Wall clock time and date at job start Wed Apr 1 2020 05:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31281 * 1 3 3 Si 1.86804 * 120.00106 * 2 1 4 4 H 1.48501 * 109.47331 * 240.00285 * 3 2 1 5 5 H 1.48501 * 109.46932 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47048 * 120.00214 * 3 2 1 7 7 C 1.39011 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99915 * 179.72083 * 7 2 1 9 9 N 1.37298 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.36435 * 126.05342 * 179.44550 * 9 7 2 11 11 C 1.35796 * 107.49661 * 179.89988 * 10 9 7 12 12 N 1.40292 * 126.09717 * 180.13975 * 11 10 9 13 13 C 1.34779 * 119.99784 * 180.23928 * 12 11 10 14 14 O 1.21406 * 119.99605 * 359.97438 * 13 12 11 15 15 C 1.49301 * 120.00061 * 179.97438 * 13 12 11 16 16 O 1.21363 * 120.00102 * 354.16207 * 15 13 12 17 17 N 1.34781 * 120.00024 * 174.16817 * 15 13 12 18 18 C 1.43524 * 117.80424 * 3.39162 * 17 15 13 19 19 C 1.56127 * 110.74431 * 285.15899 * 18 17 15 20 20 C 1.57167 * 99.19014 * 309.04098 * 19 18 17 21 21 N 1.48628 * 108.25784 * 326.49442 * 20 19 18 22 22 C 1.47987 * 109.57906 * 225.67292 * 21 20 19 23 23 C 1.54184 * 105.21920 * 215.00870 * 22 21 20 24 24 C 1.54061 * 105.15111 * 24.37901 * 23 22 21 25 25 C 1.52333 * 99.80521 * 117.29141 * 21 20 19 26 26 H 1.09001 * 113.44984 * 27.40780 * 25 21 20 27 27 C 1.45121 * 117.80363 * 183.13876 * 17 15 13 28 28 C 1.40715 * 107.79699 * 0.35741 * 11 10 9 29 29 N 1.30879 * 108.37879 * 359.77825 * 28 11 10 30 30 H 0.96993 * 119.99951 * 359.97438 * 1 2 3 31 31 H 1.07998 * 126.25272 * 0.02996 * 10 9 7 32 32 H 0.97002 * 120.00414 * 0.23248 * 12 11 10 33 33 H 1.09004 * 109.21989 * 45.48561 * 18 17 15 34 34 H 1.08997 * 109.22619 * 164.86791 * 18 17 15 35 35 H 1.09004 * 111.45748 * 66.53888 * 19 18 17 36 36 H 1.09004 * 111.45440 * 191.47471 * 19 18 17 37 37 H 1.09004 * 109.70467 * 86.18310 * 20 19 18 38 38 H 1.09000 * 109.70758 * 206.75822 * 20 19 18 39 39 H 1.09001 * 110.29323 * 333.94322 * 22 21 20 40 40 H 1.08999 * 110.29366 * 96.07493 * 22 21 20 41 41 H 1.09001 * 110.30785 * 265.45761 * 23 22 21 42 42 H 1.09004 * 110.38760 * 143.33812 * 23 22 21 43 43 H 1.09000 * 110.19744 * 240.75784 * 24 23 22 44 44 H 1.08997 * 110.26340 * 118.92614 * 24 23 22 45 45 H 1.09004 * 110.32356 * 232.12413 * 27 17 15 46 46 H 1.09002 * 110.32002 * 354.36328 * 27 17 15 47 47 H 1.08004 * 125.81360 * 179.81047 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1006 1.6965 -1.2125 5 1 1.2818 2.7465 0.0006 6 1 3.1006 1.6964 1.2125 7 6 2.0079 -1.2039 -0.0005 8 1 3.0879 -1.2038 -0.0051 9 7 1.3214 -2.3929 -0.0005 10 6 1.8751 -3.6398 -0.0117 11 6 0.8572 -4.5386 -0.0051 12 7 0.9879 -5.9354 -0.0097 13 6 -0.1115 -6.7151 -0.0070 14 8 -1.2148 -6.2085 0.0001 15 6 0.0276 -8.2016 -0.0125 16 8 1.1246 -8.7081 -0.1264 17 7 -1.0653 -8.9811 0.1088 18 6 -2.3455 -8.3349 0.1657 19 6 -2.5674 -7.6689 1.5603 20 6 -2.2198 -8.8939 2.4816 21 7 -2.6522 -10.1354 1.7883 22 6 -3.3723 -11.0100 2.7405 23 6 -2.9980 -12.4487 2.3311 24 6 -1.6461 -12.3214 1.6034 25 6 -1.3029 -10.8220 1.6201 26 1 -0.5757 -10.5422 2.3824 27 6 -0.8688 -10.4177 0.1675 28 6 -0.3520 -3.8189 0.0022 29 7 -0.0713 -2.5406 0.0049 30 1 -0.4850 0.8400 0.0004 31 1 2.9302 -3.8699 -0.0217 32 1 1.8695 -6.3401 -0.0151 33 1 -2.3963 -7.5702 -0.6094 34 1 -3.1283 -9.0734 -0.0072 35 1 -1.8771 -6.8407 1.7210 36 1 -3.6020 -7.3516 1.6906 37 1 -1.1448 -8.9273 2.6587 38 1 -2.7460 -8.8003 3.4316 39 1 -3.0440 -10.8096 3.7604 40 1 -4.4483 -10.8598 2.6523 41 1 -3.7521 -12.8592 1.6596 42 1 -2.8945 -13.0798 3.2138 43 1 -1.7368 -12.6752 0.5764 44 1 -0.8790 -12.8890 2.1300 45 1 -1.4976 -10.9163 -0.5702 46 1 0.1800 -10.6635 0.0010 47 1 -1.3430 -4.2483 0.0057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319350270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:54 Heat of formation + Delta-G solvation = 62.822387 kcal Electronic energy + Delta-G solvation = -31338.801044 eV Core-core repulsion = 27139.138104 eV Total energy + Delta-G solvation = -4199.662940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.46424 -41.52232 -40.29803 -39.24063 -37.28373 -35.81011 -34.90921 -34.26257 -32.27234 -31.50208 -30.30874 -29.82278 -27.49832 -26.49071 -26.29697 -24.44770 -23.07465 -22.62725 -21.67639 -21.55645 -21.31262 -20.49798 -19.33255 -18.57109 -17.86580 -17.43724 -17.23892 -16.94148 -16.72726 -16.51035 -16.06030 -15.63215 -15.50894 -15.39131 -15.14702 -14.93921 -14.81793 -14.79485 -14.33357 -13.76284 -13.58362 -13.49426 -13.34146 -13.02721 -12.89385 -12.75315 -12.68440 -12.44900 -12.27148 -12.13323 -12.12863 -12.04414 -11.86403 -11.60907 -11.47079 -11.21305 -10.94868 -10.83999 -10.29666 -10.11388 -9.78863 -9.58808 -8.56708 -8.47533 -6.24582 0.33053 1.31422 1.37239 1.44608 1.57023 1.73711 2.06589 2.12991 2.53735 2.57296 2.89063 3.08683 3.11079 3.46654 3.53250 3.69129 3.87756 4.08395 4.11257 4.20036 4.31736 4.35097 4.41640 4.47321 4.55311 4.64067 4.66021 4.68812 4.72113 4.86260 4.96755 4.98164 4.99407 5.01899 5.08261 5.12512 5.17036 5.22078 5.27673 5.30148 5.48454 5.57577 5.67425 5.88452 5.93043 6.06086 6.26911 6.48082 6.70108 6.82624 7.14263 7.43177 7.66016 8.51424 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029750 B = 0.002267 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.961277 B =12347.981006 C =12882.808250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C -0.005 4.005 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.354 4.354 8 H 0.139 0.861 9 N -0.164 5.164 10 C -0.079 4.079 11 C -0.051 4.051 12 N -0.588 5.588 13 C 0.480 3.520 14 O -0.517 6.517 15 C 0.505 3.495 16 O -0.548 6.548 17 N -0.553 5.553 18 C 0.122 3.878 19 C -0.123 4.123 20 C 0.010 3.990 21 N -0.458 5.458 22 C 0.010 3.990 23 C -0.118 4.118 24 C -0.119 4.119 25 C 0.013 3.987 26 H 0.078 0.922 27 C 0.121 3.879 28 C -0.045 4.045 29 N -0.308 5.308 30 H 0.277 0.723 31 H 0.184 0.816 32 H 0.419 0.581 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 -23.112 4.234 23.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.217 4.217 3 Si 0.837 3.163 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.485 4.485 8 H 0.157 0.843 9 N 0.068 4.932 10 C -0.230 4.230 11 C -0.157 4.157 12 N -0.233 5.233 13 C 0.262 3.738 14 O -0.394 6.394 15 C 0.287 3.713 16 O -0.427 6.427 17 N -0.283 5.283 18 C -0.001 4.001 19 C -0.161 4.161 20 C -0.119 4.119 21 N -0.181 5.181 22 C -0.118 4.118 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.096 4.096 26 H 0.096 0.904 27 C 0.000 4.000 28 C -0.221 4.221 29 N -0.139 5.139 30 H 0.087 0.913 31 H 0.201 0.799 32 H 0.256 0.744 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.121 0.879 46 H 0.114 0.886 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.611 -21.644 3.610 22.422 hybrid contribution 1.326 -0.138 0.865 1.589 sum -3.285 -21.783 4.475 22.479 Atomic orbital electron populations 1.70365 1.08311 1.29261 1.36906 1.26859 0.96503 1.04224 0.94093 0.84665 0.77591 0.73818 0.80227 1.17824 1.20175 1.17810 1.20577 0.92968 0.80884 1.54091 0.84317 1.44803 1.03774 1.04640 1.40022 1.21981 0.98792 0.84344 1.17849 1.17267 0.93420 0.82492 1.22568 1.42137 1.09716 1.02936 1.68487 1.20207 0.84663 0.88460 0.80451 1.90625 1.25233 1.75145 1.48384 1.20092 0.85586 0.87417 0.78165 1.90693 1.26455 1.75288 1.50237 1.46841 1.06453 1.07088 1.67924 1.21728 0.83670 0.96794 0.97862 1.23387 1.02050 0.95386 0.95314 1.24002 0.98898 0.92302 0.96663 1.70208 1.10782 1.02833 1.34319 1.23349 1.00321 0.93471 0.94699 1.22280 0.96998 0.95486 1.00854 1.22271 0.97654 0.93347 1.02478 1.25260 0.91946 0.95531 0.96884 0.90407 1.22652 1.03276 0.77599 0.96516 1.24265 0.98914 0.90619 1.08279 1.78151 0.91737 1.16619 1.27434 0.91276 0.79880 0.74373 0.91451 0.87408 0.92114 0.89848 0.93353 0.92012 0.93472 0.89536 0.90374 0.90263 0.89732 0.90322 0.87932 0.88595 0.80459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.76 11.81 21.67 0.26 -46.50 16 2 C 0.00 -0.24 5.50 84.96 0.47 0.23 16 3 Si 1.02 38.32 29.55 68.60 2.03 40.34 16 4 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 5 H -0.28 -10.29 7.11 99.48 0.71 -9.59 16 6 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 7 C -0.35 -18.67 10.25 84.02 0.86 -17.81 16 8 H 0.14 6.36 7.83 -2.91 -0.02 6.34 16 9 N -0.16 -9.06 3.73 -189.97 -0.71 -9.77 16 10 C -0.08 -3.69 11.50 83.41 0.96 -2.73 16 11 C -0.05 -2.35 6.90 37.82 0.26 -2.09 16 12 N -0.59 -21.89 5.45 -305.33 -1.66 -23.56 16 13 C 0.48 17.07 7.19 87.22 0.63 17.70 16 14 O -0.52 -19.86 7.99 -3.42 -0.03 -19.88 16 15 C 0.50 15.27 7.51 87.22 0.65 15.93 16 16 O -0.55 -17.66 15.62 -3.29 -0.05 -17.71 16 17 N -0.55 -13.47 1.94 -819.94 -1.59 -15.06 16 18 C 0.12 3.01 4.79 88.02 0.42 3.43 16 19 C -0.12 -3.12 6.48 33.15 0.21 -2.91 16 20 C 0.01 0.22 5.19 87.43 0.45 0.67 16 21 N -0.46 -7.81 3.69 -828.63 -3.06 -10.87 16 22 C 0.01 0.13 6.38 86.49 0.55 0.68 16 23 C -0.12 -1.15 6.98 31.35 0.22 -0.93 16 24 C -0.12 -1.26 6.48 31.23 0.20 -1.05 16 25 C 0.01 0.20 3.06 45.48 0.14 0.34 16 26 H 0.08 1.41 6.82 -2.39 -0.02 1.40 16 27 C 0.12 2.23 5.91 88.00 0.52 2.75 16 28 C -0.05 -2.38 10.84 85.44 0.93 -1.45 16 29 N -0.31 -18.16 10.39 -56.43 -0.59 -18.75 16 30 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.18 6.95 8.06 -2.91 -0.02 6.92 16 32 H 0.42 13.47 8.31 -92.71 -0.77 12.70 16 33 H 0.07 1.98 6.00 -2.39 -0.01 1.97 16 34 H 0.11 2.30 6.86 -2.39 -0.02 2.29 16 35 H 0.06 1.95 5.66 -2.38 -0.01 1.94 16 36 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.05 1.13 6.17 -2.39 -0.01 1.12 16 38 H 0.06 1.20 7.29 -2.39 -0.02 1.18 16 39 H 0.05 0.64 7.42 -2.39 -0.02 0.62 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.08 0.77 7.32 -2.39 -0.02 0.75 16 44 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.10 1.54 7.63 -2.39 -0.02 1.52 16 46 H 0.10 1.90 6.74 -2.39 -0.02 1.89 16 47 H 0.18 9.04 5.92 -2.91 -0.02 9.02 16 Total: -1.00 -69.02 363.46 2.34 -66.68 By element: Atomic # 1 Polarization: 42.07 SS G_CDS: 0.26 Total: 42.33 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 7.48 Total: 12.75 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -7.35 Total: -124.51 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.08 Total: -37.60 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.34 kcal Total: -69.02 2.34 -66.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319350270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.505 kcal (2) G-P(sol) polarization free energy of solvation -69.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds