Wall clock time and date at job start Wed Apr 1 2020 05:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 119.99889 * 2 1 4 4 H 1.48497 * 109.47173 * 179.72400 * 3 2 1 5 5 H 1.48506 * 109.46866 * 299.71936 * 3 2 1 6 6 H 1.48501 * 109.47438 * 59.72056 * 3 2 1 7 7 C 1.38955 * 119.99820 * 179.71718 * 2 1 3 8 8 H 1.08000 * 119.99307 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99974 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99808 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00325 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47398 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99849 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.46873 * 179.97438 * 14 13 12 16 16 H 1.08995 * 110.43314 * 307.54160 * 15 14 13 17 17 C 1.54883 * 110.48370 * 70.22690 * 15 14 13 18 18 C 1.54890 * 102.74733 * 156.62202 * 17 15 14 19 19 C 1.54266 * 104.19444 * 322.05422 * 18 17 15 20 20 H 1.08998 * 110.07519 * 264.30582 * 19 18 17 21 21 N 1.46501 * 110.03435 * 142.89688 * 19 18 17 22 22 C 1.34777 * 120.00241 * 87.83061 * 21 19 18 23 23 O 1.21514 * 119.99595 * 0.02562 * 22 21 19 24 24 C 1.48152 * 120.00134 * 180.02562 * 22 21 19 25 25 C 1.39717 * 120.18425 * 179.72660 * 24 22 21 26 26 C 1.38819 * 117.89905 * 179.73367 * 25 24 22 27 27 C 1.38570 * 118.06968 * 0.53286 * 26 25 24 28 28 N 1.32172 * 120.06742 * 359.71989 * 27 26 25 29 29 N 1.28359 * 122.30191 * 0.02562 * 28 27 26 30 30 C 1.53876 * 106.60004 * 23.60916 * 19 18 17 31 31 H 0.97000 * 120.00377 * 0.27775 * 1 2 3 32 32 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.47128 * 300.00456 * 12 10 9 34 34 H 1.08999 * 109.47436 * 59.99595 * 12 10 9 35 35 H 1.00897 * 110.99542 * 56.04436 * 13 12 10 36 36 H 1.09007 * 109.47386 * 299.99895 * 14 13 12 37 37 H 1.09001 * 109.47554 * 60.00131 * 14 13 12 38 38 H 1.09004 * 110.75760 * 274.93030 * 17 15 14 39 39 H 1.08998 * 110.76127 * 38.30804 * 17 15 14 40 40 H 1.09000 * 110.48807 * 203.37879 * 18 17 15 41 41 H 1.09001 * 110.60392 * 80.79059 * 18 17 15 42 42 H 0.97001 * 119.99769 * 267.83904 * 21 19 18 43 43 H 1.07999 * 121.04590 * 359.97438 * 25 24 22 44 44 H 1.08001 * 120.96876 * 180.22836 * 26 25 24 45 45 H 1.07995 * 119.96874 * 179.69895 * 27 26 25 46 46 H 1.08995 * 110.03505 * 240.72055 * 30 19 18 47 47 H 1.08999 * 110.03260 * 119.28261 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 0.0067 5 1 1.8944 2.3934 -1.2160 6 1 1.8843 2.3994 1.2091 7 6 2.0089 -1.2034 0.0059 8 1 3.0889 -1.2033 0.0064 9 7 1.3234 -2.3906 0.0113 10 6 1.9973 -3.5578 0.0165 11 8 3.2102 -3.5578 0.0170 12 6 1.2438 -4.8629 0.0230 13 7 2.1985 -5.9795 0.0285 14 6 1.4981 -7.2708 0.0354 15 6 2.5231 -8.4068 0.0404 16 1 3.2395 -8.2764 -0.7706 17 6 3.2516 -8.4735 1.4056 18 6 3.7417 -9.9419 1.4600 19 6 2.5906 -10.7486 0.8244 20 1 1.9340 -11.1396 1.6017 21 7 3.1318 -11.8501 0.0243 22 6 3.3918 -13.0392 0.6031 23 8 3.1769 -13.1977 1.7885 24 6 3.9396 -14.1528 -0.2059 25 6 4.2159 -15.3853 0.3914 26 6 4.7227 -16.3975 -0.4122 27 6 4.9341 -16.1210 -1.7535 28 7 4.6497 -14.9237 -2.2357 29 7 4.1761 -13.9833 -1.5015 30 6 1.8157 -9.7726 -0.0782 31 1 -0.4851 0.8400 -0.0041 32 1 0.3533 -2.3906 0.0113 33 1 0.6174 -4.9165 0.9134 34 1 0.6168 -4.9249 -0.8664 35 1 2.8333 -5.9085 0.8095 36 1 0.8735 -7.3406 0.9261 37 1 0.8729 -7.3499 -0.8539 38 1 4.0953 -7.7837 1.4274 39 1 2.5607 -8.2664 2.2227 40 1 3.9008 -10.2529 2.4925 41 1 4.6572 -10.0624 0.8809 42 1 3.3031 -11.7235 -0.9220 43 1 4.0371 -15.5466 1.4442 44 1 4.9504 -17.3706 -0.0029 45 1 5.3320 -16.8845 -2.4055 46 1 0.7835 -9.6892 0.2616 47 1 1.8424 -10.1183 -1.1115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278600606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:26 Heat of formation + Delta-G solvation = -48.282039 kcal Electronic energy + Delta-G solvation = -28458.695666 eV Core-core repulsion = 24254.214876 eV Total energy + Delta-G solvation = -4204.480790 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.24714 -40.86162 -40.15826 -39.20376 -36.68108 -35.85631 -34.79753 -34.17974 -33.58224 -33.24128 -30.80516 -29.44649 -28.02729 -26.50128 -25.84641 -25.53177 -24.02145 -22.52358 -21.45402 -21.20707 -20.73806 -19.88832 -19.50259 -18.37730 -17.91906 -17.62354 -17.30620 -16.99621 -16.70801 -16.45734 -16.21248 -15.90444 -15.66177 -15.56810 -15.22396 -15.11564 -14.85222 -14.46967 -14.31000 -14.17546 -14.05721 -13.52338 -13.38037 -13.10616 -12.99816 -12.77347 -12.64314 -12.45408 -12.39591 -12.11638 -11.96267 -11.73467 -11.55610 -11.51661 -11.45138 -11.34375 -11.24468 -11.22261 -10.88282 -10.33939 -10.17894 -10.00959 -9.27843 -8.46487 -5.95168 -0.62548 -0.28631 1.36913 1.42181 1.52338 1.56490 1.87907 2.05868 2.29759 2.56431 2.77667 2.95361 3.20939 3.39362 3.51890 3.52311 3.62052 3.70613 3.76876 3.89400 3.91601 4.13004 4.30858 4.35814 4.39979 4.45749 4.51834 4.56978 4.59944 4.63414 4.66364 4.73687 4.80198 4.84248 4.91987 5.03794 5.08448 5.13211 5.15547 5.29256 5.41494 5.46997 5.51193 5.91904 6.14598 6.31316 6.45680 6.60826 6.93962 7.13194 7.45559 7.56881 8.12373 8.71167 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034030 B = 0.001369 C = 0.001356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.616077 B =20444.280602 C =20645.826288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.064 3.936 13 N -0.684 5.684 14 C 0.068 3.932 15 C -0.082 4.082 16 H 0.077 0.923 17 C -0.120 4.120 18 C -0.127 4.127 19 C 0.142 3.858 20 H 0.088 0.912 21 N -0.693 5.693 22 C 0.574 3.426 23 O -0.558 6.558 24 C 0.005 3.995 25 C -0.077 4.077 26 C -0.099 4.099 27 C 0.059 3.941 28 N -0.276 5.276 29 N -0.235 5.235 30 C -0.115 4.115 31 H 0.278 0.722 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.343 0.657 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.417 0.583 43 H 0.171 0.829 44 H 0.204 0.796 45 H 0.217 0.783 46 H 0.091 0.909 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.435 -36.051 0.120 36.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.068 4.068 13 N -0.317 5.317 14 C -0.061 4.061 15 C -0.101 4.101 16 H 0.095 0.905 17 C -0.158 4.158 18 C -0.166 4.166 19 C 0.038 3.962 20 H 0.107 0.893 21 N -0.344 5.344 22 C 0.357 3.643 23 O -0.436 6.436 24 C -0.141 4.141 25 C -0.106 4.106 26 C -0.128 4.128 27 C -0.103 4.103 28 N -0.119 5.119 29 N -0.081 5.081 30 C -0.153 4.153 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.162 0.838 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.255 0.745 43 H 0.189 0.811 44 H 0.221 0.779 45 H 0.234 0.766 46 H 0.109 0.891 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.959 -34.943 -1.029 35.182 hybrid contribution -0.269 0.240 1.686 1.724 sum 3.690 -34.703 0.658 34.905 Atomic orbital electron populations 1.69676 1.06817 1.29232 1.50393 1.26030 0.96536 1.02367 0.96248 0.84873 0.78020 0.77109 0.78341 1.19848 1.19583 1.19555 1.19713 0.92709 0.84100 1.49900 0.90387 1.41938 1.09333 1.04714 1.65074 1.20941 0.88280 0.86249 0.82119 1.90489 1.15923 1.87996 1.56648 1.21538 0.94073 0.88136 1.03048 1.60092 1.19135 1.01068 1.51393 1.22108 0.95506 0.87108 1.01352 1.21904 0.97034 0.93169 0.98041 0.90453 1.22539 1.00207 0.95731 0.97279 1.22692 0.98047 0.94901 1.00952 1.21745 0.94996 0.85800 0.93675 0.89346 1.46104 1.63287 1.10814 1.14195 1.17849 0.77729 0.82540 0.86153 1.90786 1.54029 1.83032 1.15753 1.22804 1.01410 0.96228 0.93688 1.22719 0.92986 0.91305 1.03608 1.22987 0.94299 1.01904 0.93609 1.25228 0.93056 0.95839 0.96180 1.73080 1.08900 1.00151 1.29723 1.73152 1.06900 1.24795 1.03288 1.22389 0.99846 0.92685 1.00394 0.91298 0.76951 0.91645 0.87792 0.83838 0.94011 0.90182 0.91829 0.90860 0.91611 0.91495 0.74529 0.81146 0.77918 0.76601 0.89078 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.93 13.05 21.66 0.28 -49.65 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -29.78 5.29 -306.98 -1.62 -31.41 16 10 C 0.44 21.08 7.82 87.66 0.69 21.77 16 11 O -0.62 -35.20 15.78 -3.08 -0.05 -35.25 16 12 C 0.06 2.22 6.17 85.56 0.53 2.74 16 13 N -0.68 -21.44 6.13 -517.90 -3.17 -24.61 16 14 C 0.07 1.48 5.02 86.31 0.43 1.91 16 15 C -0.08 -1.56 3.09 -9.72 -0.03 -1.59 16 16 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 17 C -0.12 -2.32 5.69 31.88 0.18 -2.14 16 18 C -0.13 -2.36 6.53 31.67 0.21 -2.16 16 19 C 0.14 2.40 3.25 45.72 0.15 2.55 16 20 H 0.09 1.65 7.56 -2.39 -0.02 1.63 16 21 N -0.69 -11.90 5.03 -441.68 -2.22 -14.12 16 22 C 0.57 11.47 7.81 86.88 0.68 12.15 16 23 O -0.56 -13.89 16.05 -3.76 -0.06 -13.95 16 24 C 0.01 0.09 6.83 41.99 0.29 0.38 16 25 C -0.08 -0.82 9.73 22.77 0.22 -0.60 16 26 C -0.10 -0.39 10.20 22.49 0.23 -0.16 16 27 C 0.06 0.40 11.31 84.72 0.96 1.36 16 28 N -0.28 -4.43 11.51 -57.15 -0.66 -5.09 16 29 N -0.23 -4.35 10.75 -48.49 -0.52 -4.87 16 30 C -0.11 -1.67 6.14 31.32 0.19 -1.48 16 31 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.40 19.49 7.90 -92.70 -0.73 18.76 16 33 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.34 11.39 7.72 -89.70 -0.69 10.70 16 36 H 0.04 0.82 8.02 -2.38 -0.02 0.80 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.41 8.05 -2.38 -0.02 1.39 16 39 H 0.07 1.36 7.97 -2.39 -0.02 1.34 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.30 8.05 -2.39 -0.02 1.28 16 42 H 0.42 6.39 7.68 -92.71 -0.71 5.67 16 43 H 0.17 1.46 7.72 -2.91 -0.02 1.44 16 44 H 0.20 -1.04 8.06 -2.91 -0.02 -1.07 16 45 H 0.22 -0.40 8.06 -2.91 -0.02 -0.43 16 46 H 0.09 1.15 7.84 -2.39 -0.02 1.13 16 47 H 0.09 1.10 7.62 -2.39 -0.02 1.08 16 Total: -1.00 -77.45 397.62 -1.10 -78.55 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: -1.10 Total: 38.95 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 6.00 Total: 16.10 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -7.91 Total: -129.74 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -0.11 Total: -49.20 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -77.45 -1.10 -78.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278600606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.269 kcal (2) G-P(sol) polarization free energy of solvation -77.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds