Wall clock time and date at job start Wed Apr 1 2020 05:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47138 * 270.00594 * 3 2 1 5 5 H 1.48502 * 109.46886 * 30.00458 * 3 2 1 6 6 H 1.48495 * 109.47039 * 150.00514 * 3 2 1 7 7 C 1.38951 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99557 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00193 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99807 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99855 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46800 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 H 1.09007 * 110.43503 * 56.08148 * 15 14 13 17 17 C 1.54894 * 110.48532 * 293.54689 * 15 14 13 18 18 C 1.54895 * 102.74497 * 203.37787 * 17 15 14 19 19 C 1.54263 * 104.19659 * 37.94210 * 18 17 15 20 20 H 1.09002 * 110.03079 * 95.72465 * 19 18 17 21 21 N 1.46504 * 110.03035 * 217.10067 * 19 18 17 22 22 C 1.34773 * 120.00227 * 273.54763 * 21 19 18 23 23 O 1.21514 * 120.00080 * 0.02562 * 22 21 19 24 24 C 1.48153 * 119.99671 * 180.02562 * 22 21 19 25 25 C 1.39721 * 120.18095 * 179.97438 * 24 22 21 26 26 C 1.38822 * 117.90063 * 180.02562 * 25 24 22 27 27 C 1.38574 * 118.06811 * 0.02562 * 26 25 24 28 28 N 1.32171 * 120.06441 * 0.02562 * 27 26 25 29 29 N 1.28357 * 122.30362 * 359.65695 * 28 27 26 30 30 C 1.53872 * 106.60027 * 336.38517 * 19 18 17 31 31 H 0.96998 * 120.00315 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00240 * 0.02562 * 9 7 2 33 33 H 1.08995 * 109.47455 * 60.00021 * 12 10 9 34 34 H 1.09003 * 109.47449 * 299.99253 * 12 10 9 35 35 H 1.00902 * 111.00190 * 56.03702 * 13 12 10 36 36 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 37 37 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 38 38 H 1.08992 * 110.75510 * 321.69048 * 17 15 14 39 39 H 1.08994 * 110.75546 * 85.06778 * 17 15 14 40 40 H 1.09002 * 110.48275 * 156.62346 * 18 17 15 41 41 H 1.08999 * 110.48840 * 279.12988 * 18 17 15 42 42 H 0.97004 * 119.99517 * 93.54416 * 21 19 18 43 43 H 1.08008 * 121.04868 * 0.02711 * 25 24 22 44 44 H 1.07998 * 120.96582 * 179.97438 * 26 25 24 45 45 H 1.07994 * 119.96546 * 179.97438 * 27 26 25 46 46 H 1.08994 * 110.03610 * 240.71798 * 30 19 18 47 47 H 1.09002 * 110.02918 * 119.28016 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6526 0.7002 6 1 3.5457 1.4402 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0004 14 6 1.4982 -7.2708 -0.0015 15 6 2.5231 -8.4068 -0.0014 16 1 3.2006 -8.3080 0.8468 17 6 3.3176 -8.4203 -1.3310 18 6 3.8109 -9.8859 -1.4194 19 6 2.6309 -10.7159 -0.8732 20 1 2.0142 -11.0752 -1.6970 21 7 3.1334 -11.8487 -0.0918 22 6 3.4487 -13.0053 -0.7078 23 8 3.3166 -13.1083 -1.9113 24 6 3.9563 -14.1510 0.0826 25 6 4.2839 -15.3519 -0.5520 26 6 4.7546 -16.3947 0.2342 27 6 4.8705 -16.1817 1.5986 28 7 4.5367 -15.0126 2.1170 29 7 4.1062 -14.0409 1.3973 30 6 1.8121 -9.7755 0.0285 31 1 -0.4850 0.8400 0.0004 32 1 0.3535 -2.3907 -0.0005 33 1 0.6175 -4.9205 -0.8913 34 1 0.6169 -4.9209 0.8887 35 1 2.8328 -5.9124 0.7814 36 1 0.8723 -7.3455 0.8878 37 1 0.8743 -7.3450 -0.8922 38 1 2.6672 -8.1803 -2.1720 39 1 4.1607 -7.7311 -1.2842 40 1 4.0206 -10.1560 -2.4544 41 1 4.6979 -10.0278 -0.8019 42 1 3.2392 -11.7663 0.8689 43 1 4.1742 -15.4653 -1.6205 44 1 5.0221 -17.3446 -0.2046 45 1 5.2330 -16.9721 2.2390 46 1 1.7886 -10.1619 1.0474 47 1 0.7976 -9.6776 -0.3578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278600608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:30 Heat of formation + Delta-G solvation = -20.491394 kcal Electronic energy + Delta-G solvation = -28461.396731 eV Core-core repulsion = 24258.121035 eV Total energy + Delta-G solvation = -4203.275697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73585 -40.12033 -38.57603 -38.02302 -35.49487 -34.17346 -33.79836 -33.63015 -32.95696 -31.20053 -29.77192 -28.57298 -26.67864 -25.66901 -25.13655 -24.29254 -22.75713 -21.85699 -20.63048 -20.22097 -19.14077 -18.88019 -17.88977 -17.84442 -17.26481 -16.58456 -16.16134 -16.02382 -15.62251 -15.27269 -14.90405 -14.82280 -14.58558 -14.38226 -14.27090 -14.03577 -13.79101 -13.65367 -13.40434 -13.26568 -12.53428 -12.16016 -12.13390 -11.88097 -11.61178 -11.53810 -11.48437 -11.07031 -11.03206 -10.95166 -10.93725 -10.73754 -10.69813 -10.59222 -10.52174 -10.39570 -10.37749 -10.19561 -9.48647 -9.41454 -8.42057 -8.00216 -7.92789 -6.39594 -3.80297 -0.15257 0.11656 2.15342 2.53021 3.08734 3.19634 3.28023 3.30630 3.33979 3.79116 3.93928 3.97565 4.06444 4.08865 4.27094 4.30952 4.37676 4.49335 4.59332 4.72172 5.04525 5.11435 5.20528 5.23186 5.26387 5.27722 5.30267 5.39126 5.43476 5.47814 5.52788 5.58664 5.74089 5.82949 5.86348 5.93806 6.00084 6.03335 6.24378 6.28894 6.32634 6.38723 7.02054 7.27115 7.57269 7.65183 7.71643 7.93624 8.08871 8.63937 9.20284 9.57041 10.08703 10.78222 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034961 B = 0.001368 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.708472 B =20467.818919 C =20618.446149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.667 5.667 14 C 0.066 3.934 15 C -0.088 4.088 16 H 0.077 0.923 17 C -0.104 4.104 18 C -0.137 4.137 19 C 0.139 3.861 20 H 0.094 0.906 21 N -0.699 5.699 22 C 0.575 3.425 23 O -0.527 6.527 24 C 0.025 3.975 25 C -0.066 4.066 26 C -0.121 4.121 27 C 0.055 3.945 28 N -0.240 5.240 29 N -0.211 5.211 30 C -0.125 4.125 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.348 0.652 36 H 0.026 0.974 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.411 0.589 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.180 0.820 46 H 0.072 0.928 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.888 -34.047 1.096 34.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.299 5.299 14 C -0.064 4.064 15 C -0.107 4.107 16 H 0.095 0.905 17 C -0.142 4.142 18 C -0.176 4.176 19 C 0.035 3.965 20 H 0.112 0.888 21 N -0.350 5.350 22 C 0.357 3.643 23 O -0.402 6.402 24 C -0.122 4.122 25 C -0.095 4.095 26 C -0.150 4.150 27 C -0.107 4.107 28 N -0.083 5.083 29 N -0.058 5.058 30 C -0.164 4.164 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.167 0.833 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.248 0.752 43 H 0.181 0.819 44 H 0.177 0.823 45 H 0.197 0.803 46 H 0.091 0.909 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.398 -32.949 0.890 33.254 hybrid contribution -0.392 -0.191 0.142 0.459 sum 4.006 -33.141 1.032 33.398 Atomic orbital electron populations 1.69613 1.05932 1.28114 1.50729 1.25254 0.95623 0.99691 0.97363 0.85860 0.79215 0.80830 0.78397 1.20399 1.20960 1.19440 1.19708 0.93379 0.82276 1.47519 0.87938 1.41867 1.09188 1.04615 1.64471 1.19836 0.88395 0.84749 0.84356 1.90519 1.13777 1.87086 1.55330 1.21663 0.94383 0.91039 1.01099 1.60043 1.18811 0.99867 1.51207 1.22021 0.95160 0.88892 1.00284 1.21959 0.96929 0.92623 0.99197 0.90504 1.22396 1.00304 0.94642 0.96837 1.22840 0.97505 0.95699 1.01520 1.21819 0.95553 0.84943 0.94146 0.88791 1.46127 1.64606 1.12005 1.12299 1.17575 0.78106 0.82009 0.86585 1.90819 1.53361 1.82670 1.13342 1.22908 1.00038 0.95909 0.93304 1.22487 0.92413 0.91461 1.03152 1.22505 0.97173 1.00660 0.94665 1.24568 0.94388 0.97046 0.94701 1.73169 1.07330 0.97903 1.29887 1.73225 1.06688 1.22237 1.03664 1.22460 0.99518 0.94677 0.99725 0.91909 0.77479 0.89679 0.94020 0.83269 0.95635 0.90997 0.91009 0.90320 0.91106 0.91271 0.75194 0.81870 0.82284 0.80339 0.90921 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.42 9.68 -14.94 -0.14 -8.57 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.43 5.29 -10.97 -0.06 -14.49 16 10 C 0.44 10.48 7.82 -10.99 -0.09 10.40 16 11 O -0.58 -15.93 15.78 5.55 0.09 -15.84 16 12 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 13 N -0.67 -10.52 5.93 -115.06 -0.68 -11.21 16 14 C 0.07 0.77 4.97 -3.83 -0.02 0.75 16 15 C -0.09 -0.87 3.05 -88.96 -0.27 -1.14 16 16 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.10 -1.11 6.14 -24.73 -0.15 -1.27 16 18 C -0.14 -1.33 6.52 -25.07 -0.16 -1.49 16 19 C 0.14 1.23 3.23 -66.81 -0.22 1.02 16 20 H 0.09 0.92 7.61 -51.93 -0.39 0.52 16 21 N -0.70 -6.03 5.04 -53.57 -0.27 -6.30 16 22 C 0.57 5.70 7.81 -12.19 -0.10 5.60 16 23 O -0.53 -6.51 16.07 5.35 0.09 -6.42 16 24 C 0.02 0.21 6.83 -82.83 -0.57 -0.36 16 25 C -0.07 -0.39 9.73 -38.81 -0.38 -0.77 16 26 C -0.12 -0.42 10.20 -39.24 -0.40 -0.82 16 27 C 0.06 0.25 11.31 -17.28 -0.20 0.06 16 28 N -0.24 -2.01 11.51 30.58 0.35 -1.66 16 29 N -0.21 -1.94 10.75 33.32 0.36 -1.59 16 30 C -0.13 -1.00 6.14 -25.61 -0.16 -1.15 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.35 5.71 8.43 -39.29 -0.33 5.38 16 36 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 38 H 0.07 0.80 8.02 -51.93 -0.42 0.38 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 42 H 0.41 3.11 7.65 -40.82 -0.31 2.80 16 43 H 0.16 0.79 7.72 -52.48 -0.41 0.39 16 44 H 0.16 -0.02 8.06 -52.49 -0.42 -0.44 16 45 H 0.18 0.17 8.06 -52.49 -0.42 -0.26 16 46 H 0.07 0.51 7.60 -51.93 -0.39 0.12 16 47 H 0.08 0.60 7.84 -51.93 -0.41 0.19 16 LS Contribution 398.73 15.07 6.01 6.01 Total: -1.00 -34.50 398.73 -8.10 -42.60 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -6.72 Total: 13.06 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -2.97 Total: 3.62 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.42 Total: -59.20 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: 0.17 Total: -22.26 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.50 -8.10 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278600608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.108 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds