Wall clock time and date at job start Wed Apr 1 2020 05:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47138 * 270.00594 * 3 2 1 5 5 H 1.48502 * 109.46886 * 30.00458 * 3 2 1 6 6 H 1.48495 * 109.47039 * 150.00514 * 3 2 1 7 7 C 1.38951 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99557 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00193 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99807 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99855 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46800 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 H 1.09007 * 110.43503 * 56.08148 * 15 14 13 17 17 C 1.54894 * 110.48532 * 293.54689 * 15 14 13 18 18 C 1.54895 * 102.74497 * 203.37787 * 17 15 14 19 19 C 1.54263 * 104.19659 * 37.94210 * 18 17 15 20 20 H 1.09002 * 110.03079 * 95.72465 * 19 18 17 21 21 N 1.46504 * 110.03035 * 217.10067 * 19 18 17 22 22 C 1.34773 * 120.00227 * 273.54763 * 21 19 18 23 23 O 1.21514 * 120.00080 * 0.02562 * 22 21 19 24 24 C 1.48153 * 119.99671 * 180.02562 * 22 21 19 25 25 C 1.39721 * 120.18095 * 179.97438 * 24 22 21 26 26 C 1.38822 * 117.90063 * 180.02562 * 25 24 22 27 27 C 1.38574 * 118.06811 * 0.02562 * 26 25 24 28 28 N 1.32171 * 120.06441 * 0.02562 * 27 26 25 29 29 N 1.28357 * 122.30362 * 359.65695 * 28 27 26 30 30 C 1.53872 * 106.60027 * 336.38517 * 19 18 17 31 31 H 0.96998 * 120.00315 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00240 * 0.02562 * 9 7 2 33 33 H 1.08995 * 109.47455 * 60.00021 * 12 10 9 34 34 H 1.09003 * 109.47449 * 299.99253 * 12 10 9 35 35 H 1.00902 * 111.00190 * 56.03702 * 13 12 10 36 36 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 37 37 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 38 38 H 1.08992 * 110.75510 * 321.69048 * 17 15 14 39 39 H 1.08994 * 110.75546 * 85.06778 * 17 15 14 40 40 H 1.09002 * 110.48275 * 156.62346 * 18 17 15 41 41 H 1.08999 * 110.48840 * 279.12988 * 18 17 15 42 42 H 0.97004 * 119.99517 * 93.54416 * 21 19 18 43 43 H 1.08008 * 121.04868 * 0.02711 * 25 24 22 44 44 H 1.07998 * 120.96582 * 179.97438 * 26 25 24 45 45 H 1.07994 * 119.96546 * 179.97438 * 27 26 25 46 46 H 1.08994 * 110.03610 * 240.71798 * 30 19 18 47 47 H 1.09002 * 110.02918 * 119.28016 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6526 0.7002 6 1 3.5457 1.4402 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0004 14 6 1.4982 -7.2708 -0.0015 15 6 2.5231 -8.4068 -0.0014 16 1 3.2006 -8.3080 0.8468 17 6 3.3176 -8.4203 -1.3310 18 6 3.8109 -9.8859 -1.4194 19 6 2.6309 -10.7159 -0.8732 20 1 2.0142 -11.0752 -1.6970 21 7 3.1334 -11.8487 -0.0918 22 6 3.4487 -13.0053 -0.7078 23 8 3.3166 -13.1083 -1.9113 24 6 3.9563 -14.1510 0.0826 25 6 4.2839 -15.3519 -0.5520 26 6 4.7546 -16.3947 0.2342 27 6 4.8705 -16.1817 1.5986 28 7 4.5367 -15.0126 2.1170 29 7 4.1062 -14.0409 1.3973 30 6 1.8121 -9.7755 0.0285 31 1 -0.4850 0.8400 0.0004 32 1 0.3535 -2.3907 -0.0005 33 1 0.6175 -4.9205 -0.8913 34 1 0.6169 -4.9209 0.8887 35 1 2.8328 -5.9124 0.7814 36 1 0.8723 -7.3455 0.8878 37 1 0.8743 -7.3450 -0.8922 38 1 2.6672 -8.1803 -2.1720 39 1 4.1607 -7.7311 -1.2842 40 1 4.0206 -10.1560 -2.4544 41 1 4.6979 -10.0278 -0.8019 42 1 3.2392 -11.7663 0.8689 43 1 4.1742 -15.4653 -1.6205 44 1 5.0221 -17.3446 -0.2046 45 1 5.2330 -16.9721 2.2390 46 1 1.7886 -10.1619 1.0474 47 1 0.7976 -9.6776 -0.3578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278600608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:29 Heat of formation + Delta-G solvation = -47.499284 kcal Electronic energy + Delta-G solvation = -28462.567881 eV Core-core repulsion = 24258.121035 eV Total energy + Delta-G solvation = -4204.446847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.24548 -40.84590 -40.14624 -39.16715 -36.67370 -35.84826 -34.80632 -34.17890 -33.58126 -33.23779 -30.79066 -29.39419 -28.03540 -26.49772 -25.84713 -25.53226 -23.90523 -22.51894 -21.43097 -21.30154 -20.74607 -19.87505 -19.49592 -18.37232 -17.84038 -17.61794 -17.27658 -17.00732 -16.64424 -16.44786 -16.12949 -15.92345 -15.65757 -15.57048 -15.22870 -15.05525 -14.83533 -14.77005 -14.32297 -14.16416 -14.05645 -13.50540 -13.15469 -13.03948 -12.87698 -12.81967 -12.63805 -12.42126 -12.36635 -12.12129 -11.91223 -11.72642 -11.68530 -11.50235 -11.43517 -11.34299 -11.23701 -11.22002 -10.88478 -10.32525 -10.17141 -10.00593 -9.23802 -8.46051 -5.94771 -0.62442 -0.28683 1.38518 1.42129 1.52856 1.54893 1.88293 2.06764 2.29929 2.56554 2.77893 2.95459 3.21437 3.39566 3.50417 3.54614 3.64080 3.76874 3.80331 3.85487 3.91594 4.13204 4.30470 4.37438 4.42232 4.49758 4.53222 4.59117 4.60906 4.65688 4.72073 4.74106 4.81613 4.84762 4.93235 5.02446 5.12136 5.13253 5.17665 5.40012 5.41557 5.49770 5.52790 5.92130 6.15030 6.32080 6.46837 6.61336 6.95005 7.13528 7.45446 7.57496 8.13054 8.71378 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034961 B = 0.001368 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.708472 B =20467.818919 C =20618.446149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.066 3.934 13 N -0.682 5.682 14 C 0.068 3.932 15 C -0.082 4.082 16 H 0.076 0.924 17 C -0.102 4.102 18 C -0.130 4.130 19 C 0.143 3.857 20 H 0.087 0.913 21 N -0.693 5.693 22 C 0.573 3.427 23 O -0.558 6.558 24 C 0.006 3.994 25 C -0.078 4.078 26 C -0.099 4.099 27 C 0.059 3.941 28 N -0.276 5.276 29 N -0.234 5.234 30 C -0.114 4.114 31 H 0.278 0.722 32 H 0.396 0.604 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.343 0.657 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.417 0.583 43 H 0.171 0.829 44 H 0.204 0.796 45 H 0.218 0.782 46 H 0.087 0.913 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 -36.056 1.652 36.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.067 4.067 13 N -0.314 5.314 14 C -0.060 4.060 15 C -0.101 4.101 16 H 0.094 0.906 17 C -0.140 4.140 18 C -0.169 4.169 19 C 0.039 3.961 20 H 0.105 0.895 21 N -0.344 5.344 22 C 0.357 3.643 23 O -0.436 6.436 24 C -0.141 4.141 25 C -0.107 4.107 26 C -0.128 4.128 27 C -0.103 4.103 28 N -0.118 5.118 29 N -0.081 5.081 30 C -0.152 4.152 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.161 0.839 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.255 0.745 43 H 0.188 0.812 44 H 0.221 0.779 45 H 0.234 0.766 46 H 0.106 0.894 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.887 -34.968 1.470 35.214 hybrid contribution -0.188 0.296 -0.029 0.352 sum 3.699 -34.672 1.442 34.898 Atomic orbital electron populations 1.69671 1.06813 1.29280 1.50361 1.26025 0.96532 1.02358 0.96252 0.84935 0.77892 0.76917 0.78634 1.19695 1.19463 1.19799 1.19674 0.92709 0.84125 1.49981 0.90392 1.41937 1.09323 1.04722 1.65133 1.20944 0.88279 0.86243 0.82072 1.90487 1.15917 1.87992 1.56610 1.21521 0.94047 0.88139 1.02967 1.60049 1.19080 1.00984 1.51279 1.22105 0.95480 0.87110 1.01325 1.21896 0.96604 0.93177 0.98440 0.90591 1.22322 0.99641 0.94664 0.97403 1.22746 0.97835 0.95272 1.01059 1.21730 0.95054 0.85046 0.94285 0.89496 1.46100 1.64053 1.11683 1.12524 1.17858 0.77542 0.82578 0.86362 1.90790 1.54897 1.83320 1.14601 1.22798 1.01511 0.96356 0.93419 1.22723 0.92702 0.91372 1.03860 1.22987 0.94569 1.01346 0.93896 1.25226 0.92677 0.96482 0.95908 1.73074 1.08782 0.99289 1.30681 1.73141 1.07773 1.23295 1.03888 1.22381 0.99497 0.92932 1.00436 0.91305 0.76973 0.87939 0.91655 0.83906 0.93972 0.90311 0.91434 0.92442 0.91958 0.91579 0.74517 0.81192 0.77938 0.76589 0.89419 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.96 13.05 21.66 0.28 -49.68 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 3 Si 0.99 43.31 29.55 68.60 2.03 45.34 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.34 -19.29 9.68 84.04 0.81 -18.47 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.76 5.29 -306.99 -1.62 -31.39 16 10 C 0.44 21.00 7.82 87.65 0.69 21.69 16 11 O -0.62 -35.00 15.78 -3.06 -0.05 -35.05 16 12 C 0.07 2.24 6.17 85.55 0.53 2.77 16 13 N -0.68 -20.98 5.93 -517.93 -3.07 -24.05 16 14 C 0.07 1.47 4.97 86.30 0.43 1.90 16 15 C -0.08 -1.54 3.05 -9.72 -0.03 -1.57 16 16 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 17 C -0.10 -2.22 6.14 31.89 0.20 -2.02 16 18 C -0.13 -2.58 6.52 31.67 0.21 -2.38 16 19 C 0.14 2.48 3.23 45.71 0.15 2.62 16 20 H 0.09 1.68 7.61 -2.39 -0.02 1.66 16 21 N -0.69 -11.90 5.04 -441.68 -2.23 -14.13 16 22 C 0.57 11.56 7.81 86.88 0.68 12.24 16 23 O -0.56 -14.15 16.07 -3.76 -0.06 -14.21 16 24 C 0.01 0.10 6.83 41.99 0.29 0.39 16 25 C -0.08 -0.83 9.73 22.77 0.22 -0.61 16 26 C -0.10 -0.39 10.20 22.49 0.23 -0.16 16 27 C 0.06 0.39 11.31 84.72 0.96 1.35 16 28 N -0.28 -4.36 11.51 -57.15 -0.66 -5.01 16 29 N -0.23 -4.28 10.75 -48.49 -0.52 -4.81 16 30 C -0.11 -1.63 6.14 31.32 0.19 -1.44 16 31 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.40 19.47 7.90 -92.71 -0.73 18.73 16 33 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.34 11.18 8.43 -89.69 -0.76 10.42 16 36 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 1.61 8.10 -2.39 -0.02 1.60 16 38 H 0.07 1.51 8.02 -2.39 -0.02 1.49 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.34 8.05 -2.39 -0.02 1.32 16 42 H 0.42 6.22 7.65 -92.71 -0.71 5.51 16 43 H 0.17 1.50 7.72 -2.91 -0.02 1.48 16 44 H 0.20 -1.03 8.06 -2.91 -0.02 -1.06 16 45 H 0.22 -0.44 8.06 -2.91 -0.02 -0.46 16 46 H 0.09 1.04 7.60 -2.39 -0.02 1.02 16 47 H 0.09 1.15 7.84 -2.39 -0.02 1.13 16 Total: -1.00 -77.29 398.73 -1.06 -78.34 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: -1.17 Total: 38.52 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 6.01 Total: 16.13 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -7.82 Total: -129.07 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -0.11 Total: -49.26 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -77.29 -1.06 -78.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278600608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.842 kcal (2) G-P(sol) polarization free energy of solvation -77.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds