Wall clock time and date at job start Wed Apr 1 2020 04:57:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31408 * 1
3 3 Si 1.86797 * 120.00437 * 2 1
4 4 H 1.48494 * 109.47477 * 239.99432 * 3 2 1
5 5 H 1.48494 * 109.46989 * 0.02562 * 3 2 1
6 6 H 1.48506 * 109.46951 * 119.99753 * 3 2 1
7 7 C 1.38959 * 119.99881 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00399 * 180.02562 * 7 2 1
9 9 N 1.37100 * 119.99579 * 359.97438 * 7 2 1
10 10 C 1.34781 * 119.99643 * 179.97438 * 9 7 2
11 11 O 1.21297 * 119.99767 * 0.02562 * 10 9 7
12 12 C 1.50699 * 119.99916 * 180.02562 * 10 9 7
13 13 N 1.46895 * 109.47053 * 180.02562 * 12 10 9
14 14 C 1.46900 * 111.00062 * 180.02562 * 13 12 10
15 15 C 1.52997 * 109.47359 * 180.02562 * 14 13 12
16 16 H 1.08995 * 109.70347 * 51.11257 * 15 14 13
17 17 C 1.53628 * 109.66545 * 171.70919 * 15 14 13
18 18 C 1.53044 * 109.24090 * 174.54897 * 17 15 14
19 19 C 1.53042 * 109.53720 * 298.51060 * 18 17 15
20 20 C 1.53193 * 109.31549 * 61.36347 * 19 18 17
21 21 N 1.46920 * 108.77625 * 305.36897 * 20 19 18
22 22 C 1.34780 * 120.63103 * 233.58412 * 21 20 19
23 23 O 1.21286 * 120.00368 * 174.03853 * 22 21 20
24 24 C 1.50696 * 119.99742 * 354.03622 * 22 21 20
25 25 C 1.52999 * 109.47295 * 180.02562 * 24 22 21
26 26 C 1.52995 * 109.47326 * 180.02562 * 25 24 22
27 27 F 1.39903 * 109.47519 * 174.99860 * 26 25 24
28 28 F 1.39902 * 109.47288 * 294.99903 * 26 25 24
29 29 H 0.97004 * 119.99465 * 0.02562 * 1 2 3
30 30 H 0.96991 * 120.00227 * 0.02562 * 9 7 2
31 31 H 1.09009 * 109.46822 * 60.00743 * 12 10 9
32 32 H 1.08998 * 109.47610 * 300.00830 * 12 10 9
33 33 H 1.00896 * 111.00221 * 56.05379 * 13 12 10
34 34 H 1.09000 * 109.47006 * 59.99928 * 14 13 12
35 35 H 1.09006 * 109.47149 * 300.00606 * 14 13 12
36 36 H 1.08997 * 109.63213 * 54.55753 * 17 15 14
37 37 H 1.08999 * 109.42738 * 294.41511 * 17 15 14
38 38 H 1.08996 * 109.45620 * 178.49407 * 18 17 15
39 39 H 1.09003 * 109.45783 * 58.52889 * 18 17 15
40 40 H 1.09001 * 109.49572 * 301.41616 * 19 18 17
41 41 H 1.09001 * 109.49729 * 181.32180 * 19 18 17
42 42 H 1.08998 * 109.58965 * 185.57942 * 20 19 18
43 43 H 1.09004 * 109.69648 * 65.22117 * 20 19 18
44 44 H 1.09006 * 109.47122 * 300.00323 * 24 22 21
45 45 H 1.09004 * 109.47577 * 59.99909 * 24 22 21
46 46 H 1.08996 * 109.47110 * 300.00258 * 25 24 22
47 47 H 1.09002 * 109.46986 * 60.00386 * 25 24 22
48 48 H 1.08997 * 109.47556 * 54.99951 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6176 0.0000
4 1 3.1020 1.6963 -1.2124
5 1 1.2833 2.7464 0.0006
6 1 3.1019 1.6962 1.2126
7 6 2.0088 -1.2034 0.0005
8 1 3.0888 -1.2035 0.0010
9 7 1.3232 -2.3907 0.0016
10 6 1.9971 -3.5580 0.0016
11 8 3.2101 -3.5579 0.0011
12 6 1.2435 -4.8630 0.0022
13 7 2.1981 -5.9796 0.0027
14 6 1.4977 -7.2709 0.0026
15 6 2.5226 -8.4069 0.0038
16 1 3.2465 -8.2480 0.8030
17 6 1.8058 -9.7496 0.2124
18 6 2.8189 -10.8886 0.0764
19 6 3.4171 -10.8761 -1.3322
20 6 4.1478 -9.5492 -1.5606
21 7 3.2178 -8.4445 -1.2901
22 6 3.0104 -7.4807 -2.2092
23 8 2.1621 -6.6348 -2.0201
24 6 3.8327 -7.4542 -3.4717
25 6 3.4008 -6.2685 -4.3369
26 6 4.2353 -6.2419 -5.6190
27 9 3.7648 -5.2283 -6.4607
28 9 5.5750 -5.9976 -5.2985
29 1 -0.4849 0.8401 -0.0004
30 1 0.3533 -2.3906 0.0016
31 1 0.6166 -4.9209 -0.8877
32 1 0.6171 -4.9205 0.8923
33 1 2.8329 -5.9123 0.7840
34 1 0.8732 -7.3454 -0.8875
35 1 0.8724 -7.3451 0.8924
36 1 1.0232 -9.8673 -0.5372
37 1 1.3631 -9.7734 1.2082
38 1 2.3192 -11.8416 0.2502
39 1 3.6143 -10.7566 0.8099
40 1 2.6193 -10.9832 -2.0672
41 1 4.1211 -11.7018 -1.4359
42 1 4.4904 -9.4937 -2.5938
43 1 5.0028 -9.4801 -0.8879
44 1 4.8875 -7.3520 -3.2163
45 1 3.6809 -8.3817 -4.0239
46 1 2.3461 -6.3702 -4.5923
47 1 3.5532 -5.3412 -3.7846
48 1 4.1525 -7.2030 -6.1264
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001280446792.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:45
Heat of formation + Delta-G solvation = -175.422401 kcal
Electronic energy + Delta-G solvation = -32022.754584 eV
Core-core repulsion = 27362.071388 eV
Total energy + Delta-G solvation = -4660.683196 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.181 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-49.87202 -47.91104 -41.41080 -40.06310 -38.23838 -36.74356 -35.85199 -34.58963
-33.58488 -33.28979 -32.46921 -28.97947 -28.12869 -26.81341 -25.67900 -24.36879
-23.69320 -22.41938 -21.49933 -21.11098 -20.04783 -19.74867 -18.49701 -18.24619
-17.86225 -17.71024 -17.14479 -16.67687 -16.66645 -16.37471 -16.26475 -15.92960
-15.42473 -15.25569 -15.05432 -14.98052 -14.76745 -14.60931 -14.31889 -14.28095
-14.21408 -13.78902 -13.64478 -13.54104 -13.28880 -13.11408 -13.09162 -12.96411
-12.75528 -12.69203 -12.45689 -12.14865 -12.13661 -12.03961 -11.78322 -11.72058
-11.51708 -11.48670 -11.38547 -10.32572 -10.02916 -9.81747 -9.39603 -8.85143
-8.47778 -5.96983 1.37443 1.38196 1.50041 1.99793 2.05655 2.19197
2.27915 2.98170 3.00042 3.19113 3.37459 3.56032 3.59482 3.66921
3.77310 3.97428 4.04977 4.12390 4.20695 4.30764 4.31625 4.33452
4.38045 4.41681 4.46620 4.56195 4.60377 4.66449 4.74987 4.81144
4.92357 4.94902 5.04380 5.09403 5.13322 5.16234 5.24160 5.28962
5.37874 5.53281 5.83309 5.91727 6.20419 6.59581 6.59951 6.72672
7.10989 7.55076 7.63904 8.11169 8.69938
Molecular weight = 347.18amu
Principal moments of inertia in cm(-1)
A = 0.008830 B = 0.003298 C = 0.002541
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3170.304422 B = 8488.391873 C =11018.250036
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C -0.014 4.014
3 Si 0.995 3.005
4 H -0.274 1.274
5 H -0.267 1.267
6 H -0.270 1.270
7 C -0.335 4.335
8 H 0.077 0.923
9 N -0.576 5.576
10 C 0.443 3.557
11 O -0.622 6.622
12 C 0.083 3.917
13 N -0.643 5.643
14 C 0.076 3.924
15 C 0.153 3.847
16 H 0.063 0.937
17 C -0.121 4.121
18 C -0.117 4.117
19 C -0.129 4.129
20 C 0.102 3.898
21 N -0.612 5.612
22 C 0.494 3.506
23 O -0.514 6.514
24 C -0.128 4.128
25 C -0.152 4.152
26 C 0.261 3.739
27 F -0.226 7.226
28 F -0.221 7.221
29 H 0.278 0.722
30 H 0.394 0.606
31 H 0.086 0.914
32 H 0.051 0.949
33 H 0.320 0.680
34 H 0.081 0.919
35 H 0.024 0.976
36 H 0.064 0.936
37 H 0.078 0.922
38 H 0.077 0.923
39 H 0.065 0.935
40 H 0.066 0.934
41 H 0.094 0.906
42 H 0.103 0.897
43 H 0.068 0.932
44 H 0.099 0.901
45 H 0.135 0.865
46 H 0.099 0.901
47 H 0.049 0.951
48 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.421 -28.133 -6.070 29.118
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.563 5.563
2 C -0.214 4.214
3 Si 0.818 3.182
4 H -0.199 1.199
5 H -0.191 1.191
6 H -0.195 1.195
7 C -0.465 4.465
8 H 0.095 0.905
9 N -0.213 5.213
10 C 0.230 3.770
11 O -0.508 6.508
12 C -0.050 4.050
13 N -0.275 5.275
14 C -0.052 4.052
15 C 0.049 3.951
16 H 0.081 0.919
17 C -0.160 4.160
18 C -0.155 4.155
19 C -0.167 4.167
20 C -0.020 4.020
21 N -0.348 5.348
22 C 0.281 3.719
23 O -0.388 6.388
24 C -0.168 4.168
25 C -0.191 4.191
26 C 0.208 3.792
27 F -0.207 7.207
28 F -0.202 7.202
29 H 0.087 0.913
30 H 0.228 0.772
31 H 0.104 0.896
32 H 0.069 0.931
33 H 0.138 0.862
34 H 0.099 0.901
35 H 0.042 0.958
36 H 0.082 0.918
37 H 0.097 0.903
38 H 0.096 0.904
39 H 0.084 0.916
40 H 0.084 0.916
41 H 0.113 0.887
42 H 0.121 0.879
43 H 0.086 0.914
44 H 0.118 0.882
45 H 0.153 0.847
46 H 0.117 0.883
47 H 0.068 0.932
48 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges 4.719 -27.464 -6.678 28.655
hybrid contribution -0.462 1.501 1.096 1.915
sum 4.257 -25.963 -5.582 26.895
Atomic orbital electron populations
1.69680 1.06887 1.29352 1.50409 1.26078 0.96592 1.02459 0.96243
0.84975 0.77781 0.76510 0.78961 1.19887 1.19149 1.19466 1.19631
0.92612 0.84129 1.50110 0.90542 1.41933 1.09171 1.04771 1.65445
1.20897 0.88252 0.86118 0.81694 1.90455 1.15835 1.88002 1.56520
1.21265 0.93963 0.88565 1.01205 1.60340 1.18571 1.00372 1.48196
1.22125 0.95842 0.87399 0.99870 1.21271 0.93464 0.94870 0.85462
0.91860 1.21948 0.98462 0.92976 1.02585 1.21505 0.98395 0.98044
0.97508 1.21899 1.00753 0.96856 0.97159 1.21952 0.91501 0.85373
1.03187 1.47951 1.45489 1.25795 1.15528 1.20753 0.84884 0.80726
0.85518 1.90838 1.34156 1.37777 1.76042 1.21569 1.01054 0.99921
0.94216 1.22312 1.01589 1.00395 0.94818 1.22426 0.75539 0.90982
0.90263 1.92957 1.88605 1.65643 1.73522 1.92959 1.37589 1.95895
1.93792 0.91267 0.77238 0.89559 0.93117 0.86213 0.90067 0.95814
0.91768 0.90314 0.90404 0.91639 0.91566 0.88708 0.87884 0.91415
0.88232 0.84682 0.88282 0.93238 0.81800
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -52.70 13.05 21.67 0.28 -52.42 16
2 C -0.01 -0.81 5.50 84.93 0.47 -0.35 16
3 Si 0.99 45.40 29.55 68.60 2.03 47.43 16
4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16
5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16
6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16
7 C -0.34 -20.45 9.68 84.04 0.81 -19.64 16
8 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16
9 N -0.58 -32.48 5.29 -306.97 -1.62 -34.10 16
10 C 0.44 23.59 7.82 87.66 0.69 24.28 16
11 O -0.62 -37.66 15.78 -3.08 -0.05 -37.71 16
12 C 0.08 3.40 5.78 85.56 0.49 3.89 16
13 N -0.64 -23.57 3.54 -517.93 -1.83 -25.40 16
14 C 0.08 2.09 4.30 86.30 0.37 2.46 16
15 C 0.15 3.18 3.09 45.12 0.14 3.32 16
16 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16
17 C -0.12 -1.71 5.39 30.82 0.17 -1.54 16
18 C -0.12 -1.12 5.88 30.62 0.18 -0.94 16
19 C -0.13 -1.00 6.08 30.67 0.19 -0.82 16
20 C 0.10 1.14 6.32 86.36 0.55 1.68 16
21 N -0.61 -12.02 2.97 -794.22 -2.36 -14.38 16
22 C 0.49 12.55 7.38 87.66 0.65 13.19 16
23 O -0.51 -17.84 9.48 -3.05 -0.03 -17.86 16
24 C -0.13 -2.30 4.04 29.85 0.12 -2.18 16
25 C -0.15 -3.62 4.73 30.59 0.14 -3.47 16
26 C 0.26 5.10 5.29 71.98 0.38 5.48 16
27 F -0.23 -5.99 17.34 44.97 0.78 -5.21 16
28 F -0.22 -5.40 17.02 44.97 0.77 -4.63 16
29 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16
30 H 0.39 21.30 7.90 -92.71 -0.73 20.57 16
31 H 0.09 3.57 7.88 -2.38 -0.02 3.55 16
32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16
33 H 0.32 12.27 8.42 -89.70 -0.75 11.51 16
34 H 0.08 2.48 6.31 -2.39 -0.02 2.47 16
35 H 0.02 0.60 8.13 -2.38 -0.02 0.59 16
36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16
39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16
41 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16
42 H 0.10 0.72 5.97 -2.39 -0.01 0.70 16
43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
44 H 0.10 1.75 7.92 -2.38 -0.02 1.74 16
45 H 0.14 1.13 7.44 -2.38 -0.02 1.11 16
46 H 0.10 2.32 8.10 -2.39 -0.02 2.30 16
47 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16
48 H 0.17 1.37 8.14 -2.39 -0.02 1.35 16
Total: -1.00 -80.94 389.64 2.82 -78.12
By element:
Atomic # 1 Polarization: 41.29 SS G_CDS: -0.49 Total: 40.80 kcal
Atomic # 6 Polarization: 20.03 SS G_CDS: 5.34 Total: 25.37 kcal
Atomic # 7 Polarization: -120.77 SS G_CDS: -5.53 Total: -126.30 kcal
Atomic # 8 Polarization: -55.50 SS G_CDS: -0.08 Total: -55.58 kcal
Atomic # 9 Polarization: -11.39 SS G_CDS: 1.54 Total: -9.85 kcal
Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal
Total: -80.94 2.82 -78.12 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001280446792.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.298 kcal
(2) G-P(sol) polarization free energy of solvation -80.939 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.238 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.124 kcal
(6) G-S(sol) free energy of system = (1) + (5) -175.422 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds