Wall clock time and date at job start Wed Apr 1 2020 05:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48492 * 109.47500 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46949 * 299.99890 * 3 2 1 6 6 H 1.48503 * 109.47143 * 59.99709 * 3 2 1 7 7 C 1.38951 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99988 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00217 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99639 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00247 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46803 * 179.97438 * 12 10 9 14 14 C 1.48660 * 111.00317 * 307.46828 * 13 12 10 15 15 C 1.55253 * 103.41835 * 201.06589 * 14 13 12 16 16 C 1.53219 * 102.54625 * 36.24464 * 15 14 13 17 17 C 1.53954 * 111.41808 * 216.49953 * 16 15 14 18 18 C 1.54582 * 102.67981 * 273.70228 * 17 16 15 19 19 N 1.47134 * 107.44855 * 339.25736 * 18 17 16 20 20 C 1.34770 * 125.60841 * 178.96542 * 19 18 17 21 21 O 1.21608 * 120.00203 * 180.02562 * 20 19 18 22 22 C 1.47425 * 119.99997 * 0.02677 * 20 19 18 23 23 C 1.41288 * 126.41857 * 0.02562 * 22 20 19 24 24 N 1.30449 * 108.02785 * 179.97438 * 23 22 20 25 25 N 1.39935 * 108.89674 * 0.02562 * 24 23 22 26 26 H 0.96992 * 125.75807 * 180.02562 * 25 24 23 27 27 C 1.34269 * 108.48870 * 359.74748 * 25 24 23 28 28 C 1.47698 * 108.78211 * 358.98632 * 19 18 17 29 29 C 1.48304 * 110.99766 * 189.99519 * 13 12 10 30 30 H 0.97006 * 119.99593 * 0.02562 * 1 2 3 31 31 H 0.96993 * 120.00113 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.46810 * 59.99967 * 12 10 9 33 33 H 1.08998 * 109.46962 * 299.99934 * 12 10 9 34 34 H 1.08996 * 110.63090 * 319.54938 * 14 13 12 35 35 H 1.09001 * 110.63183 * 82.42821 * 14 13 12 36 36 H 1.08999 * 110.80042 * 277.97793 * 15 14 13 37 37 H 1.09001 * 110.79491 * 154.50717 * 15 14 13 38 38 H 1.09007 * 110.73155 * 155.44748 * 17 16 15 39 39 H 1.09002 * 110.87361 * 32.02634 * 17 16 15 40 40 H 1.09002 * 109.87607 * 219.74865 * 18 17 16 41 41 H 1.09002 * 109.87326 * 98.76053 * 18 17 16 42 42 H 1.08001 * 125.98545 * 359.94296 * 23 22 20 43 43 H 1.08000 * 126.28787 * 180.24548 * 27 25 24 44 44 H 1.08997 * 110.39198 * 141.43739 * 28 19 18 45 45 H 1.09001 * 110.39078 * 263.81889 * 28 19 18 46 46 H 1.09000 * 110.04992 * 26.34233 * 29 13 12 47 47 H 1.08994 * 110.05719 * 264.85384 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0000 13 7 2.1982 -5.9795 -0.0005 14 6 3.1862 -5.8353 -1.1020 15 6 3.7195 -7.2800 -1.2989 16 6 2.4707 -8.1325 -1.0513 17 6 2.8200 -9.4428 -0.3222 18 6 3.1944 -10.3891 -1.4858 19 7 2.5935 -9.8403 -2.7116 20 6 2.7083 -10.3685 -3.9462 21 8 2.1672 -9.8279 -4.8916 22 6 3.4898 -11.6018 -4.1506 23 6 4.1702 -12.3383 -3.1552 24 7 4.7406 -13.3615 -3.7291 25 7 4.4571 -13.3288 -5.0991 26 1 4.7604 -13.9746 -5.7562 27 6 3.6895 -12.2561 -5.3496 28 6 1.8443 -8.6151 -2.3666 29 6 1.5072 -7.2694 -0.2414 30 1 -0.4850 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6173 -4.9204 -0.8903 33 1 0.6166 -4.9209 0.8897 34 1 2.6999 -5.4784 -2.0098 35 1 3.9921 -5.1624 -0.8094 36 1 4.4955 -7.5091 -0.5685 37 1 4.0891 -7.4210 -2.3146 38 1 1.9558 -9.8235 0.2223 39 1 3.6678 -9.3003 0.3478 40 1 2.7994 -11.3867 -1.2939 41 1 4.2783 -10.4341 -1.5926 42 1 4.2113 -12.0963 -2.1034 43 1 3.3015 -11.9586 -6.3126 44 1 1.9684 -7.8623 -3.1450 45 1 0.7882 -8.8435 -2.2230 46 1 0.5902 -7.1023 -0.8064 47 1 1.2788 -7.7541 0.7077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277501827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:31 Heat of formation + Delta-G solvation = 31.972656 kcal Electronic energy + Delta-G solvation = -30205.948500 eV Core-core repulsion = 26004.947815 eV Total energy + Delta-G solvation = -4201.000685 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.82931 -40.59199 -38.93214 -37.97803 -36.23656 -33.95047 -32.84595 -31.93222 -31.26304 -30.66611 -30.20217 -29.09488 -27.32497 -25.51241 -24.21553 -23.37258 -22.70994 -21.75879 -21.22495 -19.91237 -19.55292 -19.07217 -18.40209 -17.83084 -16.50227 -16.33503 -15.96312 -15.72083 -15.32918 -15.10755 -14.99054 -14.80843 -14.53172 -14.34983 -13.99052 -13.80487 -13.55637 -13.42284 -13.15181 -12.98377 -12.74305 -12.33979 -12.20575 -12.16105 -11.61588 -11.57844 -11.53023 -11.42024 -11.13966 -10.95300 -10.86654 -10.55121 -10.45539 -10.32488 -10.29327 -10.22111 -10.08160 -9.49080 -9.30427 -8.80792 -8.35452 -8.00191 -7.88003 -6.41615 -3.82300 1.12109 1.76275 2.24038 2.76967 3.16691 3.17836 3.27414 3.34514 3.90209 4.02231 4.10117 4.21315 4.27688 4.37212 4.43077 4.53709 4.67966 4.85510 4.90836 4.97454 5.01965 5.07730 5.19797 5.25283 5.28726 5.47507 5.53028 5.56203 5.62057 5.66224 5.76493 5.80066 5.85441 5.93184 5.95297 6.02563 6.13404 6.16402 6.27887 6.33706 6.60106 6.71913 7.00824 7.23928 7.31512 7.32266 7.55852 8.01844 8.06621 8.61857 9.18330 9.54277 10.05867 10.76131 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026030 B = 0.001888 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.410751 B =14829.027403 C =15112.499684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.442 3.558 11 O -0.581 6.581 12 C 0.036 3.964 13 N -0.494 5.494 14 C 0.039 3.961 15 C -0.111 4.111 16 C -0.082 4.082 17 C -0.116 4.116 18 C 0.094 3.906 19 N -0.611 5.611 20 C 0.609 3.391 21 O -0.549 6.549 22 C -0.289 4.289 23 C 0.072 3.928 24 N -0.297 5.297 25 N -0.464 5.464 26 H 0.445 0.555 27 C 0.134 3.866 28 C 0.122 3.878 29 C 0.049 3.951 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.035 0.965 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.201 0.799 43 H 0.192 0.808 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.047 0.953 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 -26.983 -5.962 27.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.466 6.466 12 C -0.096 4.096 13 N -0.218 5.218 14 C -0.088 4.088 15 C -0.149 4.149 16 C -0.083 4.083 17 C -0.154 4.154 18 C -0.029 4.029 19 N -0.345 5.345 20 C 0.399 3.601 21 O -0.428 6.428 22 C -0.304 4.304 23 C -0.116 4.116 24 N -0.118 5.118 25 N -0.169 5.169 26 H 0.290 0.710 27 C -0.019 4.019 28 C 0.000 4.000 29 C -0.080 4.080 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.136 0.864 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.217 0.783 43 H 0.209 0.791 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.145 -27.575 -5.832 28.651 hybrid contribution -1.184 1.250 -1.240 2.121 sum 3.962 -26.325 -7.072 27.545 Atomic orbital electron populations 1.69623 1.05944 1.28058 1.50605 1.25270 0.95639 0.99750 0.97334 0.85800 0.79707 0.81144 0.77690 1.19216 1.20792 1.20749 1.19749 0.93389 0.82180 1.47458 0.87827 1.41861 1.09215 1.04597 1.64178 1.19721 0.88357 0.84681 0.84445 1.90439 1.13730 1.86759 1.55633 1.22106 0.94620 0.91317 1.01568 1.64763 1.13015 0.99934 1.44109 1.23549 0.97498 0.96047 0.91750 1.22477 0.95888 0.94951 1.01548 1.21663 0.97060 0.95352 0.94258 1.22680 1.02916 0.93569 0.96275 1.22451 0.98273 0.97662 0.84554 1.48245 1.52371 1.27243 1.06615 1.16840 0.79473 0.82662 0.81173 1.90799 1.49087 1.62716 1.40177 1.20241 1.13750 1.02714 0.93657 1.24822 0.94318 0.91487 1.00975 1.77200 1.24092 1.22805 0.87671 1.46273 1.40068 1.22235 1.08337 0.71049 1.23067 0.91583 0.87160 1.00103 1.22191 0.95205 0.86243 0.96337 1.22758 0.95203 0.90970 0.99028 0.91919 0.77454 0.93343 0.89210 0.94656 0.86440 0.90415 0.91335 0.90124 0.89090 0.90972 0.90830 0.78294 0.79082 0.90038 0.91177 0.93438 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 10 C 0.44 10.31 7.49 -10.98 -0.08 10.23 16 11 O -0.58 -15.21 13.10 5.55 0.07 -15.14 16 12 C 0.04 0.63 5.52 -4.98 -0.03 0.60 16 13 N -0.49 -7.98 5.28 -232.11 -1.22 -9.20 16 14 C 0.04 0.64 5.31 -1.65 -0.01 0.63 16 15 C -0.11 -1.36 6.10 -25.42 -0.16 -1.52 16 16 C -0.08 -0.85 0.75 -153.85 -0.12 -0.96 16 17 C -0.12 -0.86 5.83 -25.40 -0.15 -1.01 16 18 C 0.09 0.65 4.93 -2.87 -0.01 0.64 16 19 N -0.61 -6.24 3.34 -172.20 -0.57 -6.82 16 20 C 0.61 7.27 7.85 -12.52 -0.10 7.17 16 21 O -0.55 -8.50 17.18 5.27 0.09 -8.41 16 22 C -0.29 -2.70 6.09 -105.07 -0.64 -3.34 16 23 C 0.07 0.58 10.44 -16.98 -0.18 0.40 16 24 N -0.30 -2.53 12.63 30.86 0.39 -2.14 16 25 N -0.46 -2.76 7.29 30.85 0.22 -2.54 16 26 H 0.44 1.05 8.96 -182.73 -1.64 -0.59 16 27 C 0.13 0.95 11.82 -16.56 -0.20 0.75 16 28 C 0.12 1.34 5.59 -3.14 -0.02 1.32 16 29 C 0.05 0.58 6.06 -3.24 -0.02 0.56 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 32 H 0.05 0.80 7.82 -51.93 -0.41 0.39 16 33 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.04 0.61 8.01 -51.93 -0.42 0.20 16 35 H 0.12 2.35 6.00 -51.93 -0.31 2.03 16 36 H 0.08 0.91 7.61 -51.93 -0.40 0.52 16 37 H 0.07 0.85 7.82 -51.93 -0.41 0.44 16 38 H 0.08 0.51 7.88 -51.93 -0.41 0.10 16 39 H 0.09 0.63 7.67 -51.93 -0.40 0.23 16 40 H 0.07 0.38 6.98 -51.93 -0.36 0.02 16 41 H 0.07 0.45 6.83 -51.93 -0.35 0.09 16 42 H 0.20 1.11 4.47 -52.49 -0.23 0.88 16 43 H 0.19 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.08 1.06 7.90 -51.93 -0.41 0.65 16 45 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 46 H 0.05 0.55 7.08 -51.93 -0.37 0.18 16 47 H 0.08 0.88 7.60 -51.93 -0.39 0.49 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -35.32 377.09 -9.23 -44.55 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.59 Total: 8.48 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -1.94 Total: 7.54 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.52 Total: -58.74 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.16 Total: -23.55 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.32 -9.23 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277501827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.528 kcal (2) G-P(sol) polarization free energy of solvation -35.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds