Wall clock time and date at job start Wed Apr 1 2020 04:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99990 * 2 1 4 4 H 1.48504 * 109.47426 * 270.00115 * 3 2 1 5 5 H 1.48500 * 109.47242 * 30.00074 * 3 2 1 6 6 H 1.48503 * 109.47387 * 150.00250 * 3 2 1 7 7 C 1.37873 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00540 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47691 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47493 * 180.02562 * 10 9 7 12 12 C 1.48118 * 111.00293 * 189.99954 * 11 10 9 13 13 C 1.53129 * 85.89967 * 222.96294 * 12 11 10 14 14 C 1.52970 * 121.07820 * 258.11937 * 13 12 11 15 15 C 1.53651 * 82.96142 * 259.37228 * 14 13 12 16 16 N 1.46179 * 121.14491 * 148.39319 * 13 12 11 17 17 C 1.34784 * 136.19579 * 279.81504 * 16 13 12 18 18 O 1.21583 * 119.99855 * 359.35877 * 17 16 13 19 19 N 1.34771 * 119.99547 * 179.62867 * 17 16 13 20 20 C 1.46506 * 119.99515 * 179.97438 * 19 17 16 21 21 C 1.50699 * 109.46931 * 180.02562 * 20 19 17 22 22 C 1.38248 * 119.97666 * 269.72967 * 21 20 19 23 23 C 1.38199 * 120.02749 * 179.72788 * 22 21 20 24 24 C 1.38458 * 119.97444 * 0.56754 * 23 22 21 25 25 F 1.35094 * 120.02770 * 179.68593 * 24 23 22 26 26 C 1.38464 * 119.94498 * 359.70494 * 24 23 22 27 27 C 1.38194 * 119.97439 * 359.97438 * 26 24 23 28 28 C 1.48122 * 111.00298 * 90.42067 * 11 10 9 29 29 H 0.97006 * 119.99962 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47048 * 60.00011 * 9 7 2 31 31 H 1.09005 * 109.47027 * 300.00440 * 9 7 2 32 32 H 1.08998 * 109.47040 * 59.99873 * 10 9 7 33 33 H 1.09005 * 109.46965 * 300.00136 * 10 9 7 34 34 H 1.08997 * 113.81233 * 108.71592 * 12 11 10 35 35 H 1.09005 * 113.80445 * 337.20960 * 12 11 10 36 36 H 1.09003 * 114.50083 * 145.85240 * 14 13 12 37 37 H 1.09002 * 114.16749 * 12.87319 * 14 13 12 38 38 H 1.09000 * 113.43033 * 219.66215 * 15 14 13 39 39 H 1.08999 * 113.47339 * 89.35286 * 15 14 13 40 40 H 0.96999 * 120.00409 * 0.02562 * 19 17 16 41 41 H 1.08996 * 109.47564 * 300.00635 * 20 19 17 42 42 H 1.09000 * 109.46872 * 60.00432 * 20 19 17 43 43 H 1.08006 * 119.98367 * 359.97438 * 22 21 20 44 44 H 1.08000 * 120.01178 * 180.25032 * 23 22 21 45 45 H 1.08000 * 120.00650 * 179.97438 * 26 24 23 46 46 H 1.08003 * 119.98245 * 179.97438 * 27 26 24 47 47 H 1.09005 * 113.80521 * 22.79059 * 28 11 10 48 48 H 1.09004 * 113.80631 * 251.28369 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9342 -0.0012 12 6 2.4246 -6.0749 0.2389 13 6 1.6505 -6.7871 -0.8740 14 6 0.5921 -7.8426 -0.5489 15 6 1.7242 -8.8164 -0.9109 16 7 2.3063 -7.7560 -1.7503 17 6 3.0977 -7.7024 -2.8401 18 8 3.4073 -6.6264 -3.3141 19 7 3.5413 -8.8415 -3.4073 20 6 4.4011 -8.7832 -4.5921 21 6 4.7540 -10.1826 -5.0260 22 6 5.8872 -10.7959 -4.5251 23 6 6.2089 -12.0813 -4.9180 24 6 5.4020 -12.7505 -5.8225 25 9 5.7189 -14.0046 -6.2121 26 6 4.2704 -12.1330 -6.3278 27 6 3.9472 -10.8502 -5.9284 28 6 1.2546 -5.3987 -1.3842 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6246 -2.5570 0.8897 32 1 2.8719 -3.6044 0.8894 33 1 2.8719 -3.6043 -0.8906 34 1 2.3066 -6.5343 1.2203 35 1 3.4644 -5.8661 -0.0126 36 1 -0.2531 -7.8621 -1.2370 37 1 0.2959 -7.8694 0.4997 38 1 1.3856 -9.6825 -1.4795 39 1 2.3503 -9.0893 -0.0614 40 1 3.2908 -9.7000 -3.0317 41 1 3.8735 -8.2751 -5.3993 42 1 5.3128 -8.2358 -4.3529 43 1 6.5193 -10.2718 -3.8235 44 1 7.0920 -12.5617 -4.5234 45 1 3.6405 -12.6540 -7.0338 46 1 3.0647 -10.3683 -6.3228 47 1 1.9444 -4.9875 -2.1212 48 1 0.2103 -5.3227 -1.6875 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277945173.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:42 Heat of formation + Delta-G solvation = 27.689430 kcal Electronic energy + Delta-G solvation = -29199.172328 eV Core-core repulsion = 24978.065946 eV Total energy + Delta-G solvation = -4221.106381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.40369 -41.29118 -39.93751 -38.83051 -36.84427 -35.00810 -33.23185 -31.71539 -31.70192 -30.53819 -29.47433 -26.71140 -26.05586 -25.87614 -23.76015 -23.62412 -22.61228 -21.97607 -21.27551 -19.97465 -19.34959 -18.19338 -17.09332 -16.96022 -16.66363 -16.35208 -16.08640 -16.04847 -15.81110 -15.20327 -14.99685 -14.88310 -14.46605 -14.39987 -14.14074 -14.03148 -13.88633 -13.41489 -13.00537 -12.83923 -12.61576 -12.48856 -12.43313 -12.33792 -12.06116 -11.97434 -11.63614 -11.56222 -11.11053 -11.02746 -10.81575 -10.58379 -10.30880 -10.14706 -9.69201 -9.68866 -9.36342 -9.32262 -9.20841 -9.04962 -8.63548 -8.30099 -8.22261 -5.93514 -3.95757 0.46253 0.66069 2.30139 3.01248 3.11025 3.36516 3.42114 3.45775 3.70445 3.75232 4.12023 4.15012 4.20441 4.33857 4.34891 4.50302 4.56903 4.68396 4.69571 4.89564 4.94003 5.10625 5.15361 5.18876 5.27035 5.36440 5.42271 5.47309 5.55519 5.58066 5.64722 5.67112 5.73765 5.81401 5.92491 5.95652 5.99293 6.16285 6.23486 6.28260 6.30391 6.48223 6.85628 7.02369 7.12707 7.44811 7.81106 7.94158 7.95301 8.13174 8.49298 8.51151 9.11375 9.67475 11.17853 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.001747 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.858583 B =16026.625256 C =16844.285779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.034 3.966 10 C 0.032 3.968 11 N -0.471 5.471 12 C 0.006 3.994 13 C 0.148 3.852 14 C -0.118 4.118 15 C 0.099 3.901 16 N -0.653 5.653 17 C 0.732 3.268 18 O -0.579 6.579 19 N -0.744 5.744 20 C 0.181 3.819 21 C -0.117 4.117 22 C -0.069 4.069 23 C -0.156 4.156 24 C 0.104 3.896 25 F -0.139 7.139 26 C -0.156 4.156 27 C -0.069 4.069 28 C 0.011 3.989 29 H 0.260 0.740 30 H 0.015 0.985 31 H 0.024 0.976 32 H 0.059 0.941 33 H 0.033 0.967 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.395 0.605 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.086 0.914 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.538 -30.987 -8.568 33.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.004 4.004 10 C -0.096 4.096 11 N -0.194 5.194 12 C -0.124 4.124 13 C 0.061 3.939 14 C -0.156 4.156 15 C -0.024 4.024 16 N -0.392 5.392 17 C 0.436 3.564 18 O -0.455 6.455 19 N -0.400 5.400 20 C 0.058 3.942 21 C -0.118 4.118 22 C -0.088 4.088 23 C -0.175 4.175 24 C 0.085 3.915 25 F -0.118 7.118 26 C -0.175 4.175 27 C -0.088 4.088 28 C -0.118 4.118 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.228 0.772 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.155 0.845 46 H 0.154 0.846 47 H 0.104 0.896 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.258 -29.937 -8.715 32.013 hybrid contribution 1.319 0.207 -0.503 1.427 sum 8.577 -29.729 -9.218 32.286 Atomic orbital electron populations 1.69981 1.05993 1.26469 1.50782 1.24990 0.94839 0.99133 0.95366 0.86598 0.79817 0.83526 0.78064 1.20709 1.21210 1.19935 1.21213 0.92971 0.91144 1.50714 0.92858 1.18962 0.93802 0.89836 0.97787 1.22848 0.97193 0.90038 0.99505 1.68611 1.31858 1.01709 1.17248 1.24116 0.96753 0.93359 0.98192 1.23304 0.90688 0.90399 0.89461 1.23088 0.95623 0.93394 1.03503 1.22960 0.93468 0.92426 0.93564 1.48821 1.51981 1.11415 1.26962 1.15292 0.77615 0.84132 0.79405 1.90977 1.61896 1.27861 1.64795 1.45092 1.55100 1.07557 1.32237 1.19991 0.94897 0.91978 0.87370 1.19996 0.96201 0.96573 0.99005 1.21027 0.96070 0.93625 0.98075 1.21190 1.01070 0.95957 0.99265 1.17812 0.95917 0.80368 0.97411 1.91517 1.92604 1.38009 1.89640 1.21191 0.97215 0.96417 1.02648 1.21025 0.98913 0.93303 0.95542 1.24141 1.02932 0.91778 0.92986 0.93063 0.96613 0.95776 0.92256 0.94894 0.89067 0.91156 0.88226 0.88446 0.90865 0.89933 0.77166 0.90405 0.90450 0.84604 0.84465 0.84453 0.84572 0.89575 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.40 9.11 -34.45 -0.31 -15.71 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.92 5.28 -27.89 -0.15 0.77 16 10 C 0.03 0.72 4.73 -3.83 -0.02 0.70 16 11 N -0.47 -8.89 6.16 -243.11 -1.50 -10.38 16 12 C 0.01 0.09 7.83 -3.09 -0.02 0.07 16 13 C 0.15 1.98 1.60 -142.76 -0.23 1.75 16 14 C -0.12 -1.09 8.26 -26.41 -0.22 -1.31 16 15 C 0.10 0.76 8.29 -9.97 -0.08 0.67 16 16 N -0.65 -7.84 3.69 -183.42 -0.68 -8.52 16 17 C 0.73 10.00 8.79 -86.92 -0.76 9.24 16 18 O -0.58 -10.68 16.08 5.29 0.09 -10.60 16 19 N -0.74 -6.90 5.55 -66.41 -0.37 -7.27 16 20 C 0.18 1.50 5.80 -5.19 -0.03 1.47 16 21 C -0.12 -0.74 5.25 -104.62 -0.55 -1.29 16 22 C -0.07 -0.40 9.70 -39.59 -0.38 -0.79 16 23 C -0.16 -0.93 10.03 -39.51 -0.40 -1.33 16 24 C 0.10 0.72 7.30 -39.42 -0.29 0.43 16 25 F -0.14 -1.12 17.27 2.25 0.04 -1.08 16 26 C -0.16 -0.93 10.03 -39.51 -0.40 -1.32 16 27 C -0.07 -0.40 9.70 -39.60 -0.38 -0.78 16 28 C 0.01 0.19 7.66 -3.09 -0.02 0.17 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 33 H 0.03 0.76 7.38 -51.93 -0.38 0.38 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.13 7.92 -51.93 -0.41 0.71 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.39 2.75 8.19 -40.82 -0.33 2.42 16 41 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 42 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 43 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 46 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 47 H 0.09 1.76 6.60 -51.93 -0.34 1.41 16 48 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 405.47 15.07 6.11 6.11 Total: -1.00 -35.63 405.47 -12.28 -47.92 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.35 Total: -0.98 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -4.34 Total: -5.64 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -1.81 Total: -53.04 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.63 -12.28 -47.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277945173.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.605 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds