Wall clock time and date at job start Wed Apr 1 2020 04:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.44303 * 111.00341 * 66.04254 * 13 12 10 15 15 C 1.53988 * 108.31758 * 221.35272 * 14 13 12 16 16 C 1.45871 * 112.66208 * 278.59872 * 15 14 13 17 17 C 1.54525 * 111.67258 * 61.50184 * 16 15 14 18 18 H 1.09000 * 109.57295 * 42.57192 * 17 16 15 19 19 N 1.46505 * 109.57102 * 162.81877 * 17 16 15 20 20 C 1.34780 * 119.99972 * 274.99844 * 19 17 16 21 21 O 1.21283 * 119.99696 * 0.02562 * 20 19 17 22 22 C 1.50692 * 120.00146 * 180.02562 * 20 19 17 23 23 C 1.52997 * 109.47207 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47036 * 180.02562 * 23 22 20 25 25 F 1.39902 * 109.47599 * 64.99706 * 24 23 22 26 26 F 1.39899 * 109.47300 * 184.99794 * 24 23 22 27 27 C 1.50540 * 108.86189 * 282.75651 * 17 16 15 28 28 C 1.47950 * 111.00332 * 193.46123 * 13 12 10 29 29 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 32 32 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 33 33 H 1.09005 * 109.69556 * 341.05585 * 14 13 12 34 34 H 1.08997 * 109.69525 * 101.64911 * 14 13 12 35 35 H 1.09000 * 108.84290 * 39.42286 * 15 14 13 36 36 H 1.08995 * 108.84196 * 157.88597 * 15 14 13 37 37 H 1.09000 * 109.03971 * 182.06221 * 16 15 14 38 38 H 1.09004 * 109.04208 * 300.93843 * 16 15 14 39 39 H 0.97000 * 120.00106 * 95.00492 * 19 17 16 40 40 H 1.09001 * 109.46797 * 299.99721 * 22 20 19 41 41 H 1.09001 * 109.47348 * 59.99747 * 22 20 19 42 42 H 1.09001 * 109.46809 * 299.99463 * 23 22 20 43 43 H 1.08995 * 109.47395 * 59.99989 * 23 22 20 44 44 H 1.09000 * 109.47297 * 304.99191 * 24 23 22 45 45 H 1.08999 * 108.78660 * 212.64110 * 27 17 16 46 46 H 1.08997 * 108.78582 * 330.85398 * 27 17 16 47 47 H 1.08999 * 108.70791 * 313.18056 * 28 13 12 48 48 H 1.09002 * 108.70981 * 71.18421 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.9501 -6.0112 1.2497 15 6 4.4174 -6.3344 0.9125 16 6 4.6482 -7.7616 0.7179 17 6 3.8216 -8.3174 -0.4634 18 1 3.8600 -7.6169 -1.2976 19 7 4.3710 -9.6094 -0.8819 20 6 5.4003 -9.6544 -1.7509 21 8 5.8719 -8.6252 -2.1860 22 6 5.9651 -10.9834 -2.1818 23 6 7.1165 -10.7542 -3.1629 24 6 7.6895 -12.1035 -3.6008 25 9 6.7217 -12.8087 -4.3242 26 9 8.8132 -11.8934 -4.4073 27 6 2.3943 -8.4938 -0.0183 28 6 1.5218 -7.2569 -0.2971 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6167 -4.9162 0.9030 32 1 0.6174 -4.9252 -0.8769 33 1 2.8914 -5.0400 1.7411 34 1 2.5461 -6.7811 1.9070 35 1 4.6938 -5.8054 0.0005 36 1 5.0511 -5.9848 1.7275 37 1 5.7072 -7.9267 0.5197 38 1 4.3707 -8.2940 1.6277 39 1 3.9940 -10.4325 -0.5336 40 1 6.3340 -11.5216 -1.3086 41 1 5.1849 -11.5696 -2.6672 42 1 6.7481 -10.2158 -4.0361 43 1 7.8967 -10.1682 -2.6771 44 1 7.9765 -12.6793 -2.7209 45 1 1.9670 -9.3498 -0.5406 46 1 2.3832 -8.6974 1.0524 47 1 0.6130 -7.3281 0.3005 48 1 1.2447 -7.2549 -1.3513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280745872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:26 Heat of formation + Delta-G solvation = -181.382849 kcal Electronic energy + Delta-G solvation = -30684.140336 eV Core-core repulsion = 26023.198675 eV Total energy + Delta-G solvation = -4660.941660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.32057 -47.33337 -40.31840 -39.05758 -37.66328 -35.37841 -34.15071 -33.80088 -33.09924 -31.56212 -31.15855 -28.23211 -27.21255 -25.34751 -24.84211 -23.65170 -22.67695 -20.65803 -20.49593 -19.83990 -19.07465 -18.04489 -17.83995 -17.82170 -17.23499 -16.55226 -16.20427 -16.02039 -15.82499 -15.28895 -15.00432 -14.63678 -14.38639 -14.26158 -14.08103 -13.93764 -13.77172 -13.67505 -13.52523 -13.36068 -13.04416 -12.80629 -12.63091 -12.58456 -12.15142 -11.86431 -11.74423 -11.63346 -11.46228 -11.30319 -11.25180 -11.03605 -10.89761 -10.72884 -10.41650 -10.36088 -10.32476 -10.17552 -9.98233 -9.43637 -9.13833 -8.34553 -7.91165 -7.75236 -6.37702 -3.78008 2.44225 2.82900 3.20784 3.29017 3.34847 3.48604 3.83203 3.93490 3.98708 4.01768 4.16367 4.26809 4.53155 4.61036 4.66714 4.80008 4.89989 4.96541 5.05681 5.11779 5.24162 5.28632 5.33419 5.38481 5.39561 5.57050 5.58881 5.66957 5.69679 5.83315 5.91436 5.99132 6.01208 6.07653 6.21933 6.33684 6.34359 6.44431 6.56580 6.90732 7.29379 7.36648 7.59201 7.61931 8.05257 8.11132 8.66907 9.22984 9.59695 10.11947 10.80227 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.001858 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.540691 B =15069.283165 C =15935.372665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.443 3.557 11 O -0.572 6.572 12 C 0.050 3.950 13 N -0.528 5.528 14 C 0.077 3.923 15 C -0.109 4.109 16 C -0.114 4.114 17 C 0.148 3.852 18 H 0.104 0.896 19 N -0.728 5.728 20 C 0.511 3.489 21 O -0.528 6.528 22 C -0.142 4.142 23 C -0.158 4.158 24 C 0.262 3.738 25 F -0.207 7.207 26 F -0.205 7.205 27 C -0.124 4.124 28 C 0.067 3.933 29 H 0.270 0.730 30 H 0.391 0.609 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.028 0.972 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.396 0.604 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.034 0.966 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 -27.236 0.194 27.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.425 4.425 8 H 0.120 0.880 9 N -0.205 5.205 10 C 0.229 3.771 11 O -0.455 6.455 12 C -0.081 4.081 13 N -0.253 5.253 14 C -0.051 4.051 15 C -0.148 4.148 16 C -0.153 4.153 17 C 0.045 3.955 18 H 0.122 0.878 19 N -0.379 5.379 20 C 0.297 3.703 21 O -0.404 6.404 22 C -0.182 4.182 23 C -0.196 4.196 24 C 0.208 3.792 25 F -0.189 7.189 26 F -0.186 7.186 27 C -0.162 4.162 28 C -0.061 4.061 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.229 0.771 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.128 0.872 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.052 0.948 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.280 -26.256 -0.507 27.251 hybrid contribution -1.110 0.251 0.718 1.346 sum 6.170 -26.005 0.211 26.728 Atomic orbital electron populations 1.69614 1.05901 1.28021 1.51004 1.25244 0.95627 0.99659 0.97535 0.85871 0.79199 0.80919 0.78377 1.20443 1.21025 1.19474 1.19687 0.93328 0.82224 1.47283 0.87952 1.41869 1.09127 1.04587 1.64895 1.19760 0.88512 0.84519 0.84349 1.90533 1.13502 1.86906 1.54542 1.21845 0.93824 0.91134 1.01314 1.60282 1.26692 1.01747 1.36584 1.21690 0.93502 1.00694 0.89236 1.20298 0.96197 0.94833 1.03432 1.20912 0.99933 0.97634 0.96781 1.20809 0.91657 0.84290 0.98785 0.87757 1.46215 1.35374 1.09713 1.46574 1.20396 0.80097 0.91047 0.78779 1.90792 1.59130 1.35561 1.54929 1.21576 0.99259 0.96676 1.00676 1.22421 0.99784 0.95393 1.02022 1.21950 0.75602 0.93785 0.87825 1.92990 1.64329 1.80625 1.80927 1.93001 1.53074 1.95862 1.76710 1.21634 0.94757 0.98050 1.01755 1.22281 0.94526 0.88003 1.01245 0.91982 0.77594 0.93586 0.89592 0.90489 0.95429 0.89626 0.92527 0.92275 0.93110 0.77061 0.88333 0.88030 0.88440 0.87765 0.87206 0.90906 0.91636 0.94758 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 2 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -14.36 5.29 -10.96 -0.06 -14.42 16 10 C 0.44 10.37 7.14 -10.99 -0.08 10.29 16 11 O -0.57 -15.18 14.31 5.55 0.08 -15.10 16 12 C 0.05 0.88 5.31 -4.98 -0.03 0.85 16 13 N -0.53 -8.44 3.75 -236.07 -0.88 -9.33 16 14 C 0.08 1.21 4.46 -4.70 -0.02 1.19 16 15 C -0.11 -1.69 5.26 -29.59 -0.16 -1.84 16 16 C -0.11 -1.40 4.95 -29.30 -0.15 -1.54 16 17 C 0.15 1.68 2.14 -68.36 -0.15 1.53 16 18 H 0.10 1.61 7.23 -51.93 -0.38 1.23 16 19 N -0.73 -6.07 5.00 -54.22 -0.27 -6.34 16 20 C 0.51 5.07 7.73 -10.99 -0.08 4.99 16 21 O -0.53 -7.98 15.65 5.56 0.09 -7.89 16 22 C -0.14 -0.78 5.62 -27.89 -0.16 -0.94 16 23 C -0.16 -1.08 4.73 -26.73 -0.13 -1.21 16 24 C 0.26 1.57 5.29 37.16 0.20 1.77 16 25 F -0.21 -1.63 17.02 2.25 0.04 -1.59 16 26 F -0.21 -1.80 17.34 2.25 0.04 -1.76 16 27 C -0.12 -1.15 4.87 -27.49 -0.13 -1.29 16 28 C 0.07 0.80 5.37 -2.77 -0.01 0.78 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 31 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 33 H 0.08 1.44 6.32 -51.93 -0.33 1.12 16 34 H 0.03 0.37 6.79 -51.93 -0.35 0.02 16 35 H 0.09 1.66 7.97 -51.93 -0.41 1.24 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 38 H 0.05 0.53 7.59 -51.93 -0.39 0.14 16 39 H 0.40 1.90 8.53 -40.82 -0.35 1.56 16 40 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.10 0.43 7.94 -51.93 -0.41 0.02 16 42 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 43 H 0.10 0.76 8.10 -51.93 -0.42 0.34 16 44 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.52 7.90 -51.93 -0.41 0.11 16 46 H 0.06 0.56 6.66 -51.93 -0.35 0.22 16 47 H 0.03 0.37 8.02 -51.93 -0.42 -0.05 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 391.62 15.07 5.90 5.90 Total: -1.00 -34.40 391.62 -7.92 -42.32 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -7.42 Total: 9.31 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -1.13 Total: 6.62 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.49 Total: -54.10 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.17 Total: -22.99 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.08 Total: -3.35 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.40 -7.92 -42.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280745872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.062 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds