Wall clock time and date at job start Wed Apr 1 2020 04:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00437 * 2 1 4 4 H 1.48494 * 109.47477 * 239.99432 * 3 2 1 5 5 H 1.48494 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46951 * 119.99753 * 3 2 1 7 7 C 1.38959 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00399 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99579 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99643 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99767 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99916 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47053 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00062 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47359 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.70347 * 51.11257 * 15 14 13 17 17 C 1.53628 * 109.66545 * 171.70919 * 15 14 13 18 18 C 1.53044 * 109.24090 * 174.54897 * 17 15 14 19 19 C 1.53042 * 109.53720 * 298.51060 * 18 17 15 20 20 C 1.53193 * 109.31549 * 61.36347 * 19 18 17 21 21 N 1.46920 * 108.77625 * 305.36897 * 20 19 18 22 22 C 1.34780 * 120.63103 * 233.58412 * 21 20 19 23 23 O 1.21286 * 120.00368 * 174.03853 * 22 21 20 24 24 C 1.50696 * 119.99742 * 354.03622 * 22 21 20 25 25 C 1.52999 * 109.47295 * 180.02562 * 24 22 21 26 26 C 1.52995 * 109.47326 * 180.02562 * 25 24 22 27 27 F 1.39903 * 109.47519 * 174.99860 * 26 25 24 28 28 F 1.39902 * 109.47288 * 294.99903 * 26 25 24 29 29 H 0.97004 * 119.99465 * 0.02562 * 1 2 3 30 30 H 0.96991 * 120.00227 * 0.02562 * 9 7 2 31 31 H 1.09009 * 109.46822 * 60.00743 * 12 10 9 32 32 H 1.08998 * 109.47610 * 300.00830 * 12 10 9 33 33 H 1.00896 * 111.00221 * 56.05379 * 13 12 10 34 34 H 1.09000 * 109.47006 * 59.99928 * 14 13 12 35 35 H 1.09006 * 109.47149 * 300.00606 * 14 13 12 36 36 H 1.08997 * 109.63213 * 54.55753 * 17 15 14 37 37 H 1.08999 * 109.42738 * 294.41511 * 17 15 14 38 38 H 1.08996 * 109.45620 * 178.49407 * 18 17 15 39 39 H 1.09003 * 109.45783 * 58.52889 * 18 17 15 40 40 H 1.09001 * 109.49572 * 301.41616 * 19 18 17 41 41 H 1.09001 * 109.49729 * 181.32180 * 19 18 17 42 42 H 1.08998 * 109.58965 * 185.57942 * 20 19 18 43 43 H 1.09004 * 109.69648 * 65.22117 * 20 19 18 44 44 H 1.09006 * 109.47122 * 300.00323 * 24 22 21 45 45 H 1.09004 * 109.47577 * 59.99909 * 24 22 21 46 46 H 1.08996 * 109.47110 * 300.00258 * 25 24 22 47 47 H 1.09002 * 109.46986 * 60.00386 * 25 24 22 48 48 H 1.08997 * 109.47556 * 54.99951 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2833 2.7464 0.0006 6 1 3.1019 1.6962 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5580 0.0016 11 8 3.2101 -3.5579 0.0011 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9796 0.0027 14 6 1.4977 -7.2709 0.0026 15 6 2.5226 -8.4069 0.0038 16 1 3.2465 -8.2480 0.8030 17 6 1.8058 -9.7496 0.2124 18 6 2.8189 -10.8886 0.0764 19 6 3.4171 -10.8761 -1.3322 20 6 4.1478 -9.5492 -1.5606 21 7 3.2178 -8.4445 -1.2901 22 6 3.0104 -7.4807 -2.2092 23 8 2.1621 -6.6348 -2.0201 24 6 3.8327 -7.4542 -3.4717 25 6 3.4008 -6.2685 -4.3369 26 6 4.2353 -6.2419 -5.6190 27 9 3.7648 -5.2283 -6.4607 28 9 5.5750 -5.9976 -5.2985 29 1 -0.4849 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0016 31 1 0.6166 -4.9209 -0.8877 32 1 0.6171 -4.9205 0.8923 33 1 2.8329 -5.9123 0.7840 34 1 0.8732 -7.3454 -0.8875 35 1 0.8724 -7.3451 0.8924 36 1 1.0232 -9.8673 -0.5372 37 1 1.3631 -9.7734 1.2082 38 1 2.3192 -11.8416 0.2502 39 1 3.6143 -10.7566 0.8099 40 1 2.6193 -10.9832 -2.0672 41 1 4.1211 -11.7018 -1.4359 42 1 4.4904 -9.4937 -2.5938 43 1 5.0028 -9.4801 -0.8879 44 1 4.8875 -7.3520 -3.2163 45 1 3.6809 -8.3817 -4.0239 46 1 2.3461 -6.3702 -4.5923 47 1 3.5532 -5.3412 -3.7846 48 1 4.1525 -7.2030 -6.1264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280446792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:46 Heat of formation + Delta-G solvation = -150.973540 kcal Electronic energy + Delta-G solvation = -32021.694401 eV Core-core repulsion = 27362.071388 eV Total energy + Delta-G solvation = -4659.623014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.94144 -46.95801 -40.51581 -38.03465 -37.42401 -35.42456 -33.84050 -33.47887 -32.85727 -31.61088 -31.02932 -27.78719 -27.01642 -25.42315 -24.42835 -23.22113 -22.73500 -21.48978 -20.83649 -19.33196 -18.80929 -17.73135 -17.62308 -17.33151 -16.91913 -16.20838 -15.89707 -15.76274 -15.46635 -15.09410 -14.71892 -14.46956 -14.31044 -14.12224 -14.00354 -13.85425 -13.66470 -13.42300 -13.30460 -13.23081 -12.84810 -12.75032 -12.54766 -12.39301 -12.17028 -11.94584 -11.75456 -11.43680 -11.35444 -11.27895 -11.23768 -11.13013 -10.97659 -10.90050 -10.82759 -10.70755 -10.36094 -10.10165 -9.37544 -8.80224 -8.52213 -8.20648 -7.83492 -7.51699 -6.29926 -3.70030 2.90569 3.02331 3.28049 3.32209 3.37389 3.79362 4.09296 4.12716 4.21632 4.38214 4.39595 4.46625 4.53528 4.57249 4.68136 4.86793 4.99705 5.02393 5.05596 5.07724 5.22166 5.24815 5.33401 5.37722 5.41103 5.45125 5.51698 5.61887 5.65597 5.69121 5.75598 5.75960 5.82993 5.98711 6.06030 6.09800 6.22679 6.31788 6.48250 6.65681 7.53400 7.57203 7.65861 7.98275 8.20153 8.57197 8.76069 9.30821 9.69500 10.22359 10.88252 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.003298 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.304422 B = 8488.391873 C =11018.250036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.020 3.980 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.296 4.296 8 H 0.101 0.899 9 N -0.569 5.569 10 C 0.448 3.552 11 O -0.584 6.584 12 C 0.064 3.936 13 N -0.636 5.636 14 C 0.070 3.930 15 C 0.154 3.846 16 H 0.068 0.932 17 C -0.129 4.129 18 C -0.118 4.118 19 C -0.135 4.135 20 C 0.109 3.891 21 N -0.614 5.614 22 C 0.506 3.494 23 O -0.463 6.463 24 C -0.137 4.137 25 C -0.157 4.157 26 C 0.263 3.737 27 F -0.206 7.206 28 F -0.207 7.207 29 H 0.270 0.730 30 H 0.391 0.609 31 H 0.086 0.914 32 H 0.031 0.969 33 H 0.328 0.672 34 H 0.094 0.906 35 H 0.014 0.986 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.103 0.897 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.047 -25.755 -5.569 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.426 4.426 8 H 0.118 0.882 9 N -0.206 5.206 10 C 0.233 3.767 11 O -0.468 6.468 12 C -0.069 4.069 13 N -0.268 5.268 14 C -0.059 4.059 15 C 0.050 3.950 16 H 0.086 0.914 17 C -0.168 4.168 18 C -0.156 4.156 19 C -0.173 4.173 20 C -0.014 4.014 21 N -0.351 5.351 22 C 0.292 3.708 23 O -0.333 6.333 24 C -0.177 4.177 25 C -0.195 4.195 26 C 0.209 3.791 27 F -0.187 7.187 28 F -0.189 7.189 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.147 0.853 34 H 0.112 0.888 35 H 0.032 0.968 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.118 0.882 47 H 0.122 0.878 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.353 -25.028 -6.184 26.145 hybrid contribution -0.332 0.814 0.921 1.273 sum 4.021 -24.214 -5.263 25.103 Atomic orbital electron populations 1.69612 1.05886 1.28012 1.51160 1.25228 0.95608 0.99572 0.97641 0.85946 0.78751 0.80674 0.78997 1.19938 1.21049 1.20033 1.19637 0.93256 0.82394 1.47289 0.88162 1.41859 1.09112 1.04602 1.64993 1.19919 0.88371 0.84798 0.83581 1.90496 1.13912 1.87202 1.55175 1.21497 0.94239 0.90706 1.00428 1.60310 1.18506 0.99452 1.48510 1.22145 0.95146 0.88450 1.00173 1.21278 0.93983 0.94497 0.85194 0.91417 1.22011 0.98334 0.94127 1.02337 1.21492 0.98794 0.98409 0.96900 1.21923 1.00464 0.97183 0.97742 1.21649 0.92011 0.85969 1.01771 1.47828 1.45488 1.25467 1.16305 1.20137 0.85213 0.81047 0.84409 1.90863 1.31874 1.35826 1.74718 1.21576 1.01785 0.98858 0.95481 1.22414 1.01034 1.01928 0.94149 1.21940 0.76874 0.89420 0.90853 1.92999 1.88379 1.64279 1.73055 1.92989 1.36553 1.95675 1.93637 0.91991 0.77578 0.89545 0.95118 0.85332 0.88822 0.96796 0.91371 0.90967 0.91799 0.91770 0.91552 0.90965 0.89962 0.91686 0.88623 0.89439 0.88220 0.87802 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 13.05 55.50 0.72 -25.05 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 22.06 29.55 -169.99 -5.02 17.03 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.30 -8.71 9.68 -14.93 -0.14 -8.85 16 8 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 9 N -0.57 -15.39 5.29 -10.96 -0.06 -15.45 16 10 C 0.45 11.40 7.82 -10.98 -0.09 11.31 16 11 O -0.58 -16.81 15.78 5.54 0.09 -16.73 16 12 C 0.06 1.27 5.78 -4.98 -0.03 1.24 16 13 N -0.64 -11.26 3.54 -115.06 -0.41 -11.67 16 14 C 0.07 0.96 4.30 -3.83 -0.02 0.94 16 15 C 0.15 1.66 3.09 -67.37 -0.21 1.45 16 16 H 0.07 0.76 8.12 -51.93 -0.42 0.33 16 17 C -0.13 -1.04 5.39 -26.38 -0.14 -1.18 16 18 C -0.12 -0.75 5.88 -26.69 -0.16 -0.90 16 19 C -0.13 -0.77 6.08 -26.61 -0.16 -0.93 16 20 C 0.11 0.77 6.32 -3.71 -0.02 0.75 16 21 N -0.61 -6.42 2.97 -164.97 -0.49 -6.91 16 22 C 0.51 6.50 7.38 -10.99 -0.08 6.42 16 23 O -0.46 -7.73 9.48 5.55 0.05 -7.68 16 24 C -0.14 -1.33 4.04 -27.89 -0.11 -1.45 16 25 C -0.16 -1.83 4.73 -26.73 -0.13 -1.96 16 26 C 0.26 2.73 5.29 37.16 0.20 2.93 16 27 F -0.21 -2.74 17.34 2.25 0.04 -2.70 16 28 F -0.21 -2.60 17.02 2.25 0.04 -2.57 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.39 10.20 7.90 -40.82 -0.32 9.88 16 31 H 0.09 1.71 7.88 -51.92 -0.41 1.30 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.33 6.05 8.42 -39.29 -0.33 5.72 16 34 H 0.09 1.40 6.31 -51.93 -0.33 1.07 16 35 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.45 5.97 -51.93 -0.31 0.14 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.92 7.92 -51.93 -0.41 0.51 16 45 H 0.09 0.55 7.44 -51.93 -0.39 0.16 16 46 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 47 H 0.10 1.64 8.10 -51.93 -0.42 1.22 16 48 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -35.15 389.64 -7.85 -43.00 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -7.50 Total: 12.60 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -1.19 Total: 10.25 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.23 Total: -59.08 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.14 Total: -24.41 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.08 Total: -5.26 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.15 -7.85 -43.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280446792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.978 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds