Wall clock time and date at job start Wed Apr 1 2020 04:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86806 * 119.99924 * 2 1 4 4 H 1.48499 * 109.47441 * 270.27765 * 3 2 1 5 5 H 1.48500 * 109.46960 * 30.27862 * 3 2 1 6 6 H 1.48502 * 109.46850 * 150.27805 * 3 2 1 7 7 C 1.38949 * 120.00346 * 180.28286 * 2 1 3 8 8 H 1.07993 * 120.00354 * 179.72255 * 7 2 1 9 9 N 1.37101 * 119.99323 * 359.71948 * 7 2 1 10 10 C 1.34781 * 119.99741 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99888 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00102 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47060 * 179.97438 * 12 10 9 14 14 C 1.46899 * 111.00086 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47349 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.58228 * 46.24617 * 15 14 13 17 17 C 1.53191 * 109.58462 * 166.53049 * 15 14 13 18 18 C 1.53046 * 109.30819 * 174.42291 * 17 15 14 19 19 C 1.53038 * 109.53997 * 298.63404 * 18 17 15 20 20 C 1.53195 * 109.31072 * 61.36585 * 19 18 17 21 21 N 1.46921 * 108.77727 * 305.36818 * 20 19 18 22 22 C 1.34782 * 120.62724 * 233.63212 * 21 20 19 23 23 O 1.21555 * 119.99994 * 186.00580 * 22 21 20 24 24 C 1.47829 * 120.00059 * 6.00203 * 22 21 20 25 25 C 1.39947 * 120.93944 * 32.58679 * 24 22 21 26 26 N 1.32154 * 118.91992 * 179.69848 * 25 24 22 27 27 C 1.31869 * 120.96886 * 0.61023 * 26 25 24 28 28 N 1.31868 * 122.09228 * 359.65780 * 27 26 25 29 29 C 1.32143 * 120.97202 * 0.02562 * 28 27 26 30 30 H 0.97004 * 119.99823 * 359.72110 * 1 2 3 31 31 H 0.96996 * 120.00568 * 0.02562 * 9 7 2 32 32 H 1.09008 * 109.46494 * 299.99498 * 12 10 9 33 33 H 1.08993 * 109.47439 * 59.99460 * 12 10 9 34 34 H 1.00897 * 110.99890 * 56.04260 * 13 12 10 35 35 H 1.09006 * 109.46907 * 300.00381 * 14 13 12 36 36 H 1.09003 * 109.47053 * 59.99619 * 14 13 12 37 37 H 1.08999 * 109.49888 * 294.37091 * 17 15 14 38 38 H 1.09005 * 109.49902 * 54.44477 * 17 15 14 39 39 H 1.08995 * 109.45894 * 58.66049 * 18 17 15 40 40 H 1.08997 * 109.45664 * 178.61628 * 18 17 15 41 41 H 1.08996 * 109.49634 * 181.31701 * 19 18 17 42 42 H 1.09003 * 109.50020 * 301.38426 * 19 18 17 43 43 H 1.09000 * 109.58492 * 65.15161 * 20 19 18 44 44 H 1.08998 * 109.58414 * 185.42826 * 20 19 18 45 45 H 1.07997 * 120.54115 * 359.97381 * 25 24 22 46 46 H 1.07998 * 118.95040 * 179.68345 * 27 26 25 47 47 H 1.07996 * 120.53918 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4898 2.0499 -1.4000 5 1 1.4485 2.6510 0.7059 6 1 3.5486 1.4385 0.6942 7 6 2.0089 -1.2033 -0.0059 8 1 3.0888 -1.2033 -0.0105 9 7 1.3234 -2.3906 -0.0060 10 6 1.9973 -3.5578 -0.0112 11 8 3.2102 -3.5578 -0.0164 12 6 1.2438 -4.8629 -0.0119 13 7 2.1984 -5.9795 -0.0186 14 6 1.4982 -7.2708 -0.0188 15 6 2.5230 -8.4067 -0.0265 16 1 3.2984 -8.2042 0.7123 17 6 1.8264 -9.7291 0.3094 18 6 2.8261 -10.8789 0.1641 19 6 3.3207 -10.9473 -1.2825 20 6 4.0342 -9.6387 -1.6364 21 7 3.1271 -8.5161 -1.3613 22 6 2.8539 -7.6043 -2.3155 23 8 2.1907 -6.6220 -2.0455 24 6 3.3610 -7.7987 -3.6904 25 6 3.5055 -9.0821 -4.2293 26 7 3.9568 -9.2094 -5.4649 27 6 4.2796 -8.1508 -6.1818 28 7 4.1642 -6.9243 -5.7113 29 6 3.7155 -6.7046 -4.4880 30 1 -0.4850 0.8401 0.0041 31 1 0.3534 -2.3906 -0.0023 32 1 0.6203 -4.9228 0.8803 33 1 0.6140 -4.9185 -0.8997 34 1 2.8363 -5.9145 0.7605 35 1 0.8769 -7.3474 0.8737 36 1 0.8695 -7.3431 -0.9063 37 1 1.4570 -9.6956 1.3344 38 1 0.9912 -9.8841 -0.3736 39 1 3.6725 -10.7104 0.8298 40 1 2.3395 -11.8183 0.4264 41 1 4.0147 -11.7808 -1.3906 42 1 2.4718 -11.0916 -1.9508 43 1 4.9345 -9.5379 -1.0303 44 1 4.3034 -9.6434 -2.6926 45 1 3.2482 -9.9542 -3.6465 46 1 4.6500 -8.2928 -7.1863 47 1 3.6241 -5.6972 -4.1096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326699164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:52 Heat of formation + Delta-G solvation = 10.833483 kcal Electronic energy + Delta-G solvation = -31141.430904 eV Core-core repulsion = 26939.513556 eV Total energy + Delta-G solvation = -4201.917348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.47627 -41.07926 -40.04052 -38.26256 -36.75757 -35.84221 -35.02185 -34.10520 -33.32076 -33.07118 -32.13273 -29.01630 -27.33666 -26.32221 -25.89216 -25.34446 -24.43241 -22.98671 -21.82053 -21.14425 -20.38418 -19.85665 -18.96701 -18.65556 -18.07114 -17.72501 -17.13328 -16.81655 -16.46418 -16.00693 -15.94495 -15.73777 -15.58927 -15.38130 -15.24743 -14.95784 -14.70010 -14.61670 -14.34406 -14.18801 -13.80936 -13.69107 -13.52437 -13.14143 -13.05746 -12.90731 -12.75359 -12.50443 -12.42697 -12.15988 -12.12642 -11.98949 -11.71940 -11.51037 -11.50734 -11.41364 -10.71163 -10.40723 -10.32633 -10.12170 -10.01200 -9.48314 -8.85451 -8.46586 -5.95552 -0.54531 -0.12341 1.36900 1.39318 1.52905 1.82795 2.00162 2.07494 2.28841 2.69667 2.98901 3.03938 3.10012 3.20558 3.34202 3.43002 3.60927 3.77654 3.86346 3.96542 4.04377 4.15769 4.28870 4.30229 4.34464 4.36950 4.47954 4.56154 4.61474 4.63947 4.67144 4.73029 4.89062 5.01077 5.05604 5.11567 5.19084 5.23355 5.27204 5.39649 5.50526 5.68717 5.74010 5.93306 6.21915 6.47225 6.61229 6.61748 6.89524 7.12716 7.35510 7.57046 8.13045 8.71307 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011802 B = 0.002898 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.847389 B = 9659.510596 C =11535.298120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.077 0.923 9 N -0.577 5.577 10 C 0.444 3.556 11 O -0.621 6.621 12 C 0.081 3.919 13 N -0.643 5.643 14 C 0.074 3.926 15 C 0.155 3.845 16 H 0.070 0.930 17 C -0.123 4.123 18 C -0.115 4.115 19 C -0.132 4.132 20 C 0.080 3.920 21 N -0.598 5.598 22 C 0.543 3.457 23 O -0.491 6.491 24 C -0.237 4.237 25 C 0.178 3.822 26 N -0.526 5.526 27 C 0.305 3.695 28 N -0.539 5.539 29 C 0.188 3.812 30 H 0.277 0.723 31 H 0.394 0.606 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.323 0.677 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.211 0.789 46 H 0.234 0.766 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 -28.528 -4.147 29.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.095 0.905 9 N -0.214 5.214 10 C 0.231 3.769 11 O -0.508 6.508 12 C -0.052 4.052 13 N -0.275 5.275 14 C -0.055 4.055 15 C 0.052 3.948 16 H 0.088 0.912 17 C -0.161 4.161 18 C -0.153 4.153 19 C -0.170 4.170 20 C -0.042 4.042 21 N -0.333 5.333 22 C 0.328 3.672 23 O -0.364 6.364 24 C -0.245 4.245 25 C 0.012 3.988 26 N -0.239 5.239 27 C 0.019 3.981 28 N -0.253 5.253 29 C 0.022 3.978 30 H 0.087 0.913 31 H 0.228 0.772 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.141 0.859 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.115 0.885 45 H 0.227 0.773 46 H 0.250 0.750 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.422 -27.933 -5.637 28.837 hybrid contribution -0.745 1.558 1.693 2.419 sum 3.678 -26.375 -3.943 26.920 Atomic orbital electron populations 1.69687 1.06885 1.29242 1.50586 1.26068 0.96575 1.02448 0.96337 0.84915 0.77909 0.76782 0.78634 1.19743 1.19274 1.19667 1.19663 0.92623 0.84102 1.49873 0.90482 1.41945 1.09190 1.04781 1.65498 1.20892 0.88241 0.86106 0.81625 1.90457 1.15849 1.87998 1.56461 1.21293 0.94002 0.88579 1.01330 1.60311 1.18310 1.00245 1.48646 1.22115 0.95697 0.87534 1.00125 1.21281 0.94848 0.95300 0.83340 0.91201 1.21926 0.98693 0.92666 1.02842 1.21492 0.98864 0.98315 0.96601 1.21967 1.01354 0.96190 0.97506 1.22516 0.92786 0.85822 1.03053 1.47785 1.47297 1.26701 1.11537 1.18043 0.82128 0.83001 0.84033 1.91066 1.38100 1.27637 1.79578 1.21940 1.07118 0.97236 0.98166 1.24214 0.87839 0.96152 0.90629 1.68615 1.13547 1.35088 1.06656 1.25915 0.88977 0.82296 1.00903 1.68570 1.15853 1.26782 1.14067 1.23362 0.86493 0.99730 0.88204 0.91323 0.77227 0.92798 0.89602 0.85874 0.94603 0.90729 0.89572 0.91311 0.91442 0.89799 0.88135 0.90812 0.90847 0.88484 0.77336 0.75047 0.82513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.19 13.05 21.66 0.28 -51.90 16 2 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 3 Si 0.99 44.86 29.55 68.60 2.03 46.89 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.33 -20.02 9.68 84.04 0.81 -19.20 16 8 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 9 N -0.58 -31.95 5.29 -306.98 -1.62 -33.58 16 10 C 0.44 23.14 7.82 87.66 0.69 23.83 16 11 O -0.62 -36.97 15.78 -3.07 -0.05 -37.02 16 12 C 0.08 3.21 5.79 85.56 0.50 3.70 16 13 N -0.64 -22.83 3.62 -517.93 -1.87 -24.70 16 14 C 0.07 1.91 4.33 86.30 0.37 2.29 16 15 C 0.16 3.01 3.08 44.97 0.14 3.15 16 16 H 0.07 1.42 8.05 -2.39 -0.02 1.40 16 17 C -0.12 -1.47 5.33 30.67 0.16 -1.31 16 18 C -0.12 -0.90 5.88 30.62 0.18 -0.72 16 19 C -0.13 -0.90 5.74 30.67 0.18 -0.72 16 20 C 0.08 0.98 5.56 86.36 0.48 1.46 16 21 N -0.60 -11.89 2.97 -798.45 -2.37 -14.26 16 22 C 0.54 14.70 7.18 86.78 0.62 15.32 16 23 O -0.49 -17.52 10.45 -3.89 -0.04 -17.56 16 24 C -0.24 -5.67 5.49 -19.91 -0.11 -5.78 16 25 C 0.18 3.09 8.74 85.06 0.74 3.84 16 26 N -0.53 -9.53 10.42 -198.99 -2.07 -11.60 16 27 C 0.31 5.69 12.27 180.84 2.22 7.91 16 28 N -0.54 -13.55 10.42 -198.98 -2.07 -15.62 16 29 C 0.19 5.22 10.91 85.06 0.93 6.15 16 30 H 0.28 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.39 20.93 7.90 -92.71 -0.73 20.19 16 32 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.09 3.44 7.92 -2.39 -0.02 3.42 16 34 H 0.32 11.87 8.36 -89.70 -0.75 11.12 16 35 H 0.04 0.82 8.08 -2.38 -0.02 0.80 16 36 H 0.07 2.17 6.30 -2.39 -0.02 2.15 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 40 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.07 0.47 7.70 -2.39 -0.02 0.45 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.10 1.12 3.45 -2.39 -0.01 1.12 16 45 H 0.21 2.27 5.06 -2.91 -0.01 2.25 16 46 H 0.23 2.43 8.06 -2.91 -0.02 2.40 16 47 H 0.16 5.02 8.03 -2.91 -0.02 4.99 16 Total: -1.00 -78.63 377.55 0.13 -78.50 By element: Atomic # 1 Polarization: 41.77 SS G_CDS: -0.45 Total: 41.32 kcal Atomic # 6 Polarization: 31.17 SS G_CDS: 8.38 Total: 39.54 kcal Atomic # 7 Polarization: -141.93 SS G_CDS: -9.73 Total: -151.66 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -0.09 Total: -54.58 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -78.63 0.13 -78.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326699164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.332 kcal (2) G-P(sol) polarization free energy of solvation -78.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds