Wall clock time and date at job start Wed Apr 1 2020 04:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99906 * 2 1 4 4 H 1.48499 * 109.46921 * 239.99802 * 3 2 1 5 5 H 1.48500 * 109.47236 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47555 * 119.99909 * 3 2 1 7 7 C 1.37876 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99856 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99993 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46992 * 180.02562 * 9 7 2 11 11 C 1.48483 * 111.00186 * 69.87271 * 10 9 7 12 12 C 1.54328 * 104.59145 * 159.22158 * 11 10 9 13 13 C 1.54138 * 105.19313 * 335.59545 * 12 11 10 14 14 H 1.09001 * 111.47318 * 239.37675 * 13 12 11 15 15 C 1.50205 * 110.81992 * 185.64483 * 10 9 7 16 16 H 1.09001 * 113.36881 * 324.62620 * 15 10 9 17 17 C 1.54940 * 108.82023 * 92.17073 * 15 10 9 18 18 C 1.55047 * 101.85868 * 75.41127 * 17 15 10 19 19 N 1.46841 * 109.32383 * 115.72282 * 13 12 11 20 20 C 1.34773 * 125.60207 * 69.32958 * 19 13 12 21 21 O 1.21593 * 119.99894 * 359.97438 * 20 19 13 22 22 N 1.34777 * 120.00097 * 179.72660 * 20 19 13 23 23 C 1.46504 * 119.99854 * 180.27545 * 22 20 19 24 24 C 1.50701 * 109.46923 * 179.97438 * 23 22 20 25 25 C 1.38242 * 119.97536 * 269.72759 * 24 23 22 26 26 C 1.38195 * 120.02435 * 179.72843 * 25 24 23 27 27 C 1.38462 * 119.97572 * 0.51960 * 26 25 24 28 28 F 1.35098 * 120.02758 * 179.72865 * 27 26 25 29 29 C 1.38458 * 119.94544 * 359.75116 * 27 26 25 30 30 C 1.38199 * 119.97689 * 359.97438 * 29 27 26 31 31 H 0.96998 * 119.99938 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47208 * 59.99712 * 9 7 2 33 33 H 1.09001 * 109.47065 * 299.99772 * 9 7 2 34 34 H 1.08995 * 110.41282 * 40.44679 * 11 10 9 35 35 H 1.08996 * 110.41120 * 277.99468 * 11 10 9 36 36 H 1.09000 * 110.30094 * 216.66609 * 12 11 10 37 37 H 1.09005 * 110.30199 * 94.52164 * 12 11 10 38 38 H 1.08998 * 110.93702 * 193.74192 * 17 15 10 39 39 H 1.09004 * 110.93216 * 317.37425 * 17 15 10 40 40 H 1.09007 * 110.50811 * 278.46093 * 18 17 15 41 41 H 1.09001 * 110.36049 * 156.03614 * 18 17 15 42 42 H 0.97000 * 119.99736 * 0.26819 * 22 20 19 43 43 H 1.08998 * 109.46968 * 299.99782 * 23 22 20 44 44 H 1.08997 * 109.47198 * 59.99605 * 23 22 20 45 45 H 1.08002 * 119.98907 * 359.97259 * 25 24 23 46 46 H 1.08005 * 120.01452 * 180.29485 * 26 25 24 47 47 H 1.08004 * 120.01284 * 179.97438 * 29 27 26 48 48 H 1.08002 * 119.98473 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 2.9130 -3.7096 1.3039 12 6 3.4366 -5.1603 1.3582 13 6 2.5043 -5.9613 0.4280 14 1 1.9999 -6.7650 0.9645 15 6 1.4908 -4.9295 -0.1363 16 1 0.5264 -4.9523 0.3711 17 6 1.4123 -5.3003 -1.6386 18 6 2.8633 -5.7633 -1.9288 19 7 3.2781 -6.4774 -0.7082 20 6 4.2174 -7.4419 -0.6445 21 8 4.4844 -7.9609 0.4222 22 7 4.8571 -7.8345 -1.7639 23 6 5.8738 -8.8871 -1.6955 24 6 6.4315 -9.1371 -3.0730 25 6 5.8465 -10.0833 -3.8937 26 6 6.3536 -10.3094 -5.1592 27 6 7.4545 -9.5954 -5.6011 28 9 7.9545 -9.8195 -6.8360 29 6 8.0430 -8.6519 -4.7761 30 6 7.5307 -8.4235 -3.5131 31 1 -0.4850 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8903 34 1 2.2221 -3.5239 2.1261 35 1 3.7434 -3.0043 1.3371 36 1 3.3776 -5.5458 2.3760 37 1 4.4633 -5.2057 0.9948 38 1 0.7013 -6.1100 -1.8033 39 1 1.1545 -4.4297 -2.2417 40 1 3.5105 -4.9039 -2.1041 41 1 2.8825 -6.4352 -2.7868 42 1 4.6443 -7.4203 -2.6147 43 1 6.6774 -8.5733 -1.0293 44 1 5.4231 -9.8035 -1.3145 45 1 4.9905 -10.6433 -3.5472 46 1 5.8935 -11.0453 -5.8021 47 1 8.9021 -8.0947 -5.1195 48 1 7.9899 -7.6879 -2.8693 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277941443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:47 Heat of formation + Delta-G solvation = -49.470249 kcal Electronic energy + Delta-G solvation = -30034.312703 eV Core-core repulsion = 25809.860427 eV Total energy + Delta-G solvation = -4224.452276 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.92382 -41.71249 -40.37215 -39.53761 -36.56739 -35.86542 -34.75611 -32.88615 -32.35054 -32.11987 -30.98539 -28.38729 -28.04039 -26.70136 -24.32126 -24.03404 -23.91576 -22.55506 -22.07256 -21.10905 -20.59157 -19.16572 -18.63775 -18.40867 -17.51626 -17.37840 -16.98933 -16.62372 -16.56985 -16.43068 -15.94970 -15.78940 -15.64557 -15.21906 -14.94524 -14.79684 -14.58385 -14.46330 -14.34180 -14.00374 -13.95481 -13.53530 -13.34580 -13.26539 -12.94915 -12.76821 -12.66458 -12.56058 -12.45106 -12.20009 -12.06561 -11.96881 -11.93254 -11.80840 -11.72000 -11.28035 -11.19572 -10.59107 -10.21129 -10.07868 -9.69109 -9.43960 -9.19815 -8.19606 -6.28489 -0.00226 0.26230 1.41636 1.43514 1.51506 1.65360 2.17545 2.40693 2.56584 3.09169 3.13507 3.26395 3.29562 3.50820 3.61973 3.67906 3.74927 3.96709 3.98523 4.16532 4.21193 4.28426 4.30867 4.32260 4.50486 4.52618 4.65301 4.69734 4.74986 4.83771 4.91281 4.97784 4.98391 5.04321 5.06647 5.12966 5.14793 5.17699 5.21003 5.22226 5.34028 5.38798 5.47547 5.51127 5.65338 5.87663 6.01373 6.12800 6.23118 6.50756 6.86759 7.01726 7.40964 7.58070 8.91150 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.002179 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.433077 B =12849.195791 C =13842.372008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.200 3.800 10 N -0.499 5.499 11 C 0.048 3.952 12 C -0.115 4.115 13 C 0.162 3.838 14 H 0.087 0.913 15 C 0.038 3.962 16 H 0.075 0.925 17 C -0.108 4.108 18 C 0.117 3.883 19 N -0.622 5.622 20 C 0.720 3.280 21 O -0.630 6.630 22 N -0.730 5.730 23 C 0.186 3.814 24 C -0.117 4.117 25 C -0.067 4.067 26 C -0.157 4.157 27 C 0.087 3.913 28 F -0.149 7.149 29 C -0.160 4.160 30 C -0.071 4.071 31 H 0.264 0.736 32 H 0.013 0.987 33 H -0.036 1.036 34 H 0.028 0.972 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.407 0.593 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.152 0.848 46 H 0.152 0.848 47 H 0.148 0.852 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.620 -21.506 -9.951 26.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.223 5.223 11 C -0.080 4.080 12 C -0.154 4.154 13 C 0.057 3.943 14 H 0.105 0.895 15 C -0.071 4.071 16 H 0.092 0.908 17 C -0.146 4.146 18 C -0.005 4.005 19 N -0.358 5.358 20 C 0.422 3.578 21 O -0.511 6.511 22 N -0.387 5.387 23 C 0.062 3.938 24 C -0.118 4.118 25 C -0.085 4.085 26 C -0.176 4.176 27 C 0.067 3.933 28 F -0.128 7.128 29 C -0.178 4.178 30 C -0.089 4.089 31 H 0.073 0.927 32 H 0.031 0.969 33 H -0.018 1.018 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.116 0.884 42 H 0.243 0.757 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.170 0.830 46 H 0.170 0.830 47 H 0.166 0.834 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.128 -21.740 -9.679 26.710 hybrid contribution -0.422 1.375 0.249 1.460 sum 11.706 -20.365 -9.430 25.312 Atomic orbital electron populations 1.70057 1.07511 1.27861 1.51763 1.25824 0.95695 1.02887 0.94950 0.85525 0.78232 0.78422 0.78969 1.19345 1.20885 1.19666 1.21368 0.93380 0.91231 1.49987 0.92478 1.19504 0.90288 0.88988 0.93879 1.65961 1.24817 1.01372 1.30168 1.22851 0.97898 0.96416 0.90866 1.22554 0.99224 0.93740 0.99921 1.21924 0.90975 0.94504 0.86888 0.89493 1.24048 0.95476 0.89575 0.97996 0.90763 1.22602 0.96503 1.01575 0.93911 1.22250 0.95420 0.96061 0.86754 1.47530 1.39560 1.38231 1.10505 1.15501 0.78883 0.79159 0.84240 1.90889 1.69835 1.60658 1.29748 1.45071 1.42312 1.42283 1.08998 1.19976 0.90075 0.90567 0.93157 1.19880 0.97382 0.98616 0.95912 1.21170 0.99116 0.96211 0.92037 1.21371 0.96407 1.01779 0.98007 1.18077 0.95763 0.98711 0.80708 1.91490 1.86955 1.93886 1.40479 1.21349 1.02473 0.99246 0.94751 1.21157 0.94846 0.98023 0.94909 0.92724 0.96914 1.01783 0.95398 0.91751 0.90490 0.91972 0.88609 0.90457 0.91859 0.88408 0.75681 0.91178 0.90536 0.83027 0.83029 0.83414 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.86 13.29 21.45 0.28 -54.58 16 2 C 0.00 0.26 5.46 84.65 0.46 0.73 16 3 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.52 -28.88 8.81 25.60 0.23 -28.66 16 8 H 0.06 3.14 7.60 -2.91 -0.02 3.12 16 9 C 0.20 10.19 4.61 85.56 0.39 10.58 16 10 N -0.50 -20.34 4.77 -851.74 -4.06 -24.41 16 11 C 0.05 1.87 5.97 86.45 0.52 2.38 16 12 C -0.12 -3.75 6.45 31.43 0.20 -3.55 16 13 C 0.16 4.86 3.67 46.09 0.17 5.03 16 14 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 15 C 0.04 1.24 3.39 45.71 0.16 1.39 16 16 H 0.07 2.47 8.05 -2.39 -0.02 2.45 16 17 C -0.11 -2.81 6.72 31.96 0.21 -2.60 16 18 C 0.12 2.72 6.43 86.91 0.56 3.28 16 19 N -0.62 -16.62 2.88 -802.22 -2.31 -18.93 16 20 C 0.72 19.57 8.14 179.06 1.46 21.03 16 21 O -0.63 -21.76 16.49 -4.01 -0.07 -21.82 16 22 N -0.73 -13.77 5.51 -482.29 -2.66 -16.43 16 23 C 0.19 2.93 5.80 85.63 0.50 3.43 16 24 C -0.12 -1.45 5.25 -19.86 -0.10 -1.55 16 25 C -0.07 -0.71 9.70 22.26 0.22 -0.50 16 26 C -0.16 -1.82 10.03 22.31 0.22 -1.60 16 27 C 0.09 1.26 7.30 22.38 0.16 1.42 16 28 F -0.15 -2.56 17.27 44.97 0.78 -1.78 16 29 C -0.16 -2.04 10.03 22.31 0.22 -1.81 16 30 C -0.07 -0.86 9.70 22.26 0.22 -0.64 16 31 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.01 0.69 8.02 -2.39 -0.02 0.67 16 33 H -0.04 -1.98 7.88 -2.39 -0.02 -2.00 16 34 H 0.03 1.13 7.82 -2.39 -0.02 1.11 16 35 H 0.06 2.63 7.93 -2.39 -0.02 2.61 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.06 2.13 7.71 -2.38 -0.02 2.11 16 38 H 0.10 2.00 8.14 -2.39 -0.02 1.99 16 39 H 0.08 2.28 8.03 -2.39 -0.02 2.26 16 40 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.10 1.56 7.21 -2.39 -0.02 1.54 16 42 H 0.41 6.15 6.90 -92.71 -0.64 5.51 16 43 H 0.07 1.22 8.09 -2.39 -0.02 1.21 16 44 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 45 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 47 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 48 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -68.76 394.95 0.11 -68.65 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.33 Total: 15.13 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.79 Total: 8.37 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -8.75 Total: -114.34 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.07 Total: -21.82 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.78 Total: -1.78 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -68.76 0.11 -68.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.175 kcal (2) G-P(sol) polarization free energy of solvation -68.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds