943 0.94280 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 2 C 0.00 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.55 -31.68 9.11 25.60 0.23 -31.44 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.52 5.30 29.85 0.16 1.68 16 10 C 0.14 6.19 5.89 86.38 0.51 6.69 16 11 N -0.62 -22.68 2.94 -818.15 -2.41 -25.09 16 12 C 0.09 2.23 7.36 86.89 0.64 2.87 16 13 C -0.10 -1.93 6.24 31.38 0.20 -1.73 16 14 C -0.09 -2.47 0.83 -52.66 -0.04 -2.51 16 15 C -0.10 -2.13 6.32 31.24 0.20 -1.93 16 16 C 0.03 0.54 6.36 86.52 0.55 1.09 16 17 N -0.47 -9.14 5.65 -886.64 -5.01 -14.15 16 18 C 0.09 1.52 5.90 85.55 0.50 2.03 16 19 C 0.12 2.68 4.46 42.53 0.19 2.87 16 20 C -0.17 -3.50 7.90 22.36 0.18 -3.32 16 21 C -0.05 -1.07 10.17 22.45 0.23 -0.84 16 22 C -0.20 -4.76 10.09 22.41 0.23 -4.53 16 23 C 0.28 7.98 8.41 84.73 0.71 8.69 16 24 F -0.13 -3.78 17.29 44.97 0.78 -3.01 16 25 N -0.52 -14.72 8.58 -184.95 -1.59 -16.31 16 26 C 0.04 1.02 5.22 86.06 0.45 1.47 16 27 C 0.51 19.62 6.64 87.51 0.58 20.20 16 28 O -0.59 -28.68 17.09 -3.02 -0.05 -28.73 16 29 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 30 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 31 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.05 2.25 7.93 -2.39 -0.02 2.23 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 1.68 7.51 -2.39 -0.02 1.66 16 37 H 0.13 1.56 7.42 -2.39 -0.02 1.54 16 38 H 0.12 1.78 7.32 -2.39 -0.02 1.76 16 39 H 0.05 1.25 7.75 -2.39 -0.02 1.23 16 40 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.04 1.11 5.86 -2.39 -0.01 1.09 16 42 H 0.13 1.42 8.04 -2.38 -0.02 1.41 16 43 H 0.11 1.61 8.09 -2.39 -0.02 1.60 16 44 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 45 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 46 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 47 H 0.04 1.21 4.37 -2.39 -0.01 1.20 16 48 H 0.11 2.24 7.46 -2.38 -0.02 2.23 16 Total: -1.00 -80.57 388.18 0.97 -79.60 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.97 Total: 15.79 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 5.97 Total: 2.03 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -8.72 Total: -112.02 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.05 Total: -28.73 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.78 Total: -3.01 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -80.57 0.97 -79.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273300861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.097 kcal (2) G-P(sol) polarization free energy of solvation -80.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds