Wall clock time and date at job start Wed Apr 1 2020 04:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42102 * 110.54159 * 2 1 4 4 O 1.42099 * 110.54021 * 223.24239 * 2 1 3 5 5 N 1.65599 * 104.44659 * 111.62240 * 2 1 3 6 6 C 1.46929 * 120.63325 * 89.99688 * 5 2 1 7 7 C 1.53188 * 108.77925 * 233.58708 * 6 5 2 8 8 C 1.53042 * 109.31178 * 305.36647 * 7 6 5 9 9 C 1.52997 * 109.46192 * 181.38755 * 8 7 6 10 10 N 1.46499 * 109.47555 * 174.99992 * 9 8 7 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 H 1.08995 * 109.47357 * 39.71838 * 13 11 10 15 15 N 1.46895 * 109.46992 * 159.72213 * 13 11 10 16 16 C 1.52995 * 109.46732 * 279.72068 * 13 11 10 17 17 C 1.53009 * 109.47136 * 174.99999 * 16 13 11 18 18 C 1.50698 * 109.47293 * 179.97438 * 17 16 13 19 19 H 1.08004 * 119.99938 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99700 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00235 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99716 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47113 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46975 * 120.00347 * 22 20 18 25 25 H 1.48498 * 109.47170 * 240.00275 * 22 20 18 26 26 C 1.53039 * 109.53829 * 61.36388 * 8 7 6 27 27 C 1.46932 * 120.62976 * 269.97717 * 5 2 1 28 28 H 1.09007 * 109.47224 * 308.38094 * 1 2 3 29 29 H 1.08996 * 109.46998 * 68.37752 * 1 2 3 30 30 H 1.09000 * 109.47265 * 188.37687 * 1 2 3 31 31 H 1.09005 * 109.58302 * 113.79432 * 6 5 2 32 32 H 1.09000 * 109.58174 * 353.37463 * 6 5 2 33 33 H 1.08993 * 109.49597 * 185.41390 * 7 6 5 34 34 H 1.09001 * 109.49596 * 65.31301 * 7 6 5 35 35 H 1.09004 * 109.45801 * 301.35739 * 8 7 6 36 36 H 1.08998 * 109.47382 * 54.99553 * 9 8 7 37 37 H 1.09002 * 109.47216 * 294.99990 * 9 8 7 38 38 H 0.97000 * 119.99484 * 359.97438 * 10 9 8 39 39 H 1.00901 * 111.00088 * 60.00223 * 15 13 11 40 40 H 1.00898 * 111.00134 * 183.95339 * 15 13 11 41 41 H 1.08995 * 109.47790 * 294.99945 * 16 13 11 42 42 H 1.09001 * 109.47648 * 55.00468 * 16 13 11 43 43 H 1.09003 * 109.46899 * 300.00304 * 17 16 13 44 44 H 1.09001 * 109.46469 * 59.99747 * 17 16 13 45 45 H 0.97000 * 120.00058 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.49661 * 58.59065 * 26 8 7 47 47 H 1.09000 * 109.49425 * 178.68492 * 26 8 7 48 48 H 1.09003 * 109.58389 * 246.20161 * 27 5 2 49 49 H 1.09000 * 109.58628 * 6.48122 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4908 6 6 2.4139 -2.0334 1.6989 7 6 1.5311 -2.4813 2.8680 8 6 1.8440 -1.6233 4.0961 9 6 0.9888 -2.0906 5.2756 10 7 1.3723 -1.3506 6.4804 11 6 0.7491 -1.5971 7.6497 12 8 -0.1297 -2.4312 7.7044 13 6 1.1394 -0.8314 8.8876 14 1 1.3256 0.2104 8.6269 15 7 0.0507 -0.9030 9.8712 16 6 2.4082 -1.4421 9.4859 17 6 2.8749 -0.5911 10.6689 18 6 4.1243 -1.1929 11.2586 19 1 4.5439 -2.0921 10.8321 20 6 4.7324 -0.5950 12.3420 21 7 4.2218 0.5002 12.8610 22 14 6.2808 -1.3413 13.0735 23 1 6.6484 -2.5628 12.3131 24 1 7.3898 -0.3569 12.9943 25 1 6.0353 -1.6972 14.4941 26 6 1.5316 -0.1570 3.7891 27 6 2.4144 0.3173 2.6305 28 1 -0.3634 0.6381 0.8056 29 1 -0.3633 0.3787 -0.9553 30 1 -0.3634 -1.0167 0.1497 31 1 3.4593 -2.2366 1.9315 32 1 2.1266 -2.5729 0.7964 33 1 1.7317 -3.5283 3.0950 34 1 0.4818 -2.3614 2.5983 35 1 2.8992 -1.7241 4.3502 36 1 1.1460 -3.1567 5.4386 37 1 -0.0632 -1.9079 5.0565 38 1 2.0754 -0.6837 6.4366 39 1 -0.1411 -1.8594 10.1294 40 1 0.2609 -0.3442 10.6846 41 1 2.1975 -2.4553 9.8280 42 1 3.1906 -1.4700 8.7275 43 1 3.0857 0.4221 10.3268 44 1 2.0925 -0.5632 11.4273 45 1 4.6494 0.9207 13.6234 46 1 0.4824 -0.0591 3.5108 47 1 1.7325 0.4503 4.6717 48 1 3.4598 0.3057 2.9390 49 1 2.1299 1.3292 2.3419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326536092.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:29 Heat of formation + Delta-G solvation = -157.319344 kcal Electronic energy + Delta-G solvation = -28776.963934 eV Core-core repulsion = 24670.906132 eV Total energy + Delta-G solvation = -4106.057802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.99101 -39.63859 -38.23311 -37.12557 -37.00944 -36.12503 -34.82080 -33.30567 -31.99420 -31.66249 -30.26781 -28.89061 -27.43428 -25.48545 -24.31069 -23.42855 -22.26983 -21.40101 -20.93414 -19.77254 -18.93157 -18.59605 -18.01617 -17.31421 -17.20444 -17.04190 -16.56601 -16.25723 -15.94733 -15.55673 -15.50611 -15.36695 -15.10871 -14.70741 -14.60340 -14.58657 -14.24358 -13.99409 -13.94566 -13.90698 -13.60487 -13.45745 -13.28234 -13.16522 -12.94420 -12.85136 -12.74793 -12.65583 -12.48975 -12.12566 -12.10653 -11.79400 -11.74361 -11.71223 -11.47487 -11.30552 -11.27092 -10.69207 -10.55874 -10.02752 -9.92358 -9.61453 -8.21098 -6.31034 -0.69109 1.38835 1.40760 1.52094 1.66263 1.67426 2.21735 2.40431 2.95924 3.12782 3.16869 3.61709 3.73125 3.78685 3.84423 3.89275 4.03017 4.13558 4.16310 4.18791 4.28918 4.29308 4.47592 4.52984 4.63776 4.69482 4.71562 4.82908 4.87201 4.89844 4.93293 4.96335 5.03963 5.10761 5.11972 5.24329 5.33975 5.44885 5.48246 5.57081 5.67560 5.68556 5.82070 6.10270 6.22352 6.49196 6.59335 6.85016 7.29760 7.38146 8.89747 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.001947 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.779555 B =14376.745347 C =15202.553956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.614 3.386 3 O -0.997 6.997 4 O -0.995 6.995 5 N -1.000 6.000 6 C 0.120 3.880 7 C -0.124 4.124 8 C -0.091 4.091 9 C 0.127 3.873 10 N -0.717 5.717 11 C 0.526 3.474 12 O -0.575 6.575 13 C 0.080 3.920 14 H 0.110 0.890 15 N -0.831 5.831 16 C -0.120 4.120 17 C 0.029 3.971 18 C -0.542 4.542 19 H 0.054 0.946 20 C 0.004 3.996 21 N -0.927 5.927 22 Si 0.958 3.042 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.281 1.281 26 C -0.131 4.131 27 C 0.119 3.881 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.147 0.853 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.412 0.588 39 H 0.343 0.657 40 H 0.352 0.648 41 H 0.042 0.958 42 H 0.067 0.933 43 H 0.003 0.997 44 H 0.001 0.999 45 H 0.263 0.737 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.039 -1.901 -27.090 28.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.711 3.289 3 O -0.987 6.987 4 O -0.985 6.985 5 N -0.838 5.838 6 C -0.005 4.005 7 C -0.164 4.164 8 C -0.110 4.110 9 C 0.003 3.997 10 N -0.370 5.370 11 C 0.313 3.687 12 O -0.454 6.454 13 C -0.036 4.036 14 H 0.128 0.872 15 N -0.362 5.362 16 C -0.160 4.160 17 C -0.008 4.008 18 C -0.580 4.580 19 H 0.073 0.927 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.783 3.217 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.207 1.207 26 C -0.170 4.170 27 C -0.006 4.006 28 H 0.163 0.837 29 H 0.159 0.841 30 H 0.166 0.834 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.249 0.751 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.021 0.979 44 H 0.020 0.980 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.100 0.900 48 H 0.092 0.908 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.462 -1.769 -28.201 29.497 hybrid contribution 1.302 -0.409 1.766 2.231 sum -7.161 -2.178 -26.436 27.475 Atomic orbital electron populations 1.30407 1.23893 1.13503 1.12992 1.04543 0.79246 0.72514 0.72567 1.93561 1.79522 1.39529 1.86120 1.93556 1.79499 1.62344 1.63147 1.57608 1.84832 1.14779 1.26601 1.21513 1.00883 0.78553 0.99554 1.21908 1.01066 1.00001 0.93388 1.21303 1.00244 0.95853 0.93552 1.21436 0.99193 0.95688 0.83339 1.45915 1.40142 1.42780 1.08180 1.20657 0.80647 0.82294 0.85152 1.90623 1.32687 1.35824 1.86233 1.21429 0.90528 1.00503 0.91113 0.87236 1.58770 1.42023 1.17332 1.18088 1.22125 0.96167 0.98841 0.98895 1.18979 0.94816 0.94476 0.92528 1.21650 1.11146 1.10788 1.14437 0.92734 1.25860 1.00785 0.95381 0.97384 1.70063 1.41669 1.20394 1.24539 0.85504 0.79354 0.78649 0.78167 1.18989 1.20318 1.20662 1.22034 1.00912 0.95526 0.98525 1.21498 1.00896 0.92680 0.85516 0.83697 0.84113 0.83428 0.90856 0.88360 0.89448 0.89959 0.89783 0.92487 0.91882 0.75079 0.84422 0.83362 0.93905 0.91437 0.97872 0.98032 0.92768 0.90256 0.90041 0.90810 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.33 10.99 113.37 1.25 -1.08 16 2 S 2.61 32.06 6.05 -56.49 -0.34 31.72 16 3 O -1.00 -19.97 16.72 -127.65 -2.13 -22.10 16 4 O -0.99 -19.17 16.72 -127.65 -2.13 -21.31 16 5 N -1.00 -10.24 3.22 -513.05 -1.65 -11.90 16 6 C 0.12 1.05 6.31 86.36 0.55 1.60 16 7 C -0.12 -0.91 5.36 30.67 0.16 -0.74 16 8 C -0.09 -0.91 2.19 -10.77 -0.02 -0.93 16 9 C 0.13 2.08 5.06 86.38 0.44 2.52 16 10 N -0.72 -14.76 5.27 -463.06 -2.44 -17.20 16 11 C 0.53 15.64 7.08 87.66 0.62 16.26 16 12 O -0.57 -21.09 16.25 -3.04 -0.05 -21.14 16 13 C 0.08 2.51 3.21 44.17 0.14 2.65 16 14 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 15 N -0.83 -27.65 8.94 -171.82 -1.54 -29.18 16 16 C -0.12 -4.49 4.78 30.60 0.15 -4.34 16 17 C 0.03 1.39 4.74 29.85 0.14 1.53 16 18 C -0.54 -29.22 9.11 25.60 0.23 -28.99 16 19 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 20 C 0.00 0.24 5.46 84.65 0.46 0.70 16 21 N -0.93 -53.69 13.29 21.45 0.28 -53.40 16 22 Si 0.96 42.88 29.54 68.60 2.03 44.91 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 C -0.13 -1.15 5.25 30.67 0.16 -0.98 16 27 C 0.12 1.18 6.32 86.36 0.55 1.73 16 28 H 0.14 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.10 0.76 7.10 -2.39 -0.02 0.74 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.41 6.70 7.65 -92.71 -0.71 5.99 16 39 H 0.34 11.74 8.58 -89.69 -0.77 10.97 16 40 H 0.35 11.93 7.55 -89.70 -0.68 11.25 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.00 0.07 6.87 -2.39 -0.02 0.05 16 45 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.08 0.72 7.15 -2.39 -0.02 0.70 16 48 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.09 0.91 7.09 -2.39 -0.02 0.89 16 Total: -1.00 -78.52 403.35 -4.34 -82.86 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -1.19 Total: 26.83 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.82 Total: -10.09 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -5.34 Total: -111.68 kcal Atomic # 8 Polarization: -60.23 SS G_CDS: -4.32 Total: -64.55 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 32.06 SS G_CDS: -0.34 Total: 31.72 kcal Total: -78.52 -4.34 -82.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326536092.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.457 kcal (2) G-P(sol) polarization free energy of solvation -78.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds