Wall clock time and date at job start Wed Apr 1 2020 04:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99990 * 2 1 4 4 H 1.48504 * 109.47426 * 270.00115 * 3 2 1 5 5 H 1.48500 * 109.47242 * 30.00074 * 3 2 1 6 6 H 1.48503 * 109.47387 * 150.00250 * 3 2 1 7 7 C 1.37873 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00540 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47691 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47493 * 180.02562 * 10 9 7 12 12 C 1.48118 * 111.00293 * 189.99954 * 11 10 9 13 13 C 1.53129 * 85.89967 * 222.96294 * 12 11 10 14 14 C 1.52970 * 121.07820 * 258.11937 * 13 12 11 15 15 C 1.53651 * 82.96142 * 259.37228 * 14 13 12 16 16 N 1.46179 * 121.14491 * 148.39319 * 13 12 11 17 17 C 1.34784 * 136.19579 * 279.81504 * 16 13 12 18 18 O 1.21583 * 119.99855 * 359.35877 * 17 16 13 19 19 N 1.34771 * 119.99547 * 179.62867 * 17 16 13 20 20 C 1.46506 * 119.99515 * 179.97438 * 19 17 16 21 21 C 1.50699 * 109.46931 * 180.02562 * 20 19 17 22 22 C 1.38248 * 119.97666 * 269.72967 * 21 20 19 23 23 C 1.38199 * 120.02749 * 179.72788 * 22 21 20 24 24 C 1.38458 * 119.97444 * 0.56754 * 23 22 21 25 25 F 1.35094 * 120.02770 * 179.68593 * 24 23 22 26 26 C 1.38464 * 119.94498 * 359.70494 * 24 23 22 27 27 C 1.38194 * 119.97439 * 359.97438 * 26 24 23 28 28 C 1.48122 * 111.00298 * 90.42067 * 11 10 9 29 29 H 0.97006 * 119.99962 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47048 * 60.00011 * 9 7 2 31 31 H 1.09005 * 109.47027 * 300.00440 * 9 7 2 32 32 H 1.08998 * 109.47040 * 59.99873 * 10 9 7 33 33 H 1.09005 * 109.46965 * 300.00136 * 10 9 7 34 34 H 1.08997 * 113.81233 * 108.71592 * 12 11 10 35 35 H 1.09005 * 113.80445 * 337.20960 * 12 11 10 36 36 H 1.09003 * 114.50083 * 145.85240 * 14 13 12 37 37 H 1.09002 * 114.16749 * 12.87319 * 14 13 12 38 38 H 1.09000 * 113.43033 * 219.66215 * 15 14 13 39 39 H 1.08999 * 113.47339 * 89.35286 * 15 14 13 40 40 H 0.96999 * 120.00409 * 0.02562 * 19 17 16 41 41 H 1.08996 * 109.47564 * 300.00635 * 20 19 17 42 42 H 1.09000 * 109.46872 * 60.00432 * 20 19 17 43 43 H 1.08006 * 119.98367 * 359.97438 * 22 21 20 44 44 H 1.08000 * 120.01178 * 180.25032 * 23 22 21 45 45 H 1.08000 * 120.00650 * 179.97438 * 26 24 23 46 46 H 1.08003 * 119.98245 * 179.97438 * 27 26 24 47 47 H 1.09005 * 113.80521 * 22.79059 * 28 11 10 48 48 H 1.09004 * 113.80631 * 251.28369 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9342 -0.0012 12 6 2.4246 -6.0749 0.2389 13 6 1.6505 -6.7871 -0.8740 14 6 0.5921 -7.8426 -0.5489 15 6 1.7242 -8.8164 -0.9109 16 7 2.3063 -7.7560 -1.7503 17 6 3.0977 -7.7024 -2.8401 18 8 3.4073 -6.6264 -3.3141 19 7 3.5413 -8.8415 -3.4073 20 6 4.4011 -8.7832 -4.5921 21 6 4.7540 -10.1826 -5.0260 22 6 5.8872 -10.7959 -4.5251 23 6 6.2089 -12.0813 -4.9180 24 6 5.4020 -12.7505 -5.8225 25 9 5.7189 -14.0046 -6.2121 26 6 4.2704 -12.1330 -6.3278 27 6 3.9472 -10.8502 -5.9284 28 6 1.2546 -5.3987 -1.3842 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6246 -2.5570 0.8897 32 1 2.8719 -3.6044 0.8894 33 1 2.8719 -3.6043 -0.8906 34 1 2.3066 -6.5343 1.2203 35 1 3.4644 -5.8661 -0.0126 36 1 -0.2531 -7.8621 -1.2370 37 1 0.2959 -7.8694 0.4997 38 1 1.3856 -9.6825 -1.4795 39 1 2.3503 -9.0893 -0.0614 40 1 3.2908 -9.7000 -3.0317 41 1 3.8735 -8.2751 -5.3993 42 1 5.3128 -8.2358 -4.3529 43 1 6.5193 -10.2718 -3.8235 44 1 7.0920 -12.5617 -4.5234 45 1 3.6405 -12.6540 -7.0338 46 1 3.0647 -10.3683 -6.3228 47 1 1.9444 -4.9875 -2.1212 48 1 0.2103 -5.3227 -1.6875 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277945173.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:41 Heat of formation + Delta-G solvation = 2.569796 kcal Electronic energy + Delta-G solvation = -29200.261597 eV Core-core repulsion = 24978.065946 eV Total energy + Delta-G solvation = -4222.195650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.94724 -42.36143 -40.62667 -39.77052 -38.04235 -35.89005 -35.39512 -32.76850 -32.15617 -32.14959 -30.31942 -28.35741 -27.28392 -26.77117 -25.36047 -24.06762 -23.55646 -22.92432 -22.35102 -21.60399 -20.26046 -18.69401 -18.61334 -18.09741 -17.59163 -17.51489 -17.04488 -16.68304 -16.63122 -16.60326 -16.35106 -15.92783 -15.83789 -15.36560 -14.94792 -14.73739 -14.63317 -14.47628 -14.28295 -14.13963 -13.86233 -13.68268 -13.46970 -13.31859 -13.29137 -13.02915 -12.89891 -12.63405 -12.50947 -12.45821 -12.23516 -12.00319 -11.85301 -11.55223 -11.44272 -11.26747 -10.96620 -10.58589 -10.31939 -10.11668 -9.84793 -9.71493 -9.54028 -8.22586 -6.34920 -0.04619 0.22649 1.37036 1.39595 1.41782 1.50735 2.06393 2.38064 2.49748 2.93795 3.09274 3.10079 3.23177 3.32663 3.50271 3.56305 3.70999 3.79599 3.93801 4.01549 4.15262 4.17361 4.26858 4.38684 4.43334 4.50218 4.56122 4.59666 4.62134 4.63190 4.69690 4.78521 4.93905 4.94384 4.95403 5.02456 5.10751 5.11397 5.18231 5.26949 5.28162 5.39217 5.41285 5.47144 5.69762 5.73845 5.83950 6.01517 6.21274 6.23168 6.80756 7.04997 7.33973 7.52955 8.89591 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.001747 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.858583 B =16026.625256 C =16844.285779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.056 0.944 9 C 0.043 3.957 10 C 0.051 3.949 11 N -0.483 5.483 12 C 0.011 3.989 13 C 0.153 3.847 14 C -0.106 4.106 15 C 0.109 3.891 16 N -0.658 5.658 17 C 0.724 3.276 18 O -0.638 6.638 19 N -0.723 5.723 20 C 0.184 3.816 21 C -0.116 4.116 22 C -0.069 4.069 23 C -0.156 4.156 24 C 0.089 3.911 25 F -0.148 7.148 26 C -0.156 4.156 27 C -0.068 4.068 28 C 0.000 4.000 29 H 0.265 0.735 30 H -0.017 1.017 31 H -0.001 1.001 32 H 0.065 0.935 33 H 0.016 0.984 34 H 0.126 0.874 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.410 0.590 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.147 0.853 47 H 0.049 0.951 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.114 -33.232 -7.747 35.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.588 4.588 8 H 0.075 0.925 9 C 0.006 3.994 10 C -0.077 4.077 11 N -0.205 5.205 12 C -0.119 4.119 13 C 0.066 3.934 14 C -0.144 4.144 15 C -0.012 4.012 16 N -0.395 5.395 17 C 0.427 3.573 18 O -0.519 6.519 19 N -0.379 5.379 20 C 0.060 3.940 21 C -0.117 4.117 22 C -0.087 4.087 23 C -0.175 4.175 24 C 0.070 3.930 25 F -0.127 7.127 26 C -0.175 4.175 27 C -0.087 4.087 28 C -0.130 4.130 29 H 0.074 0.926 30 H 0.002 0.998 31 H 0.018 0.982 32 H 0.084 0.916 33 H 0.034 0.966 34 H 0.144 0.856 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.246 0.754 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.165 0.835 44 H 0.169 0.831 45 H 0.169 0.831 46 H 0.165 0.835 47 H 0.067 0.933 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.829 -32.271 -7.878 34.129 hybrid contribution 1.103 0.869 -0.794 1.613 sum 8.932 -31.402 -8.672 33.780 Atomic orbital electron populations 1.70113 1.07776 1.27868 1.51118 1.25989 0.95847 1.03375 0.94435 0.85399 0.78678 0.78186 0.78469 1.19947 1.20117 1.18719 1.21615 0.93388 0.92456 1.51390 0.92547 1.18772 0.93981 0.91766 0.94902 1.22450 0.95765 0.90626 0.98898 1.68504 1.32653 1.01233 1.18118 1.24163 0.95378 0.91704 1.00611 1.23329 0.92181 0.89464 0.88455 1.23183 0.95224 0.91049 1.04969 1.23220 0.92288 0.91982 0.93706 1.48903 1.51334 1.12641 1.26669 1.15589 0.77668 0.84232 0.79787 1.90941 1.64060 1.30299 1.66597 1.44909 1.54141 1.06957 1.31904 1.19953 0.94135 0.93190 0.86679 1.19816 0.96809 0.95464 0.99620 1.21141 0.95898 0.93582 0.98099 1.21351 1.01367 0.95894 0.98891 1.18061 0.96637 0.80256 0.98093 1.91494 1.92741 1.38636 1.89823 1.21354 0.97085 0.96401 1.02646 1.21140 0.99158 0.93217 0.95178 1.24076 1.01824 0.95491 0.91599 0.92622 0.99823 0.98222 0.91635 0.96559 0.85633 0.92635 0.87649 0.86398 0.87607 0.87570 0.75367 0.91363 0.91406 0.83520 0.83104 0.83085 0.83477 0.93282 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.85 13.29 21.45 0.28 -58.56 16 2 C 0.00 0.10 5.46 84.65 0.46 0.57 16 3 Si 0.97 46.25 29.54 68.60 2.03 48.27 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.55 -33.53 9.11 25.60 0.23 -33.30 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.04 2.50 5.28 29.85 0.16 2.66 16 10 C 0.05 2.41 4.73 86.30 0.41 2.82 16 11 N -0.48 -18.67 6.16 -923.08 -5.68 -24.36 16 12 C 0.01 0.33 7.83 86.11 0.67 1.00 16 13 C 0.15 3.94 1.60 0.89 0.00 3.94 16 14 C -0.11 -1.61 8.26 30.80 0.25 -1.35 16 15 C 0.11 1.20 8.29 82.14 0.68 1.88 16 16 N -0.66 -14.74 3.69 -852.47 -3.15 -17.89 16 17 C 0.72 19.58 8.79 179.05 1.57 21.15 16 18 O -0.64 -24.70 16.08 -3.98 -0.06 -24.76 16 19 N -0.72 -12.46 5.55 -482.29 -2.68 -15.14 16 20 C 0.18 2.96 5.80 85.63 0.50 3.46 16 21 C -0.12 -1.31 5.25 -19.86 -0.10 -1.41 16 22 C -0.07 -0.68 9.70 22.26 0.22 -0.46 16 23 C -0.16 -1.60 10.03 22.31 0.22 -1.37 16 24 C 0.09 1.10 7.30 22.38 0.16 1.26 16 25 F -0.15 -2.21 17.27 44.97 0.78 -1.44 16 26 C -0.16 -1.59 10.03 22.31 0.22 -1.37 16 27 C -0.07 -0.67 9.70 22.26 0.22 -0.46 16 28 C 0.00 0.00 7.66 86.11 0.66 0.66 16 29 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 30 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 31 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 32 H 0.07 2.95 8.08 -2.39 -0.02 2.93 16 33 H 0.02 0.80 7.38 -2.38 -0.02 0.79 16 34 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.06 1.78 7.92 -2.38 -0.02 1.76 16 36 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 40 H 0.41 4.57 8.19 -92.71 -0.76 3.81 16 41 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 42 H 0.07 1.24 8.08 -2.39 -0.02 1.22 16 43 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 44 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 45 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 46 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 47 H 0.05 2.18 6.60 -2.38 -0.02 2.17 16 48 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -82.52 405.47 -1.73 -84.26 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.21 Total: 9.95 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 6.54 Total: -0.33 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -11.22 Total: -115.95 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.06 Total: -24.76 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.78 Total: -1.44 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -82.52 -1.73 -84.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277945173.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.825 kcal (2) G-P(sol) polarization free energy of solvation -82.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds