Wall clock time and date at job start Wed Apr 1 2020 04:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99977 * 2 1 4 4 H 1.48501 * 109.46933 * 269.99926 * 3 2 1 5 5 H 1.48492 * 109.47181 * 29.99909 * 3 2 1 6 6 H 1.48497 * 109.47226 * 150.00129 * 3 2 1 7 7 C 1.37878 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99870 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00097 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47070 * 179.97438 * 9 7 2 11 11 C 1.48267 * 110.99930 * 169.99566 * 10 9 7 12 12 C 1.52377 * 85.65828 * 223.44576 * 11 10 9 13 13 C 1.48271 * 110.99721 * 70.29309 * 10 9 7 14 14 C 1.53659 * 116.37788 * 141.49022 * 12 11 10 15 15 C 1.54606 * 102.73299 * 95.45393 * 14 12 11 16 16 N 1.47133 * 107.36375 * 20.75693 * 15 14 12 17 17 C 1.34779 * 125.58622 * 180.93309 * 16 15 14 18 18 O 1.21592 * 120.00034 * 180.02562 * 17 16 15 19 19 N 1.34780 * 119.99946 * 0.02562 * 17 16 15 20 20 C 1.46503 * 119.99911 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.46972 * 180.02562 * 20 19 17 22 22 C 1.38241 * 119.97433 * 89.99758 * 21 20 19 23 23 C 1.38205 * 120.02377 * 179.74187 * 22 21 20 24 24 C 1.38455 * 119.97496 * 0.26259 * 23 22 21 25 25 F 1.35097 * 120.02414 * 180.02562 * 24 23 22 26 26 C 1.38464 * 119.95049 * 359.97438 * 24 23 22 27 27 C 1.38201 * 119.97214 * 0.02562 * 26 24 23 28 28 C 1.47724 * 108.82918 * 1.19205 * 16 15 14 29 29 H 0.96995 * 120.00073 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47302 * 59.99402 * 9 7 2 31 31 H 1.09002 * 109.47023 * 299.99656 * 9 7 2 32 32 H 1.08999 * 113.84327 * 109.26047 * 11 10 9 33 33 H 1.08998 * 113.95748 * 337.64578 * 11 10 9 34 34 H 1.08993 * 113.84852 * 22.36917 * 13 10 9 35 35 H 1.09005 * 113.83609 * 250.73719 * 13 10 9 36 36 H 1.09001 * 110.75947 * 337.13912 * 14 12 11 37 37 H 1.09003 * 110.75529 * 213.76388 * 14 12 11 38 38 H 1.09001 * 109.86393 * 261.31116 * 15 14 12 39 39 H 1.09001 * 109.97834 * 140.27040 * 15 14 12 40 40 H 0.96999 * 119.99453 * 0.02562 * 19 17 16 41 41 H 1.09002 * 109.47047 * 59.99997 * 20 19 17 42 42 H 1.08994 * 109.46875 * 300.00206 * 20 19 17 43 43 H 1.08002 * 119.99029 * 0.02809 * 22 21 20 44 44 H 1.08004 * 120.00758 * 180.27782 * 23 22 21 45 45 H 1.07993 * 120.01407 * 180.02562 * 26 24 23 46 46 H 1.07996 * 119.98812 * 180.02562 * 27 26 24 47 47 H 1.09000 * 110.39965 * 96.06490 * 28 16 15 48 48 H 1.08993 * 110.40145 * 218.48069 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 5.4636 -2.6256 -0.2400 12 6 5.1553 -3.7830 -1.1819 13 6 3.7387 -3.2353 -1.3035 14 6 5.9771 -3.8453 -2.4787 15 6 7.1212 -4.8179 -2.1107 16 7 6.6698 -5.6098 -0.9558 17 6 7.3909 -6.5577 -0.3248 18 8 6.9156 -7.1526 0.6232 19 7 8.6387 -6.8461 -0.7445 20 6 9.4223 -7.8768 -0.0589 21 6 10.7714 -8.0037 -0.7183 22 6 11.8307 -7.2325 -0.2777 23 6 13.0698 -7.3519 -0.8781 24 6 13.2485 -8.2404 -1.9248 25 9 14.4594 -8.3583 -2.5121 26 6 12.1855 -9.0088 -2.3685 27 6 10.9474 -8.8877 -1.7665 28 6 5.2945 -5.2002 -0.6051 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6808 0.8904 31 1 3.8752 -0.6797 -0.8895 32 1 6.0449 -2.9133 0.6360 33 1 5.8581 -1.7421 -0.7418 34 1 3.6057 -2.5368 -2.1296 35 1 2.9649 -4.0020 -1.2628 36 1 6.3728 -2.8619 -2.7330 37 1 5.3781 -4.2453 -3.2969 38 1 8.0159 -4.2542 -1.8465 39 1 7.3342 -5.4776 -2.9519 40 1 9.0179 -6.3712 -1.5005 41 1 8.8978 -8.8306 -0.1171 42 1 9.5539 -7.5977 0.9864 43 1 11.6912 -6.5397 0.5390 44 1 13.8984 -6.7525 -0.5308 45 1 12.3239 -9.7025 -3.1845 46 1 10.1182 -9.4872 -2.1121 47 1 4.5693 -5.8727 -1.0633 48 1 5.1674 -5.1834 0.4773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277941404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:45 Heat of formation + Delta-G solvation = -1.762240 kcal Electronic energy + Delta-G solvation = -29340.948987 eV Core-core repulsion = 25118.565485 eV Total energy + Delta-G solvation = -4222.383502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.40090 -40.84699 -39.95638 -39.14591 -36.39631 -35.07045 -32.91079 -31.79888 -31.71621 -30.78654 -29.57062 -27.61814 -26.19923 -25.62164 -24.03343 -23.62632 -22.95932 -21.95881 -20.42943 -20.15754 -18.72672 -18.27700 -17.93139 -16.98921 -16.88818 -16.47021 -16.12185 -16.02909 -15.84033 -15.11892 -14.98412 -14.77139 -14.64657 -14.26232 -14.13719 -14.01265 -13.82056 -13.53298 -13.09690 -13.03393 -12.77215 -12.74556 -12.51353 -12.43168 -12.11900 -11.93865 -11.84814 -11.56198 -11.45298 -11.08531 -10.94318 -10.53849 -10.32396 -10.20798 -9.88397 -9.72231 -9.68938 -9.37064 -9.28969 -9.21155 -8.62915 -8.58223 -7.92069 -6.08551 -4.06741 0.46373 0.65942 2.44721 3.05411 3.11487 3.24191 3.32967 3.34780 3.70689 3.86369 4.11389 4.14927 4.33904 4.34891 4.38817 4.45336 4.64036 4.67884 4.69245 4.88888 5.04194 5.14362 5.18912 5.23719 5.26026 5.36017 5.41467 5.46888 5.55555 5.62422 5.65785 5.75681 5.83363 5.87354 5.94690 5.95079 6.07924 6.14617 6.18790 6.20603 6.30179 6.31259 6.42575 6.51910 6.76764 6.90189 7.28043 7.72639 7.81483 7.84052 8.47955 8.57547 8.99881 9.52703 11.04638 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.001744 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.548095 B =16052.681989 C =16492.542789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.512 4.512 8 H 0.080 0.920 9 C 0.130 3.870 10 N -0.466 5.466 11 C 0.013 3.987 12 C -0.107 4.107 13 C 0.042 3.958 14 C -0.119 4.119 15 C 0.103 3.897 16 N -0.634 5.634 17 C 0.722 3.278 18 O -0.587 6.587 19 N -0.745 5.745 20 C 0.181 3.819 21 C -0.118 4.118 22 C -0.069 4.069 23 C -0.156 4.156 24 C 0.104 3.896 25 F -0.139 7.139 26 C -0.156 4.156 27 C -0.070 4.070 28 C 0.157 3.843 29 H 0.264 0.736 30 H 0.030 0.970 31 H -0.010 1.010 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.396 0.604 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.070 0.930 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.129 -16.200 -7.755 32.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.550 4.550 8 H 0.098 0.902 9 C 0.002 3.998 10 N -0.188 5.188 11 C -0.117 4.117 12 C -0.108 4.108 13 C -0.087 4.087 14 C -0.158 4.158 15 C -0.020 4.020 16 N -0.372 5.372 17 C 0.424 3.576 18 O -0.465 6.465 19 N -0.401 5.401 20 C 0.058 3.942 21 C -0.118 4.118 22 C -0.088 4.088 23 C -0.175 4.175 24 C 0.085 3.915 25 F -0.118 7.118 26 C -0.175 4.175 27 C -0.088 4.088 28 C 0.035 3.965 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.008 0.992 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.230 0.770 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.154 0.846 47 H 0.088 0.912 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 26.405 -16.849 -6.386 31.967 hybrid contribution 1.183 1.748 -1.304 2.481 sum 27.588 -15.101 -7.690 32.377 Atomic orbital electron populations 1.69892 1.06138 1.26876 1.50844 1.24921 0.94744 0.98885 0.94758 0.86849 0.80398 0.84024 0.78407 1.20357 1.21101 1.19193 1.20970 0.88593 0.94810 1.50614 0.90238 1.20661 0.97663 0.86017 0.95423 1.68582 1.02986 1.18233 1.29018 1.23684 0.94216 0.95826 0.97936 1.22585 0.98034 0.94996 0.95211 1.23418 0.93546 0.98294 0.93464 1.22478 0.96051 0.99353 0.97886 1.22018 0.98125 0.93648 0.88232 1.47726 1.16905 1.38963 1.33601 1.15384 0.80374 0.79814 0.82054 1.90953 1.71126 1.54561 1.29830 1.45142 1.14739 1.42971 1.37291 1.19983 0.86545 0.91936 0.95777 1.19999 0.95672 0.98317 0.97848 1.21034 0.91272 0.97553 0.98921 1.21199 0.99209 1.00115 0.96929 1.17815 0.80881 0.98354 0.94446 1.91519 1.42279 1.95019 1.82951 1.21190 0.92476 1.01340 1.02488 1.21018 0.96639 0.97074 0.94096 1.21662 0.80675 0.92446 1.01741 0.92629 0.95187 0.99209 0.90235 0.91835 0.90806 0.89723 0.89913 0.90013 0.91904 0.91954 0.76990 0.90462 0.90438 0.84555 0.84449 0.84474 0.84603 0.91171 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.51 -14.44 9.39 -34.44 -0.32 -14.76 16 8 H 0.08 2.45 8.04 -52.49 -0.42 2.03 16 9 C 0.13 3.09 3.64 -4.97 -0.02 3.07 16 10 N -0.47 -9.48 6.25 -248.24 -1.55 -11.04 16 11 C 0.01 0.20 7.30 -3.39 -0.02 0.18 16 12 C -0.11 -1.46 0.99 -154.67 -0.15 -1.61 16 13 C 0.04 0.73 6.83 -3.39 -0.02 0.70 16 14 C -0.12 -1.20 6.35 -25.55 -0.16 -1.36 16 15 C 0.10 0.91 6.16 -2.85 -0.02 0.89 16 16 N -0.63 -7.65 3.34 -176.52 -0.59 -8.24 16 17 C 0.72 9.44 8.49 -86.91 -0.74 8.70 16 18 O -0.59 -10.16 16.62 5.29 0.09 -10.08 16 19 N -0.74 -6.65 5.51 -66.41 -0.37 -7.02 16 20 C 0.18 1.39 5.80 -5.19 -0.03 1.36 16 21 C -0.12 -0.71 5.25 -104.62 -0.55 -1.26 16 22 C -0.07 -0.39 9.70 -39.59 -0.38 -0.77 16 23 C -0.16 -0.92 10.03 -39.51 -0.40 -1.32 16 24 C 0.10 0.71 7.30 -39.42 -0.29 0.43 16 25 F -0.14 -1.11 17.27 2.25 0.04 -1.07 16 26 C -0.16 -0.90 10.03 -39.51 -0.40 -1.29 16 27 C -0.07 -0.38 9.70 -39.59 -0.38 -0.76 16 28 C 0.16 2.19 6.31 -3.03 -0.02 2.17 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 31 H -0.01 -0.23 7.15 -51.93 -0.37 -0.60 16 32 H 0.08 1.26 8.13 -51.93 -0.42 0.83 16 33 H 0.06 0.97 7.71 -51.93 -0.40 0.56 16 34 H 0.07 1.30 7.79 -51.93 -0.40 0.89 16 35 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 36 H 0.08 0.77 7.99 -51.93 -0.41 0.35 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.40 2.74 7.44 -40.82 -0.30 2.44 16 41 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 42 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 43 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 45 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 46 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 47 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.09 1.44 8.00 -51.93 -0.42 1.02 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -33.95 396.74 -11.64 -45.59 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.34 Total: -0.36 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -4.00 Total: -3.75 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -1.73 Total: -52.91 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.95 -11.64 -45.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.831 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds