Wall clock time and date at job start Wed Apr 1 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31281 * 1 3 3 Si 1.86804 * 120.00106 * 2 1 4 4 H 1.48501 * 109.47331 * 240.00285 * 3 2 1 5 5 H 1.48501 * 109.46932 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47048 * 120.00214 * 3 2 1 7 7 C 1.39011 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99915 * 179.72083 * 7 2 1 9 9 N 1.37298 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.36435 * 126.05342 * 179.44550 * 9 7 2 11 11 C 1.35796 * 107.49661 * 179.89988 * 10 9 7 12 12 N 1.40292 * 126.09717 * 180.13975 * 11 10 9 13 13 C 1.34779 * 119.99784 * 180.23928 * 12 11 10 14 14 O 1.21406 * 119.99605 * 359.97438 * 13 12 11 15 15 C 1.49301 * 120.00061 * 179.97438 * 13 12 11 16 16 O 1.21363 * 120.00102 * 354.16207 * 15 13 12 17 17 N 1.34781 * 120.00024 * 174.16817 * 15 13 12 18 18 C 1.43524 * 117.80424 * 3.39162 * 17 15 13 19 19 C 1.56127 * 110.74431 * 285.15899 * 18 17 15 20 20 C 1.57167 * 99.19014 * 309.04098 * 19 18 17 21 21 N 1.48628 * 108.25784 * 326.49442 * 20 19 18 22 22 C 1.47987 * 109.57906 * 225.67292 * 21 20 19 23 23 C 1.54184 * 105.21920 * 215.00870 * 22 21 20 24 24 C 1.54061 * 105.15111 * 24.37901 * 23 22 21 25 25 C 1.52333 * 99.80521 * 117.29141 * 21 20 19 26 26 H 1.09001 * 113.44984 * 27.40780 * 25 21 20 27 27 C 1.45121 * 117.80363 * 183.13876 * 17 15 13 28 28 C 1.40715 * 107.79699 * 0.35741 * 11 10 9 29 29 N 1.30879 * 108.37879 * 359.77825 * 28 11 10 30 30 H 0.96993 * 119.99951 * 359.97438 * 1 2 3 31 31 H 1.07998 * 126.25272 * 0.02996 * 10 9 7 32 32 H 0.97002 * 120.00414 * 0.23248 * 12 11 10 33 33 H 1.09004 * 109.21989 * 45.48561 * 18 17 15 34 34 H 1.08997 * 109.22619 * 164.86791 * 18 17 15 35 35 H 1.09004 * 111.45748 * 66.53888 * 19 18 17 36 36 H 1.09004 * 111.45440 * 191.47471 * 19 18 17 37 37 H 1.09004 * 109.70467 * 86.18310 * 20 19 18 38 38 H 1.09000 * 109.70758 * 206.75822 * 20 19 18 39 39 H 1.09001 * 110.29323 * 333.94322 * 22 21 20 40 40 H 1.08999 * 110.29366 * 96.07493 * 22 21 20 41 41 H 1.09001 * 110.30785 * 265.45761 * 23 22 21 42 42 H 1.09004 * 110.38760 * 143.33812 * 23 22 21 43 43 H 1.09000 * 110.19744 * 240.75784 * 24 23 22 44 44 H 1.08997 * 110.26340 * 118.92614 * 24 23 22 45 45 H 1.09004 * 110.32356 * 232.12413 * 27 17 15 46 46 H 1.09002 * 110.32002 * 354.36328 * 27 17 15 47 47 H 1.08004 * 125.81360 * 179.81047 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1006 1.6965 -1.2125 5 1 1.2818 2.7465 0.0006 6 1 3.1006 1.6964 1.2125 7 6 2.0079 -1.2039 -0.0005 8 1 3.0879 -1.2038 -0.0051 9 7 1.3214 -2.3929 -0.0005 10 6 1.8751 -3.6398 -0.0117 11 6 0.8572 -4.5386 -0.0051 12 7 0.9879 -5.9354 -0.0097 13 6 -0.1115 -6.7151 -0.0070 14 8 -1.2148 -6.2085 0.0001 15 6 0.0276 -8.2016 -0.0125 16 8 1.1246 -8.7081 -0.1264 17 7 -1.0653 -8.9811 0.1088 18 6 -2.3455 -8.3349 0.1657 19 6 -2.5674 -7.6689 1.5603 20 6 -2.2198 -8.8939 2.4816 21 7 -2.6522 -10.1354 1.7883 22 6 -3.3723 -11.0100 2.7405 23 6 -2.9980 -12.4487 2.3311 24 6 -1.6461 -12.3214 1.6034 25 6 -1.3029 -10.8220 1.6201 26 1 -0.5757 -10.5422 2.3824 27 6 -0.8688 -10.4177 0.1675 28 6 -0.3520 -3.8189 0.0022 29 7 -0.0713 -2.5406 0.0049 30 1 -0.4850 0.8400 0.0004 31 1 2.9302 -3.8699 -0.0217 32 1 1.8695 -6.3401 -0.0151 33 1 -2.3963 -7.5702 -0.6094 34 1 -3.1283 -9.0734 -0.0072 35 1 -1.8771 -6.8407 1.7210 36 1 -3.6020 -7.3516 1.6906 37 1 -1.1448 -8.9273 2.6587 38 1 -2.7460 -8.8003 3.4316 39 1 -3.0440 -10.8096 3.7604 40 1 -4.4483 -10.8598 2.6523 41 1 -3.7521 -12.8592 1.6596 42 1 -2.8945 -13.0798 3.2138 43 1 -1.7368 -12.6752 0.5764 44 1 -0.8790 -12.8890 2.1300 45 1 -1.4976 -10.9163 -0.5702 46 1 0.1800 -10.6635 0.0010 47 1 -1.3430 -4.2483 0.0057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319350270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:55 Heat of formation + Delta-G solvation = 82.788775 kcal Electronic energy + Delta-G solvation = -31337.935237 eV Core-core repulsion = 27139.138104 eV Total energy + Delta-G solvation = -4198.797133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24687 -39.87383 -39.09929 -37.85579 -36.17851 -34.17404 -33.38555 -33.13398 -30.73192 -30.30083 -29.44321 -28.05325 -26.13802 -25.35014 -24.88717 -23.26418 -21.84466 -21.01409 -20.87521 -20.76556 -19.53601 -19.11896 -17.64744 -17.23247 -16.62766 -16.23354 -16.04692 -15.49742 -15.40646 -15.12489 -14.83030 -14.57680 -14.30139 -14.05958 -13.98249 -13.80677 -13.36993 -13.16692 -13.00132 -12.91985 -12.59986 -12.05260 -11.81527 -11.72143 -11.68972 -11.49082 -11.43682 -11.27528 -11.14537 -11.09206 -10.95446 -10.80768 -10.72943 -10.57712 -10.50858 -9.97366 -9.18976 -9.13892 -8.88374 -8.74507 -8.49047 -8.11644 -6.74834 -6.59644 -4.26710 1.69976 2.69699 2.94799 3.03932 3.07468 3.33601 3.72073 3.73072 3.85441 3.94353 4.20644 4.35563 4.39252 4.57210 4.60042 4.82617 4.85326 4.98865 5.02058 5.03455 5.09301 5.19351 5.33102 5.33984 5.37465 5.51079 5.57821 5.59154 5.65676 5.70355 5.76341 5.81825 6.03367 6.20720 6.23728 6.36274 6.37930 6.41503 6.63872 6.71494 6.81090 6.89589 7.00522 7.17811 7.28167 7.77409 7.87833 8.15421 8.20593 8.52836 8.72252 9.32313 9.61388 10.36096 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029750 B = 0.002267 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.961277 B =12347.981006 C =12882.808250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.047 3.953 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.322 4.322 8 H 0.117 0.883 9 N -0.139 5.139 10 C -0.079 4.079 11 C -0.067 4.067 12 N -0.586 5.586 13 C 0.480 3.520 14 O -0.508 6.508 15 C 0.500 3.500 16 O -0.537 6.537 17 N -0.567 5.567 18 C 0.116 3.884 19 C -0.123 4.123 20 C 0.001 3.999 21 N -0.453 5.453 22 C 0.012 3.988 23 C -0.123 4.123 24 C -0.124 4.124 25 C 0.010 3.990 26 H 0.087 0.913 27 C 0.125 3.875 28 C -0.027 4.027 29 N -0.261 5.261 30 H 0.276 0.724 31 H 0.148 0.852 32 H 0.407 0.593 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 -20.929 3.972 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.454 4.454 8 H 0.134 0.866 9 N 0.094 4.906 10 C -0.230 4.230 11 C -0.173 4.173 12 N -0.228 5.228 13 C 0.261 3.739 14 O -0.386 6.386 15 C 0.284 3.716 16 O -0.414 6.414 17 N -0.298 5.298 18 C -0.007 4.007 19 C -0.161 4.161 20 C -0.128 4.128 21 N -0.176 5.176 22 C -0.116 4.116 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.099 4.099 26 H 0.105 0.895 27 C 0.002 3.998 28 C -0.202 4.202 29 N -0.092 5.092 30 H 0.087 0.913 31 H 0.165 0.835 32 H 0.242 0.758 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.118 0.882 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.349 -19.393 3.344 20.393 hybrid contribution 1.655 -0.587 0.932 1.988 sum -3.694 -19.979 4.275 20.763 Atomic orbital electron populations 1.70192 1.06143 1.28210 1.34888 1.25655 0.95725 1.00313 0.95407 0.85884 0.79161 0.79526 0.79535 1.19107 1.20107 1.19119 1.19862 0.91717 0.80510 1.53357 0.86553 1.44539 1.04099 1.03325 1.38589 1.21308 0.96983 0.85265 1.19482 1.17245 0.94574 0.80673 1.24773 1.42195 1.08607 1.04545 1.67491 1.19632 0.85184 0.87206 0.81842 1.90610 1.24700 1.74428 1.48843 1.20581 0.84946 0.88686 0.77427 1.90692 1.26032 1.75596 1.49083 1.46736 1.07298 1.06099 1.69672 1.21797 0.83381 0.96856 0.98636 1.23529 1.02538 0.95492 0.94574 1.24142 0.99544 0.92368 0.96703 1.70286 1.10377 1.03119 1.33838 1.23289 1.00356 0.92914 0.95090 1.22289 0.97209 0.96421 1.00235 1.22279 0.97124 0.95242 1.01590 1.25326 0.92471 0.93877 0.98263 0.89538 1.22376 1.02892 0.79610 0.94937 1.24147 0.97922 0.90713 1.07461 1.78257 0.90070 1.15056 1.25782 0.91329 0.83482 0.75808 0.89319 0.89228 0.88975 0.90463 0.92194 0.92730 0.93482 0.89918 0.91052 0.91478 0.90652 0.91387 0.89909 0.88239 0.80483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.09 11.81 55.50 0.66 -20.43 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.67 29.55 -169.99 -5.02 13.64 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.32 -8.40 10.25 -14.82 -0.15 -8.55 16 8 H 0.12 2.71 7.83 -52.48 -0.41 2.29 16 9 N -0.14 -3.74 3.73 -11.40 -0.04 -3.79 16 10 C -0.08 -1.85 11.50 -16.38 -0.19 -2.03 16 11 C -0.07 -1.52 6.90 -83.92 -0.58 -2.09 16 12 N -0.59 -10.93 5.45 -10.46 -0.06 -10.99 16 13 C 0.48 8.48 7.19 -11.65 -0.08 8.39 16 14 O -0.51 -9.51 7.99 5.45 0.04 -9.46 16 15 C 0.50 7.73 7.51 -11.65 -0.09 7.64 16 16 O -0.54 -8.94 15.62 5.49 0.09 -8.86 16 17 N -0.57 -7.23 1.94 -173.11 -0.34 -7.56 16 18 C 0.12 1.47 4.79 -3.94 -0.02 1.45 16 19 C -0.12 -1.56 6.48 -22.79 -0.15 -1.71 16 20 C 0.00 0.01 5.19 -0.60 0.00 0.01 16 21 N -0.45 -4.34 3.69 -213.26 -0.79 -5.13 16 22 C 0.01 0.10 6.38 -2.61 -0.02 0.08 16 23 C -0.12 -0.81 6.98 -25.56 -0.18 -0.98 16 24 C -0.12 -0.86 6.48 -25.75 -0.17 -1.02 16 25 C 0.01 0.09 3.06 -62.07 -0.19 -0.10 16 26 H 0.09 0.86 6.82 -51.93 -0.35 0.50 16 27 C 0.12 1.28 5.91 -2.67 -0.02 1.27 16 28 C -0.03 -0.68 10.84 -17.02 -0.18 -0.86 16 29 N -0.26 -7.38 10.39 30.81 0.32 -7.06 16 30 H 0.28 6.94 8.31 -40.82 -0.34 6.61 16 31 H 0.15 2.90 8.06 -52.49 -0.42 2.48 16 32 H 0.41 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.09 1.30 6.00 -51.93 -0.31 0.99 16 34 H 0.09 1.04 6.86 -51.93 -0.36 0.68 16 35 H 0.09 1.43 5.66 -51.93 -0.29 1.14 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.72 6.17 -51.93 -0.32 0.40 16 38 H 0.05 0.56 7.29 -51.93 -0.38 0.18 16 39 H 0.05 0.37 7.42 -51.93 -0.39 -0.01 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.49 7.32 -51.93 -0.38 0.11 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.75 7.63 -51.93 -0.40 0.36 16 46 H 0.10 1.09 6.74 -51.93 -0.35 0.74 16 47 H 0.18 4.29 5.92 -52.48 -0.31 3.98 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -30.66 363.46 -8.03 -38.69 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -6.26 Total: 12.90 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -2.11 Total: 2.57 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.25 Total: -54.96 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.13 Total: -18.32 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.66 -8.03 -38.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319350270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.482 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds