Wall clock time and date at job start Wed Apr 1 2020 05:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48492 * 109.47500 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46949 * 299.99890 * 3 2 1 6 6 H 1.48503 * 109.47143 * 59.99709 * 3 2 1 7 7 C 1.38951 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99988 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00217 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99639 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00247 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46803 * 179.97438 * 12 10 9 14 14 C 1.48660 * 111.00317 * 307.46828 * 13 12 10 15 15 C 1.55253 * 103.41835 * 201.06589 * 14 13 12 16 16 C 1.53219 * 102.54625 * 36.24464 * 15 14 13 17 17 C 1.53954 * 111.41808 * 216.49953 * 16 15 14 18 18 C 1.54582 * 102.67981 * 273.70228 * 17 16 15 19 19 N 1.47134 * 107.44855 * 339.25736 * 18 17 16 20 20 C 1.34770 * 125.60841 * 178.96542 * 19 18 17 21 21 O 1.21608 * 120.00203 * 180.02562 * 20 19 18 22 22 C 1.47425 * 119.99997 * 0.02677 * 20 19 18 23 23 C 1.41288 * 126.41857 * 0.02562 * 22 20 19 24 24 N 1.30449 * 108.02785 * 179.97438 * 23 22 20 25 25 N 1.39935 * 108.89674 * 0.02562 * 24 23 22 26 26 H 0.96992 * 125.75807 * 180.02562 * 25 24 23 27 27 C 1.34269 * 108.48870 * 359.74748 * 25 24 23 28 28 C 1.47698 * 108.78211 * 358.98632 * 19 18 17 29 29 C 1.48304 * 110.99766 * 189.99519 * 13 12 10 30 30 H 0.97006 * 119.99593 * 0.02562 * 1 2 3 31 31 H 0.96993 * 120.00113 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.46810 * 59.99967 * 12 10 9 33 33 H 1.08998 * 109.46962 * 299.99934 * 12 10 9 34 34 H 1.08996 * 110.63090 * 319.54938 * 14 13 12 35 35 H 1.09001 * 110.63183 * 82.42821 * 14 13 12 36 36 H 1.08999 * 110.80042 * 277.97793 * 15 14 13 37 37 H 1.09001 * 110.79491 * 154.50717 * 15 14 13 38 38 H 1.09007 * 110.73155 * 155.44748 * 17 16 15 39 39 H 1.09002 * 110.87361 * 32.02634 * 17 16 15 40 40 H 1.09002 * 109.87607 * 219.74865 * 18 17 16 41 41 H 1.09002 * 109.87326 * 98.76053 * 18 17 16 42 42 H 1.08001 * 125.98545 * 359.94296 * 23 22 20 43 43 H 1.08000 * 126.28787 * 180.24548 * 27 25 24 44 44 H 1.08997 * 110.39198 * 141.43739 * 28 19 18 45 45 H 1.09001 * 110.39078 * 263.81889 * 28 19 18 46 46 H 1.09000 * 110.04992 * 26.34233 * 29 13 12 47 47 H 1.08994 * 110.05719 * 264.85384 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0000 13 7 2.1982 -5.9795 -0.0005 14 6 3.1862 -5.8353 -1.1020 15 6 3.7195 -7.2800 -1.2989 16 6 2.4707 -8.1325 -1.0513 17 6 2.8200 -9.4428 -0.3222 18 6 3.1944 -10.3891 -1.4858 19 7 2.5935 -9.8403 -2.7116 20 6 2.7083 -10.3685 -3.9462 21 8 2.1672 -9.8279 -4.8916 22 6 3.4898 -11.6018 -4.1506 23 6 4.1702 -12.3383 -3.1552 24 7 4.7406 -13.3615 -3.7291 25 7 4.4571 -13.3288 -5.0991 26 1 4.7604 -13.9746 -5.7562 27 6 3.6895 -12.2561 -5.3496 28 6 1.8443 -8.6151 -2.3666 29 6 1.5072 -7.2694 -0.2414 30 1 -0.4850 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6173 -4.9204 -0.8903 33 1 0.6166 -4.9209 0.8897 34 1 2.6999 -5.4784 -2.0098 35 1 3.9921 -5.1624 -0.8094 36 1 4.4955 -7.5091 -0.5685 37 1 4.0891 -7.4210 -2.3146 38 1 1.9558 -9.8235 0.2223 39 1 3.6678 -9.3003 0.3478 40 1 2.7994 -11.3867 -1.2939 41 1 4.2783 -10.4341 -1.5926 42 1 4.2113 -12.0963 -2.1034 43 1 3.3015 -11.9586 -6.3126 44 1 1.9684 -7.8623 -3.1450 45 1 0.7882 -8.8435 -2.2230 46 1 0.5902 -7.1023 -0.8064 47 1 1.2788 -7.7541 0.7077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277501827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:30 Heat of formation + Delta-G solvation = 3.647856 kcal Electronic energy + Delta-G solvation = -30207.176756 eV Core-core repulsion = 26004.947815 eV Total energy + Delta-G solvation = -4202.228941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.43940 -41.49989 -40.29776 -39.33136 -37.37197 -35.91312 -33.82098 -33.27761 -32.61428 -31.40871 -31.06922 -30.01620 -28.68636 -26.86519 -25.67625 -24.18002 -23.41675 -22.51528 -22.36200 -21.07949 -20.57731 -20.25634 -19.81848 -19.08646 -17.73579 -17.25135 -17.08384 -16.81607 -16.58372 -16.24323 -16.10358 -15.84890 -15.67207 -15.52525 -15.43233 -14.86690 -14.72724 -14.38436 -14.19764 -13.89953 -13.71200 -13.65741 -13.43545 -13.39809 -13.18004 -12.93111 -12.64692 -12.42964 -12.36194 -12.21859 -12.19671 -12.11721 -11.78305 -11.54534 -11.48365 -11.30268 -10.97212 -10.86088 -10.14897 -9.99951 -9.98967 -9.55083 -9.29319 -8.46898 -5.95283 0.51631 1.13853 1.36108 1.41329 1.55546 1.75090 2.04514 2.05958 2.28685 2.40762 2.88207 3.20116 3.26678 3.41780 3.50343 3.67527 3.75609 3.89682 3.99580 4.03504 4.22121 4.28864 4.33304 4.36322 4.38567 4.47517 4.53833 4.56000 4.64945 4.68543 4.72590 4.76687 4.84629 4.98773 5.05312 5.14736 5.20647 5.26492 5.31269 5.36523 5.41189 5.42542 5.87982 5.97622 6.14261 6.19949 6.46143 6.55980 6.60696 7.13092 7.17912 7.55828 8.11779 8.70811 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026030 B = 0.001888 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.410751 B =14829.027403 C =15112.499684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.613 6.613 12 C 0.047 3.953 13 N -0.506 5.506 14 C 0.039 3.961 15 C -0.097 4.097 16 C -0.074 4.074 17 C -0.107 4.107 18 C 0.089 3.911 19 N -0.611 5.611 20 C 0.603 3.397 21 O -0.598 6.598 22 C -0.317 4.317 23 C 0.078 3.922 24 N -0.320 5.320 25 N -0.449 5.449 26 H 0.460 0.540 27 C 0.145 3.855 28 C 0.123 3.877 29 C 0.050 3.950 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.015 0.985 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.221 0.779 43 H 0.211 0.789 44 H 0.051 0.949 45 H 0.078 0.922 46 H 0.054 0.946 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 -29.267 -5.143 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.500 6.500 12 C -0.085 4.085 13 N -0.231 5.231 14 C -0.089 4.089 15 C -0.135 4.135 16 C -0.075 4.075 17 C -0.145 4.145 18 C -0.033 4.033 19 N -0.343 5.343 20 C 0.394 3.606 21 O -0.481 6.481 22 C -0.332 4.332 23 C -0.109 4.109 24 N -0.141 5.141 25 N -0.156 5.156 26 H 0.308 0.692 27 C -0.010 4.010 28 C 0.000 4.000 29 C -0.078 4.078 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.081 0.919 33 H 0.131 0.869 34 H 0.034 0.966 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.237 0.763 43 H 0.228 0.772 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.003 -29.915 -4.987 30.737 hybrid contribution -1.111 1.904 -1.536 2.687 sum 3.892 -28.010 -6.523 29.022 Atomic orbital electron populations 1.69683 1.06828 1.29193 1.50473 1.26047 0.96559 1.02434 0.96368 0.84868 0.78031 0.77122 0.78294 1.19784 1.19739 1.19521 1.19692 0.92683 0.83960 1.49708 0.90267 1.41937 1.09302 1.04731 1.65136 1.20763 0.88336 0.86042 0.82237 1.90439 1.15548 1.87612 1.56376 1.22010 0.94380 0.88776 1.03303 1.64758 1.13254 1.01074 1.43996 1.23331 0.96586 0.97987 0.90957 1.22356 0.97080 0.92461 1.01645 1.21541 0.95350 0.96367 0.94266 1.22711 1.04298 0.91232 0.96267 1.22707 0.99074 0.98639 0.82833 1.48307 1.51947 1.26743 1.07280 1.17242 0.79163 0.83143 0.81013 1.90763 1.51320 1.64284 1.41735 1.20200 1.15175 1.02620 0.95177 1.25111 0.93346 0.90738 1.01728 1.77166 1.24863 1.23328 0.88742 1.46292 1.39149 1.22089 1.08057 0.69205 1.23390 0.90538 0.86679 1.00379 1.22100 0.95970 0.86196 0.95724 1.22897 0.95319 0.88892 1.00681 0.91335 0.77064 0.91854 0.86896 0.96643 0.90538 0.89350 0.91730 0.88037 0.87915 0.88413 0.89579 0.76281 0.77245 0.92997 0.90348 0.92788 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.22 13.05 21.66 0.28 -49.93 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 3 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -29.84 5.29 -306.98 -1.62 -31.46 16 10 C 0.44 21.07 7.49 87.66 0.66 21.72 16 11 O -0.61 -33.63 13.10 -3.07 -0.04 -33.67 16 12 C 0.05 1.64 5.52 85.56 0.47 2.11 16 13 N -0.51 -16.02 5.28 -888.25 -4.69 -20.71 16 14 C 0.04 1.34 5.31 86.74 0.46 1.80 16 15 C -0.10 -2.36 6.10 31.44 0.19 -2.17 16 16 C -0.07 -1.38 0.75 -51.75 -0.04 -1.42 16 17 C -0.11 -1.17 5.83 31.45 0.18 -0.98 16 18 C 0.09 0.95 4.93 86.80 0.43 1.37 16 19 N -0.61 -11.59 3.34 -816.99 -2.73 -14.32 16 20 C 0.60 14.09 7.85 86.66 0.68 14.77 16 21 O -0.60 -18.96 17.18 -4.06 -0.07 -19.03 16 22 C -0.32 -5.48 6.09 -20.15 -0.12 -5.60 16 23 C 0.08 1.07 10.44 85.65 0.89 1.96 16 24 N -0.32 -4.73 12.63 -56.27 -0.71 -5.44 16 25 N -0.45 -4.43 7.29 -56.31 -0.41 -4.84 16 26 H 0.46 1.19 8.96 -213.44 -1.91 -0.72 16 27 C 0.15 1.82 11.82 84.27 1.00 2.81 16 28 C 0.12 2.59 5.59 86.31 0.48 3.07 16 29 C 0.05 1.06 6.06 85.91 0.52 1.58 16 30 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 31 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 32 H 0.06 2.04 7.82 -2.39 -0.02 2.03 16 33 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 34 H 0.02 0.57 8.01 -2.39 -0.02 0.55 16 35 H 0.08 3.26 6.00 -2.39 -0.01 3.24 16 36 H 0.09 1.96 7.61 -2.39 -0.02 1.94 16 37 H 0.06 1.61 7.82 -2.39 -0.02 1.60 16 38 H 0.10 0.77 7.88 -2.38 -0.02 0.75 16 39 H 0.10 0.97 7.67 -2.39 -0.02 0.95 16 40 H 0.10 0.61 6.98 -2.39 -0.02 0.60 16 41 H 0.09 0.74 6.83 -2.39 -0.02 0.73 16 42 H 0.22 1.72 4.47 -2.91 -0.01 1.71 16 43 H 0.21 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.05 1.40 7.90 -2.39 -0.02 1.38 16 45 H 0.08 1.52 7.92 -2.39 -0.02 1.50 16 46 H 0.05 1.12 7.08 -2.39 -0.02 1.10 16 47 H 0.11 1.85 7.60 -2.39 -0.02 1.83 16 Total: -1.00 -80.24 377.09 -2.48 -82.71 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -1.60 Total: 28.66 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 7.08 Total: 22.55 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -9.88 Total: -126.70 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -0.11 Total: -52.70 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -80.24 -2.48 -82.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277501827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.363 kcal (2) G-P(sol) polarization free energy of solvation -80.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds