Wall clock time and date at job start Wed Apr 1 2020 04:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42102 * 110.54159 * 2 1 4 4 O 1.42099 * 110.54021 * 223.24239 * 2 1 3 5 5 N 1.65599 * 104.44659 * 111.62240 * 2 1 3 6 6 C 1.46929 * 120.63325 * 89.99688 * 5 2 1 7 7 C 1.53188 * 108.77925 * 233.58708 * 6 5 2 8 8 C 1.53042 * 109.31178 * 305.36647 * 7 6 5 9 9 C 1.52997 * 109.46192 * 181.38755 * 8 7 6 10 10 N 1.46499 * 109.47555 * 174.99992 * 9 8 7 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 H 1.08995 * 109.47357 * 39.71838 * 13 11 10 15 15 N 1.46895 * 109.46992 * 159.72213 * 13 11 10 16 16 C 1.52995 * 109.46732 * 279.72068 * 13 11 10 17 17 C 1.53009 * 109.47136 * 174.99999 * 16 13 11 18 18 C 1.50698 * 109.47293 * 179.97438 * 17 16 13 19 19 H 1.08004 * 119.99938 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99700 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00235 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99716 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47113 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46975 * 120.00347 * 22 20 18 25 25 H 1.48498 * 109.47170 * 240.00275 * 22 20 18 26 26 C 1.53039 * 109.53829 * 61.36388 * 8 7 6 27 27 C 1.46932 * 120.62976 * 269.97717 * 5 2 1 28 28 H 1.09007 * 109.47224 * 308.38094 * 1 2 3 29 29 H 1.08996 * 109.46998 * 68.37752 * 1 2 3 30 30 H 1.09000 * 109.47265 * 188.37687 * 1 2 3 31 31 H 1.09005 * 109.58302 * 113.79432 * 6 5 2 32 32 H 1.09000 * 109.58174 * 353.37463 * 6 5 2 33 33 H 1.08993 * 109.49597 * 185.41390 * 7 6 5 34 34 H 1.09001 * 109.49596 * 65.31301 * 7 6 5 35 35 H 1.09004 * 109.45801 * 301.35739 * 8 7 6 36 36 H 1.08998 * 109.47382 * 54.99553 * 9 8 7 37 37 H 1.09002 * 109.47216 * 294.99990 * 9 8 7 38 38 H 0.97000 * 119.99484 * 359.97438 * 10 9 8 39 39 H 1.00901 * 111.00088 * 60.00223 * 15 13 11 40 40 H 1.00898 * 111.00134 * 183.95339 * 15 13 11 41 41 H 1.08995 * 109.47790 * 294.99945 * 16 13 11 42 42 H 1.09001 * 109.47648 * 55.00468 * 16 13 11 43 43 H 1.09003 * 109.46899 * 300.00304 * 17 16 13 44 44 H 1.09001 * 109.46469 * 59.99747 * 17 16 13 45 45 H 0.97000 * 120.00058 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.49661 * 58.59065 * 26 8 7 47 47 H 1.09000 * 109.49425 * 178.68492 * 26 8 7 48 48 H 1.09003 * 109.58389 * 246.20161 * 27 5 2 49 49 H 1.09000 * 109.58628 * 6.48122 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4908 6 6 2.4139 -2.0334 1.6989 7 6 1.5311 -2.4813 2.8680 8 6 1.8440 -1.6233 4.0961 9 6 0.9888 -2.0906 5.2756 10 7 1.3723 -1.3506 6.4804 11 6 0.7491 -1.5971 7.6497 12 8 -0.1297 -2.4312 7.7044 13 6 1.1394 -0.8314 8.8876 14 1 1.3256 0.2104 8.6269 15 7 0.0507 -0.9030 9.8712 16 6 2.4082 -1.4421 9.4859 17 6 2.8749 -0.5911 10.6689 18 6 4.1243 -1.1929 11.2586 19 1 4.5439 -2.0921 10.8321 20 6 4.7324 -0.5950 12.3420 21 7 4.2218 0.5002 12.8610 22 14 6.2808 -1.3413 13.0735 23 1 6.6484 -2.5628 12.3131 24 1 7.3898 -0.3569 12.9943 25 1 6.0353 -1.6972 14.4941 26 6 1.5316 -0.1570 3.7891 27 6 2.4144 0.3173 2.6305 28 1 -0.3634 0.6381 0.8056 29 1 -0.3633 0.3787 -0.9553 30 1 -0.3634 -1.0167 0.1497 31 1 3.4593 -2.2366 1.9315 32 1 2.1266 -2.5729 0.7964 33 1 1.7317 -3.5283 3.0950 34 1 0.4818 -2.3614 2.5983 35 1 2.8992 -1.7241 4.3502 36 1 1.1460 -3.1567 5.4386 37 1 -0.0632 -1.9079 5.0565 38 1 2.0754 -0.6837 6.4366 39 1 -0.1411 -1.8594 10.1294 40 1 0.2609 -0.3442 10.6846 41 1 2.1975 -2.4553 9.8280 42 1 3.1906 -1.4700 8.7275 43 1 3.0857 0.4221 10.3268 44 1 2.0925 -0.5632 11.4273 45 1 4.6494 0.9207 13.6234 46 1 0.4824 -0.0591 3.5108 47 1 1.7325 0.4503 4.6717 48 1 3.4598 0.3057 2.9390 49 1 2.1299 1.3292 2.3419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326536092.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:30 Heat of formation + Delta-G solvation = -127.745632 kcal Electronic energy + Delta-G solvation = -28775.681522 eV Core-core repulsion = 24670.906132 eV Total energy + Delta-G solvation = -4104.775390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.95319 -38.95670 -37.61119 -36.39684 -35.73922 -35.12425 -32.88393 -32.56999 -31.56369 -29.96772 -29.91410 -27.85893 -26.07669 -24.05517 -23.82991 -22.59770 -20.84033 -20.68994 -19.81259 -19.23360 -18.19314 -17.30904 -16.79956 -16.60452 -16.25729 -16.10198 -15.41026 -15.09155 -14.94245 -14.65346 -14.52239 -14.26495 -14.23238 -14.06887 -13.77506 -13.65076 -13.57664 -13.26565 -13.01106 -12.92800 -12.58149 -12.51650 -12.28869 -12.21787 -12.09385 -11.72202 -11.70419 -11.59808 -11.24279 -11.12249 -11.02702 -10.95203 -10.83426 -10.68676 -10.02613 -9.94220 -9.49393 -9.30994 -9.22278 -9.01315 -8.47067 -8.21513 -6.11351 -4.14464 -0.22312 2.12224 2.91425 3.23054 3.24238 3.32442 3.36102 3.40783 3.63895 4.03428 4.25656 4.30026 4.33144 4.37128 4.44144 4.61756 4.68120 4.88991 4.97349 5.01773 5.15263 5.16001 5.20994 5.25036 5.26465 5.31573 5.33017 5.43278 5.53872 5.57463 5.59878 5.71697 5.74380 5.78851 5.96205 6.10607 6.25163 6.47160 6.50640 6.84309 7.40156 7.48967 7.58139 7.67198 7.85683 7.87934 8.28233 8.44160 8.91778 9.50708 10.99550 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.001947 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.779555 B =14376.745347 C =15202.553956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.610 3.390 3 O -0.955 6.955 4 O -0.956 6.956 5 N -0.999 5.999 6 C 0.122 3.878 7 C -0.129 4.129 8 C -0.099 4.099 9 C 0.126 3.874 10 N -0.735 5.735 11 C 0.525 3.475 12 O -0.540 6.540 13 C 0.074 3.926 14 H 0.096 0.904 15 N -0.831 5.831 16 C -0.137 4.137 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.134 4.134 27 C 0.120 3.880 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.401 0.599 39 H 0.345 0.655 40 H 0.354 0.646 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.261 0.739 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 -1.429 -26.044 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.703 3.297 3 O -0.945 6.945 4 O -0.947 6.947 5 N -0.837 5.837 6 C -0.003 4.003 7 C -0.168 4.168 8 C -0.118 4.118 9 C 0.002 3.998 10 N -0.389 5.389 11 C 0.312 3.688 12 O -0.415 6.415 13 C -0.041 4.041 14 H 0.114 0.886 15 N -0.363 5.363 16 C -0.177 4.177 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.173 4.173 27 C -0.005 4.005 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.236 0.764 39 H 0.158 0.842 40 H 0.169 0.831 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.220 -1.307 -27.115 28.364 hybrid contribution 1.260 -0.569 1.467 2.016 sum -6.961 -1.876 -25.648 26.642 Atomic orbital electron populations 1.30600 1.28777 1.11624 1.11388 1.04922 0.77677 0.74030 0.73058 1.93618 1.77510 1.37747 1.85617 1.93610 1.77560 1.61697 1.61792 1.57754 1.84280 1.14545 1.27131 1.21445 1.00852 0.78906 0.99103 1.21925 1.00445 1.00022 0.94420 1.21360 1.00923 0.95185 0.94287 1.21305 0.98642 0.96367 0.83465 1.46010 1.41012 1.43150 1.08701 1.20894 0.80659 0.82839 0.84412 1.90634 1.30917 1.34381 1.85611 1.21473 0.92081 0.99777 0.90741 0.88639 1.58747 1.41967 1.17555 1.18054 1.22377 0.94506 1.00437 1.00364 1.19110 0.96222 0.94685 0.91308 1.21210 1.10017 1.10753 1.14157 0.92683 1.25018 0.97601 0.94939 0.96815 1.69955 1.40144 1.19122 1.23952 0.86530 0.83134 0.79235 0.79067 1.19770 1.20934 1.20944 1.22044 1.00418 0.96154 0.98651 1.21478 1.00948 0.92509 0.85541 0.85325 0.85550 0.85389 0.90523 0.88991 0.90039 0.91169 0.89792 0.91610 0.91732 0.76444 0.84153 0.83061 0.92718 0.92566 0.96334 0.96412 0.92918 0.91192 0.90098 0.90460 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.21 10.99 101.05 1.11 -1.10 16 2 S 2.61 17.22 6.05 -107.50 -0.65 16.57 16 3 O -0.95 -9.61 16.72 -57.54 -0.96 -10.58 16 4 O -0.96 -9.36 16.72 -57.54 -0.96 -10.32 16 5 N -1.00 -5.80 3.22 -113.51 -0.37 -6.16 16 6 C 0.12 0.63 6.31 -3.71 -0.02 0.61 16 7 C -0.13 -0.62 5.36 -26.61 -0.14 -0.76 16 8 C -0.10 -0.60 2.19 -90.58 -0.20 -0.80 16 9 C 0.13 1.16 5.06 -4.04 -0.02 1.14 16 10 N -0.73 -8.23 5.27 -60.29 -0.32 -8.55 16 11 C 0.53 8.13 7.08 -10.98 -0.08 8.05 16 12 O -0.54 -10.12 16.25 5.55 0.09 -10.03 16 13 C 0.07 1.21 3.21 -68.87 -0.22 0.99 16 14 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 15 N -0.83 -13.93 8.94 -5.66 -0.05 -13.98 16 16 C -0.14 -2.59 4.78 -26.73 -0.13 -2.72 16 17 C 0.02 0.56 4.74 -27.88 -0.13 0.43 16 18 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 19 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 22 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.13 -0.73 5.25 -26.61 -0.14 -0.87 16 27 C 0.12 0.68 6.32 -3.71 -0.02 0.66 16 28 H 0.13 0.31 8.14 -51.92 -0.42 -0.12 16 29 H 0.13 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.42 7.10 -51.93 -0.37 0.05 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.40 3.70 7.65 -40.82 -0.31 3.38 16 39 H 0.35 5.90 8.58 -39.29 -0.34 5.56 16 40 H 0.35 5.96 7.55 -39.29 -0.30 5.67 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 45 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.45 7.15 -51.93 -0.37 0.08 16 48 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.50 7.09 -51.93 -0.37 0.13 16 LS Contribution 403.35 15.07 6.08 6.08 Total: -1.00 -36.47 403.35 -10.12 -46.60 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -8.29 Total: 6.63 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -0.41 Total: -7.30 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.00 Total: -53.65 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.83 Total: -30.93 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 17.22 SS G_CDS: -0.65 Total: 16.57 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.47 -10.12 -46.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326536092.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.150 kcal (2) G-P(sol) polarization free energy of solvation -36.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds