Wall clock time and date at job start Wed Apr 1 2020 04:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86793 * 120.00131 * 2 1 4 4 H 1.48503 * 109.47137 * 239.99982 * 3 2 1 5 5 H 1.48499 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47382 * 120.00328 * 3 2 1 7 7 C 1.38950 * 119.99449 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99322 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00660 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00324 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00108 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99943 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47064 * 179.97438 * 12 10 9 14 14 C 1.46896 * 110.99926 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47190 * 174.73932 * 14 13 12 16 16 H 1.09000 * 109.58538 * 59.45088 * 15 14 13 17 17 C 1.53193 * 109.58678 * 299.17185 * 15 14 13 18 18 C 1.53067 * 109.29572 * 185.71794 * 17 15 14 19 19 C 1.53046 * 109.66107 * 61.15342 * 18 17 15 20 20 C 1.53201 * 109.30743 * 298.70076 * 19 18 17 21 21 N 1.46922 * 109.58821 * 179.73584 * 15 14 13 22 22 C 1.34781 * 120.63185 * 353.37802 * 21 15 14 23 23 O 1.21552 * 119.99457 * 5.96149 * 22 21 15 24 24 C 1.47829 * 119.99947 * 185.97150 * 22 21 15 25 25 C 1.39941 * 120.94321 * 38.27939 * 24 22 21 26 26 N 1.32146 * 118.92681 * 179.72212 * 25 24 22 27 27 C 1.31868 * 120.96246 * 0.56236 * 26 25 24 28 28 N 1.31867 * 122.10059 * 359.71083 * 27 26 25 29 29 C 1.32142 * 120.96328 * 359.97438 * 28 27 26 30 30 H 0.97003 * 120.00066 * 359.97438 * 1 2 3 31 31 H 0.97008 * 119.99517 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47080 * 59.99868 * 12 10 9 33 33 H 1.09001 * 109.47205 * 299.99982 * 12 10 9 34 34 H 1.00901 * 110.99853 * 56.04539 * 13 12 10 35 35 H 1.09001 * 109.47271 * 294.73881 * 14 13 12 36 36 H 1.09000 * 109.47261 * 54.74041 * 14 13 12 37 37 H 1.09006 * 109.49511 * 305.52635 * 17 15 14 38 38 H 1.09005 * 109.49888 * 65.62334 * 17 15 14 39 39 H 1.08997 * 109.35203 * 301.12722 * 18 17 15 40 40 H 1.09000 * 109.44549 * 181.23568 * 18 17 15 41 41 H 1.08997 * 109.49858 * 178.75154 * 19 18 17 42 42 H 1.09002 * 109.52479 * 58.66400 * 19 18 17 43 43 H 1.08993 * 109.58731 * 294.84420 * 20 19 18 44 44 H 1.09001 * 109.57980 * 174.42176 * 20 19 18 45 45 H 1.08001 * 120.53647 * 359.97376 * 25 24 22 46 46 H 1.08006 * 118.95151 * 179.72520 * 27 26 25 47 47 H 1.07999 * 120.53988 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0016 10 6 1.9971 -3.5579 0.0026 11 8 3.2100 -3.5579 0.0022 12 6 1.2435 -4.8630 0.0044 13 7 2.1981 -5.9796 0.0047 14 6 1.4978 -7.2708 0.0070 15 6 2.5171 -8.4042 -0.1251 16 1 3.2197 -8.3625 0.7072 17 6 3.2778 -8.2593 -1.4469 18 6 4.1926 -9.4713 -1.6395 19 6 3.3503 -10.7476 -1.7007 20 6 2.5930 -10.9186 -0.3800 21 7 1.8198 -9.6973 -0.1167 22 6 0.4960 -9.7621 0.1282 23 8 -0.1525 -8.7399 0.2375 24 6 -0.1670 -11.0764 0.2643 25 6 0.4697 -12.1397 0.9140 26 7 -0.1620 -13.2958 1.0178 27 6 -1.3685 -13.4575 0.5107 28 7 -2.0023 -12.4844 -0.1139 29 6 -1.4472 -11.2939 -0.2578 30 1 -0.4850 0.8401 0.0004 31 1 0.3532 -2.3906 0.0024 32 1 0.6165 -4.9216 -0.8852 33 1 0.6172 -4.9197 0.8947 34 1 2.8336 -5.9118 0.7855 35 1 0.9475 -7.3841 0.9411 36 1 0.8021 -7.3084 -0.8313 37 1 2.5671 -8.2076 -2.2718 38 1 3.8765 -7.3487 -1.4243 39 1 4.8884 -9.5352 -0.8029 40 1 4.7514 -9.3601 -2.5688 41 1 4.0023 -11.6065 -1.8600 42 1 2.6374 -10.6746 -2.5220 43 1 3.3035 -11.0829 0.4300 44 1 1.9169 -11.7703 -0.4542 45 1 1.4598 -12.0164 1.3275 46 1 -1.8531 -14.4176 0.6104 47 1 -1.9726 -10.5017 -0.7703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281860169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:50 Heat of formation + Delta-G solvation = 3.636735 kcal Electronic energy + Delta-G solvation = -30196.691967 eV Core-core repulsion = 25994.462544 eV Total energy + Delta-G solvation = -4202.229423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.89035 -40.48417 -38.19478 -37.70854 -35.58335 -34.43341 -33.85442 -33.50710 -32.53825 -31.37077 -31.06783 -27.79761 -26.35722 -25.27576 -24.99522 -24.56976 -23.50399 -21.88333 -21.38309 -19.90108 -19.12989 -18.29005 -18.15134 -17.82093 -17.39486 -16.44171 -15.95021 -15.85053 -15.32300 -15.06335 -14.92571 -14.73727 -14.50808 -14.33416 -14.19105 -14.11083 -13.88977 -13.69783 -13.35540 -13.31718 -13.06741 -12.46680 -12.25136 -12.06666 -11.84150 -11.54357 -11.47188 -11.42376 -11.22852 -11.14862 -10.96998 -10.90242 -10.76315 -10.41279 -10.22388 -10.17067 -9.85734 -9.68929 -9.45350 -8.95871 -8.36381 -7.92701 -7.83244 -6.36872 -3.77677 -0.02120 0.46214 2.25117 2.45288 3.20536 3.23040 3.28284 3.32761 3.50683 3.59956 3.84186 3.94811 3.97774 4.16690 4.27653 4.38354 4.49043 4.55595 4.61014 4.76150 4.78530 4.95422 5.02521 5.14498 5.17122 5.24293 5.28167 5.32458 5.43601 5.59597 5.62258 5.70964 5.81680 5.86335 5.92013 6.01811 6.07995 6.15627 6.27060 6.28091 6.34318 6.43939 6.92366 7.30781 7.43284 7.59168 7.68534 7.81214 8.11277 8.66805 9.22527 9.60185 10.11851 10.80899 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.002070 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.002022 B =13521.720663 C =14759.768460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.585 6.585 12 C 0.057 3.943 13 N -0.674 5.674 14 C 0.068 3.932 15 C 0.152 3.848 16 H 0.076 0.924 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.135 4.135 20 C 0.098 3.902 21 N -0.599 5.599 22 C 0.564 3.436 23 O -0.512 6.512 24 C -0.236 4.236 25 C 0.178 3.822 26 N -0.522 5.522 27 C 0.310 3.690 28 N -0.519 5.519 29 C 0.204 3.796 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.344 0.656 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.176 0.824 46 H 0.202 0.798 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.665 -29.222 -0.697 29.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.469 6.469 12 C -0.075 4.075 13 N -0.308 5.308 14 C -0.061 4.061 15 C 0.050 3.950 16 H 0.094 0.906 17 C -0.160 4.160 18 C -0.161 4.161 19 C -0.173 4.173 20 C -0.025 4.025 21 N -0.332 5.332 22 C 0.351 3.649 23 O -0.387 6.387 24 C -0.243 4.243 25 C 0.011 3.989 26 N -0.235 5.235 27 C 0.023 3.977 28 N -0.232 5.232 29 C 0.037 3.963 30 H 0.081 0.919 31 H 0.226 0.774 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.162 0.838 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.193 0.807 46 H 0.219 0.781 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.611 -29.392 -1.225 29.424 hybrid contribution -0.143 1.485 0.814 1.699 sum 0.468 -27.907 -0.411 27.914 Atomic orbital electron populations 1.69611 1.05918 1.28194 1.50634 1.25266 0.95640 0.99706 0.97437 0.85916 0.78734 0.80512 0.79020 1.19919 1.21021 1.19957 1.19646 0.93312 0.82287 1.47610 0.88010 1.41865 1.09233 1.04604 1.64445 1.19862 0.88371 0.84769 0.84221 1.90503 1.13782 1.87152 1.55493 1.21564 0.94185 0.90510 1.01275 1.60062 1.19273 1.00514 1.50952 1.22529 0.93589 0.87101 1.02895 1.21359 0.93946 0.80992 0.98751 0.90608 1.21901 0.98809 0.98923 0.96382 1.21583 0.97919 0.94164 1.02402 1.21928 0.99366 0.99081 0.96915 1.22116 0.95394 0.86580 0.98393 1.48085 1.07156 1.08431 1.69565 1.17903 0.81893 0.87739 0.77402 1.90918 1.64148 1.33915 1.49754 1.21893 0.99038 0.97166 1.06231 1.23663 0.98756 0.86697 0.89785 1.68518 1.10786 1.24435 1.19760 1.25282 0.87357 0.98254 0.86799 1.68570 1.36789 1.01187 1.16675 1.23485 0.89312 0.93941 0.89554 0.91862 0.77434 0.89724 0.93916 0.83777 0.93072 0.89810 0.91644 0.88550 0.91706 0.91401 0.90605 0.91422 0.90493 0.89867 0.80738 0.78146 0.80384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.07 13.05 55.50 0.72 -24.35 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.50 9.68 -14.94 -0.14 -8.65 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.74 5.29 -10.96 -0.06 -14.80 16 10 C 0.44 10.73 7.82 -10.99 -0.09 10.65 16 11 O -0.58 -16.03 15.78 5.55 0.09 -15.94 16 12 C 0.06 1.08 6.16 -4.97 -0.03 1.05 16 13 N -0.67 -11.18 5.49 -115.06 -0.63 -11.81 16 14 C 0.07 0.94 3.52 -3.83 -0.01 0.93 16 15 C 0.15 1.62 3.17 -67.60 -0.21 1.41 16 16 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.12 -1.27 5.15 -26.60 -0.14 -1.40 16 18 C -0.12 -0.93 5.88 -26.67 -0.16 -1.08 16 19 C -0.13 -0.81 6.09 -26.60 -0.16 -0.97 16 20 C 0.10 0.57 4.89 -3.71 -0.02 0.55 16 21 N -0.60 -5.30 2.97 -166.33 -0.49 -5.80 16 22 C 0.56 5.86 7.30 -12.33 -0.09 5.77 16 23 O -0.51 -7.03 12.34 5.32 0.07 -6.97 16 24 C -0.24 -1.99 5.20 -104.69 -0.54 -2.54 16 25 C 0.18 1.25 8.68 -16.78 -0.15 1.10 16 26 N -0.52 -3.96 10.42 -14.25 -0.15 -4.11 16 27 C 0.31 2.16 12.27 -92.03 -1.13 1.04 16 28 N -0.52 -4.44 10.42 -14.24 -0.15 -4.58 16 29 C 0.20 1.75 10.95 -16.78 -0.18 1.57 16 30 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.39 9.87 7.90 -40.82 -0.32 9.54 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.34 5.78 8.49 -39.29 -0.33 5.44 16 35 H 0.05 0.78 6.44 -51.93 -0.33 0.44 16 36 H 0.08 1.28 7.02 -51.93 -0.36 0.92 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.20 7.82 -51.93 -0.41 0.79 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.33 8.11 -51.93 -0.42 -0.09 16 44 H 0.08 0.42 4.65 -51.93 -0.24 0.18 16 45 H 0.18 0.83 6.48 -52.49 -0.34 0.49 16 46 H 0.20 0.72 8.06 -52.48 -0.42 0.30 16 47 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -33.89 382.51 -9.52 -43.40 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -6.50 Total: 12.93 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -3.15 Total: 9.89 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -0.76 Total: -65.45 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.15 Total: -22.91 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.89 -9.52 -43.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281860169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.042 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds