Wall clock time and date at job start Wed Apr 1 2020 04:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99906 * 2 1 4 4 H 1.48499 * 109.46921 * 239.99802 * 3 2 1 5 5 H 1.48500 * 109.47236 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47555 * 119.99909 * 3 2 1 7 7 C 1.37876 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99856 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99993 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46992 * 180.02562 * 9 7 2 11 11 C 1.48483 * 111.00186 * 69.87271 * 10 9 7 12 12 C 1.54328 * 104.59145 * 159.22158 * 11 10 9 13 13 C 1.54138 * 105.19313 * 335.59545 * 12 11 10 14 14 H 1.09001 * 111.47318 * 239.37675 * 13 12 11 15 15 C 1.50205 * 110.81992 * 185.64483 * 10 9 7 16 16 H 1.09001 * 113.36881 * 324.62620 * 15 10 9 17 17 C 1.54940 * 108.82023 * 92.17073 * 15 10 9 18 18 C 1.55047 * 101.85868 * 75.41127 * 17 15 10 19 19 N 1.46841 * 109.32383 * 115.72282 * 13 12 11 20 20 C 1.34773 * 125.60207 * 69.32958 * 19 13 12 21 21 O 1.21593 * 119.99894 * 359.97438 * 20 19 13 22 22 N 1.34777 * 120.00097 * 179.72660 * 20 19 13 23 23 C 1.46504 * 119.99854 * 180.27545 * 22 20 19 24 24 C 1.50701 * 109.46923 * 179.97438 * 23 22 20 25 25 C 1.38242 * 119.97536 * 269.72759 * 24 23 22 26 26 C 1.38195 * 120.02435 * 179.72843 * 25 24 23 27 27 C 1.38462 * 119.97572 * 0.51960 * 26 25 24 28 28 F 1.35098 * 120.02758 * 179.72865 * 27 26 25 29 29 C 1.38458 * 119.94544 * 359.75116 * 27 26 25 30 30 C 1.38199 * 119.97689 * 359.97438 * 29 27 26 31 31 H 0.96998 * 119.99938 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47208 * 59.99712 * 9 7 2 33 33 H 1.09001 * 109.47065 * 299.99772 * 9 7 2 34 34 H 1.08995 * 110.41282 * 40.44679 * 11 10 9 35 35 H 1.08996 * 110.41120 * 277.99468 * 11 10 9 36 36 H 1.09000 * 110.30094 * 216.66609 * 12 11 10 37 37 H 1.09005 * 110.30199 * 94.52164 * 12 11 10 38 38 H 1.08998 * 110.93702 * 193.74192 * 17 15 10 39 39 H 1.09004 * 110.93216 * 317.37425 * 17 15 10 40 40 H 1.09007 * 110.50811 * 278.46093 * 18 17 15 41 41 H 1.09001 * 110.36049 * 156.03614 * 18 17 15 42 42 H 0.97000 * 119.99736 * 0.26819 * 22 20 19 43 43 H 1.08998 * 109.46968 * 299.99782 * 23 22 20 44 44 H 1.08997 * 109.47198 * 59.99605 * 23 22 20 45 45 H 1.08002 * 119.98907 * 359.97259 * 25 24 23 46 46 H 1.08005 * 120.01452 * 180.29485 * 26 25 24 47 47 H 1.08004 * 120.01284 * 179.97438 * 29 27 26 48 48 H 1.08002 * 119.98473 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 2.9130 -3.7096 1.3039 12 6 3.4366 -5.1603 1.3582 13 6 2.5043 -5.9613 0.4280 14 1 1.9999 -6.7650 0.9645 15 6 1.4908 -4.9295 -0.1363 16 1 0.5264 -4.9523 0.3711 17 6 1.4123 -5.3003 -1.6386 18 6 2.8633 -5.7633 -1.9288 19 7 3.2781 -6.4774 -0.7082 20 6 4.2174 -7.4419 -0.6445 21 8 4.4844 -7.9609 0.4222 22 7 4.8571 -7.8345 -1.7639 23 6 5.8738 -8.8871 -1.6955 24 6 6.4315 -9.1371 -3.0730 25 6 5.8465 -10.0833 -3.8937 26 6 6.3536 -10.3094 -5.1592 27 6 7.4545 -9.5954 -5.6011 28 9 7.9545 -9.8195 -6.8360 29 6 8.0430 -8.6519 -4.7761 30 6 7.5307 -8.4235 -3.5131 31 1 -0.4850 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8903 34 1 2.2221 -3.5239 2.1261 35 1 3.7434 -3.0043 1.3371 36 1 3.3776 -5.5458 2.3760 37 1 4.4633 -5.2057 0.9948 38 1 0.7013 -6.1100 -1.8033 39 1 1.1545 -4.4297 -2.2417 40 1 3.5105 -4.9039 -2.1041 41 1 2.8825 -6.4352 -2.7868 42 1 4.6443 -7.4203 -2.6147 43 1 6.6774 -8.5733 -1.0293 44 1 5.4231 -9.8035 -1.3145 45 1 4.9905 -10.6433 -3.5472 46 1 5.8935 -11.0453 -5.8021 47 1 8.9021 -8.0947 -5.1195 48 1 7.9899 -7.6879 -2.8693 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277941443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:48 Heat of formation + Delta-G solvation = -30.565704 kcal Electronic energy + Delta-G solvation = -30033.492941 eV Core-core repulsion = 25809.860427 eV Total energy + Delta-G solvation = -4223.632513 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.30041 -40.54968 -39.64876 -38.38828 -35.11271 -34.93028 -32.82914 -31.60859 -31.58262 -31.34490 -29.68022 -27.07479 -26.39309 -25.70344 -23.51851 -22.88938 -22.38672 -21.86604 -20.72954 -19.77952 -19.38455 -18.19931 -17.93576 -16.85862 -16.39193 -16.28267 -15.98691 -15.91679 -15.50102 -15.08799 -14.77638 -14.53698 -14.21358 -14.13133 -14.07164 -13.91397 -13.72676 -13.39624 -13.10749 -12.69379 -12.61930 -12.51823 -12.16476 -11.97688 -11.88439 -11.45841 -11.35771 -11.25659 -11.04589 -10.90170 -10.63426 -10.57606 -10.43707 -10.34179 -10.07254 -9.84543 -9.58010 -9.23213 -9.20591 -9.09809 -8.47172 -8.32556 -7.49993 -6.06670 -4.08007 0.57569 0.76881 2.63584 3.18919 3.29917 3.31046 3.35280 3.38151 3.81130 4.06704 4.23090 4.25695 4.38906 4.45265 4.66855 4.78494 4.80102 4.82177 4.98248 5.24853 5.28148 5.30402 5.34511 5.36062 5.46901 5.56279 5.57908 5.66068 5.68301 5.72945 5.74614 5.84691 5.90226 6.06173 6.23714 6.26216 6.26990 6.35199 6.38185 6.41343 6.45407 6.64218 6.64728 7.06698 7.17418 7.25271 7.70497 7.92880 8.05027 8.11351 8.43500 8.67176 8.99407 9.56524 11.04245 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.002179 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.433077 B =12849.195791 C =13842.372008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.182 3.818 10 N -0.495 5.495 11 C 0.047 3.953 12 C -0.128 4.128 13 C 0.157 3.843 14 H 0.078 0.922 15 C 0.044 3.956 16 H 0.077 0.923 17 C -0.113 4.113 18 C 0.112 3.888 19 N -0.621 5.621 20 C 0.722 3.278 21 O -0.594 6.594 22 N -0.746 5.746 23 C 0.183 3.817 24 C -0.117 4.117 25 C -0.070 4.070 26 C -0.157 4.157 27 C 0.104 3.896 28 F -0.140 7.140 29 C -0.155 4.155 30 C -0.069 4.069 31 H 0.262 0.738 32 H 0.031 0.969 33 H -0.006 1.006 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.397 0.603 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.804 -20.463 -8.879 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.056 3.944 10 N -0.220 5.220 11 C -0.081 4.081 12 C -0.167 4.167 13 C 0.053 3.947 14 H 0.096 0.904 15 C -0.066 4.066 16 H 0.095 0.905 17 C -0.152 4.152 18 C -0.011 4.011 19 N -0.358 5.358 20 C 0.424 3.576 21 O -0.473 6.473 22 N -0.403 5.403 23 C 0.059 3.941 24 C -0.118 4.118 25 C -0.089 4.089 26 C -0.175 4.175 27 C 0.084 3.916 28 F -0.118 7.118 29 C -0.174 4.174 30 C -0.087 4.087 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.011 0.989 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.232 0.768 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.153 0.847 46 H 0.155 0.845 47 H 0.155 0.845 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.290 -20.681 -8.564 25.070 hybrid contribution -0.179 1.110 -0.084 1.127 sum 11.111 -19.571 -8.648 24.109 Atomic orbital electron populations 1.69941 1.06030 1.26912 1.50914 1.24977 0.94860 0.99292 0.95418 0.86568 0.79444 0.82785 0.78651 1.20200 1.21374 1.20298 1.21059 0.93402 0.89855 1.50201 0.92076 1.19887 0.90396 0.87823 0.96262 1.66048 1.25484 1.00826 1.29642 1.22901 0.98707 0.94842 0.91677 1.22680 0.99697 0.95491 0.98846 1.22057 0.91393 0.94753 0.86543 0.90382 1.23943 0.95590 0.91401 0.95616 0.90535 1.22596 0.94907 1.01216 0.96462 1.22237 0.96807 0.95841 0.86180 1.47566 1.39521 1.38168 1.10529 1.15363 0.78906 0.79415 0.83885 1.90911 1.68759 1.59449 1.28136 1.45150 1.42933 1.42470 1.09708 1.19945 0.90735 0.91189 0.92223 1.20006 0.97106 0.98027 0.96643 1.21003 0.98879 0.96572 0.92403 1.21176 0.96839 1.01798 0.97717 1.17809 0.95012 0.97914 0.80816 1.91515 1.86727 1.93742 1.39830 1.21198 1.02133 0.99305 0.94787 1.21038 0.94899 0.97900 0.94875 0.92858 0.95047 0.98868 0.94328 0.90361 0.91642 0.91194 0.91365 0.89037 0.90287 0.92191 0.76843 0.90587 0.90665 0.84653 0.84523 0.84455 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.04 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.77 8.81 -34.44 -0.30 -14.08 16 8 H 0.06 1.66 7.60 -52.49 -0.40 1.26 16 9 C 0.18 4.49 4.61 -4.98 -0.02 4.46 16 10 N -0.49 -9.94 4.77 -220.57 -1.05 -10.99 16 11 C 0.05 0.90 5.97 -2.25 -0.01 0.88 16 12 C -0.13 -2.11 6.45 -25.44 -0.16 -2.28 16 13 C 0.16 2.45 3.67 -65.95 -0.24 2.21 16 14 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 15 C 0.04 0.72 3.39 -63.64 -0.22 0.51 16 16 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 17 C -0.11 -1.57 6.72 -24.63 -0.17 -1.74 16 18 C 0.11 1.43 6.43 -2.48 -0.02 1.41 16 19 N -0.62 -8.89 2.88 -167.54 -0.48 -9.37 16 20 C 0.72 10.51 8.14 -86.92 -0.71 9.80 16 21 O -0.59 -10.66 16.49 5.28 0.09 -10.57 16 22 N -0.75 -7.92 5.51 -66.41 -0.37 -8.29 16 23 C 0.18 1.63 5.80 -5.19 -0.03 1.60 16 24 C -0.12 -0.85 5.25 -104.62 -0.55 -1.40 16 25 C -0.07 -0.46 9.70 -39.60 -0.38 -0.84 16 26 C -0.16 -1.07 10.03 -39.51 -0.40 -1.47 16 27 C 0.10 0.83 7.30 -39.42 -0.29 0.54 16 28 F -0.14 -1.26 17.27 2.25 0.04 -1.22 16 29 C -0.16 -1.11 10.03 -39.51 -0.40 -1.51 16 30 C -0.07 -0.48 9.70 -39.59 -0.38 -0.86 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.03 0.82 8.02 -51.93 -0.42 0.40 16 33 H -0.01 -0.17 7.88 -51.93 -0.41 -0.58 16 34 H 0.04 0.76 7.82 -51.93 -0.41 0.35 16 35 H 0.08 1.56 7.93 -51.93 -0.41 1.15 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.22 7.71 -51.93 -0.40 0.82 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.38 8.03 -51.93 -0.42 0.97 16 40 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 41 H 0.06 0.59 7.21 -51.93 -0.37 0.22 16 42 H 0.40 3.61 6.90 -40.82 -0.28 3.33 16 43 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 44 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 45 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 47 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 48 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 394.95 15.07 5.95 5.95 Total: -1.00 -31.65 394.95 -11.77 -43.42 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.29 Total: 1.42 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -4.38 Total: -1.32 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -1.16 Total: -53.96 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.65 -11.77 -43.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.857 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds