Wall clock time and date at job start Wed Apr 1 2020 04:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00437 * 2 1 4 4 H 1.48494 * 109.47477 * 239.99432 * 3 2 1 5 5 H 1.48494 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46951 * 119.99753 * 3 2 1 7 7 C 1.38959 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00399 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99579 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99643 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99767 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99916 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47053 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00062 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47359 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.70347 * 51.11257 * 15 14 13 17 17 C 1.53628 * 109.66545 * 171.70919 * 15 14 13 18 18 C 1.53044 * 109.24090 * 174.54897 * 17 15 14 19 19 C 1.53042 * 109.53720 * 298.51060 * 18 17 15 20 20 C 1.53193 * 109.31549 * 61.36347 * 19 18 17 21 21 N 1.46920 * 108.77625 * 305.36897 * 20 19 18 22 22 C 1.34780 * 120.63103 * 233.58412 * 21 20 19 23 23 O 1.21286 * 120.00368 * 174.03853 * 22 21 20 24 24 C 1.50696 * 119.99742 * 354.03622 * 22 21 20 25 25 C 1.52999 * 109.47295 * 180.02562 * 24 22 21 26 26 C 1.52995 * 109.47326 * 180.02562 * 25 24 22 27 27 F 1.39903 * 109.47519 * 174.99860 * 26 25 24 28 28 F 1.39902 * 109.47288 * 294.99903 * 26 25 24 29 29 H 0.97004 * 119.99465 * 0.02562 * 1 2 3 30 30 H 0.96991 * 120.00227 * 0.02562 * 9 7 2 31 31 H 1.09009 * 109.46822 * 60.00743 * 12 10 9 32 32 H 1.08998 * 109.47610 * 300.00830 * 12 10 9 33 33 H 1.00896 * 111.00221 * 56.05379 * 13 12 10 34 34 H 1.09000 * 109.47006 * 59.99928 * 14 13 12 35 35 H 1.09006 * 109.47149 * 300.00606 * 14 13 12 36 36 H 1.08997 * 109.63213 * 54.55753 * 17 15 14 37 37 H 1.08999 * 109.42738 * 294.41511 * 17 15 14 38 38 H 1.08996 * 109.45620 * 178.49407 * 18 17 15 39 39 H 1.09003 * 109.45783 * 58.52889 * 18 17 15 40 40 H 1.09001 * 109.49572 * 301.41616 * 19 18 17 41 41 H 1.09001 * 109.49729 * 181.32180 * 19 18 17 42 42 H 1.08998 * 109.58965 * 185.57942 * 20 19 18 43 43 H 1.09004 * 109.69648 * 65.22117 * 20 19 18 44 44 H 1.09006 * 109.47122 * 300.00323 * 24 22 21 45 45 H 1.09004 * 109.47577 * 59.99909 * 24 22 21 46 46 H 1.08996 * 109.47110 * 300.00258 * 25 24 22 47 47 H 1.09002 * 109.46986 * 60.00386 * 25 24 22 48 48 H 1.08997 * 109.47556 * 54.99951 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2833 2.7464 0.0006 6 1 3.1019 1.6962 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5580 0.0016 11 8 3.2101 -3.5579 0.0011 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9796 0.0027 14 6 1.4977 -7.2709 0.0026 15 6 2.5226 -8.4069 0.0038 16 1 3.2465 -8.2480 0.8030 17 6 1.8058 -9.7496 0.2124 18 6 2.8189 -10.8886 0.0764 19 6 3.4171 -10.8761 -1.3322 20 6 4.1478 -9.5492 -1.5606 21 7 3.2178 -8.4445 -1.2901 22 6 3.0104 -7.4807 -2.2092 23 8 2.1621 -6.6348 -2.0201 24 6 3.8327 -7.4542 -3.4717 25 6 3.4008 -6.2685 -4.3369 26 6 4.2353 -6.2419 -5.6190 27 9 3.7648 -5.2283 -6.4607 28 9 5.5750 -5.9976 -5.2985 29 1 -0.4849 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0016 31 1 0.6166 -4.9209 -0.8877 32 1 0.6171 -4.9205 0.8923 33 1 2.8329 -5.9123 0.7840 34 1 0.8732 -7.3454 -0.8875 35 1 0.8724 -7.3451 0.8924 36 1 1.0232 -9.8673 -0.5372 37 1 1.3631 -9.7734 1.2082 38 1 2.3192 -11.8416 0.2502 39 1 3.6143 -10.7566 0.8099 40 1 2.6193 -10.9832 -2.0672 41 1 4.1211 -11.7018 -1.4359 42 1 4.4904 -9.4937 -2.5938 43 1 5.0028 -9.4801 -0.8879 44 1 4.8875 -7.3520 -3.2163 45 1 3.6809 -8.3817 -4.0239 46 1 2.3461 -6.3702 -4.5923 47 1 3.5532 -5.3412 -3.7846 48 1 4.1525 -7.2030 -6.1264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280446792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:45 Heat of formation + Delta-G solvation = -175.422401 kcal Electronic energy + Delta-G solvation = -32022.754584 eV Core-core repulsion = 27362.071388 eV Total energy + Delta-G solvation = -4660.683196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.87202 -47.91104 -41.41080 -40.06310 -38.23838 -36.74356 -35.85199 -34.58963 -33.58488 -33.28979 -32.46921 -28.97947 -28.12869 -26.81341 -25.67900 -24.36879 -23.69320 -22.41938 -21.49933 -21.11098 -20.04783 -19.74867 -18.49701 -18.24619 -17.86225 -17.71024 -17.14479 -16.67687 -16.66645 -16.37471 -16.26475 -15.92960 -15.42473 -15.25569 -15.05432 -14.98052 -14.76745 -14.60931 -14.31889 -14.28095 -14.21408 -13.78902 -13.64478 -13.54104 -13.28880 -13.11408 -13.09162 -12.96411 -12.75528 -12.69203 -12.45689 -12.14865 -12.13661 -12.03961 -11.78322 -11.72058 -11.51708 -11.48670 -11.38547 -10.32572 -10.02916 -9.81747 -9.39603 -8.85143 -8.47778 -5.96983 1.37443 1.38196 1.50041 1.99793 2.05655 2.19197 2.27915 2.98170 3.00042 3.19113 3.37459 3.56032 3.59482 3.66921 3.77310 3.97428 4.04977 4.12390 4.20695 4.30764 4.31625 4.33452 4.38045 4.41681 4.46620 4.56195 4.60377 4.66449 4.74987 4.81144 4.92357 4.94902 5.04380 5.09403 5.13322 5.16234 5.24160 5.28962 5.37874 5.53281 5.83309 5.91727 6.20419 6.59581 6.59951 6.72672 7.10989 7.55076 7.63904 8.11169 8.69938 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.003298 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.304422 B = 8488.391873 C =11018.250036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.576 5.576 10 C 0.443 3.557 11 O -0.622 6.622 12 C 0.083 3.917 13 N -0.643 5.643 14 C 0.076 3.924 15 C 0.153 3.847 16 H 0.063 0.937 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.129 4.129 20 C 0.102 3.898 21 N -0.612 5.612 22 C 0.494 3.506 23 O -0.514 6.514 24 C -0.128 4.128 25 C -0.152 4.152 26 C 0.261 3.739 27 F -0.226 7.226 28 F -0.221 7.221 29 H 0.278 0.722 30 H 0.394 0.606 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.320 0.680 34 H 0.081 0.919 35 H 0.024 0.976 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.135 0.865 46 H 0.099 0.901 47 H 0.049 0.951 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 -28.133 -6.070 29.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.199 1.199 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.213 5.213 10 C 0.230 3.770 11 O -0.508 6.508 12 C -0.050 4.050 13 N -0.275 5.275 14 C -0.052 4.052 15 C 0.049 3.951 16 H 0.081 0.919 17 C -0.160 4.160 18 C -0.155 4.155 19 C -0.167 4.167 20 C -0.020 4.020 21 N -0.348 5.348 22 C 0.281 3.719 23 O -0.388 6.388 24 C -0.168 4.168 25 C -0.191 4.191 26 C 0.208 3.792 27 F -0.207 7.207 28 F -0.202 7.202 29 H 0.087 0.913 30 H 0.228 0.772 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.118 0.882 45 H 0.153 0.847 46 H 0.117 0.883 47 H 0.068 0.932 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.719 -27.464 -6.678 28.655 hybrid contribution -0.462 1.501 1.096 1.915 sum 4.257 -25.963 -5.582 26.895 Atomic orbital electron populations 1.69680 1.06887 1.29352 1.50409 1.26078 0.96592 1.02459 0.96243 0.84975 0.77781 0.76510 0.78961 1.19887 1.19149 1.19466 1.19631 0.92612 0.84129 1.50110 0.90542 1.41933 1.09171 1.04771 1.65445 1.20897 0.88252 0.86118 0.81694 1.90455 1.15835 1.88002 1.56520 1.21265 0.93963 0.88565 1.01205 1.60340 1.18571 1.00372 1.48196 1.22125 0.95842 0.87399 0.99870 1.21271 0.93464 0.94870 0.85462 0.91860 1.21948 0.98462 0.92976 1.02585 1.21505 0.98395 0.98044 0.97508 1.21899 1.00753 0.96856 0.97159 1.21952 0.91501 0.85373 1.03187 1.47951 1.45489 1.25795 1.15528 1.20753 0.84884 0.80726 0.85518 1.90838 1.34156 1.37777 1.76042 1.21569 1.01054 0.99921 0.94216 1.22312 1.01589 1.00395 0.94818 1.22426 0.75539 0.90982 0.90263 1.92957 1.88605 1.65643 1.73522 1.92959 1.37589 1.95895 1.93792 0.91267 0.77238 0.89559 0.93117 0.86213 0.90067 0.95814 0.91768 0.90314 0.90404 0.91639 0.91566 0.88708 0.87884 0.91415 0.88232 0.84682 0.88282 0.93238 0.81800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.70 13.05 21.67 0.28 -52.42 16 2 C -0.01 -0.81 5.50 84.93 0.47 -0.35 16 3 Si 0.99 45.40 29.55 68.60 2.03 47.43 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.34 -20.45 9.68 84.04 0.81 -19.64 16 8 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 9 N -0.58 -32.48 5.29 -306.97 -1.62 -34.10 16 10 C 0.44 23.59 7.82 87.66 0.69 24.28 16 11 O -0.62 -37.66 15.78 -3.08 -0.05 -37.71 16 12 C 0.08 3.40 5.78 85.56 0.49 3.89 16 13 N -0.64 -23.57 3.54 -517.93 -1.83 -25.40 16 14 C 0.08 2.09 4.30 86.30 0.37 2.46 16 15 C 0.15 3.18 3.09 45.12 0.14 3.32 16 16 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16 17 C -0.12 -1.71 5.39 30.82 0.17 -1.54 16 18 C -0.12 -1.12 5.88 30.62 0.18 -0.94 16 19 C -0.13 -1.00 6.08 30.67 0.19 -0.82 16 20 C 0.10 1.14 6.32 86.36 0.55 1.68 16 21 N -0.61 -12.02 2.97 -794.22 -2.36 -14.38 16 22 C 0.49 12.55 7.38 87.66 0.65 13.19 16 23 O -0.51 -17.84 9.48 -3.05 -0.03 -17.86 16 24 C -0.13 -2.30 4.04 29.85 0.12 -2.18 16 25 C -0.15 -3.62 4.73 30.59 0.14 -3.47 16 26 C 0.26 5.10 5.29 71.98 0.38 5.48 16 27 F -0.23 -5.99 17.34 44.97 0.78 -5.21 16 28 F -0.22 -5.40 17.02 44.97 0.77 -4.63 16 29 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.39 21.30 7.90 -92.71 -0.73 20.57 16 31 H 0.09 3.57 7.88 -2.38 -0.02 3.55 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.32 12.27 8.42 -89.70 -0.75 11.51 16 34 H 0.08 2.48 6.31 -2.39 -0.02 2.47 16 35 H 0.02 0.60 8.13 -2.38 -0.02 0.59 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.10 0.72 5.97 -2.39 -0.01 0.70 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.10 1.75 7.92 -2.38 -0.02 1.74 16 45 H 0.14 1.13 7.44 -2.38 -0.02 1.11 16 46 H 0.10 2.32 8.10 -2.39 -0.02 2.30 16 47 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 48 H 0.17 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -80.94 389.64 2.82 -78.12 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: -0.49 Total: 40.80 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 5.34 Total: 25.37 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -5.53 Total: -126.30 kcal Atomic # 8 Polarization: -55.50 SS G_CDS: -0.08 Total: -55.58 kcal Atomic # 9 Polarization: -11.39 SS G_CDS: 1.54 Total: -9.85 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -80.94 2.82 -78.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280446792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.298 kcal (2) G-P(sol) polarization free energy of solvation -80.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds