Wall clock time and date at job start Wed Apr 1 2020 04:58:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31410 * 1
3 3 Si 1.86806 * 119.99924 * 2 1
4 4 H 1.48499 * 109.47441 * 270.27765 * 3 2 1
5 5 H 1.48500 * 109.46960 * 30.27862 * 3 2 1
6 6 H 1.48502 * 109.46850 * 150.27805 * 3 2 1
7 7 C 1.38949 * 120.00346 * 180.28286 * 2 1 3
8 8 H 1.07993 * 120.00354 * 179.72255 * 7 2 1
9 9 N 1.37101 * 119.99323 * 359.71948 * 7 2 1
10 10 C 1.34781 * 119.99741 * 180.02562 * 9 7 2
11 11 O 1.21292 * 119.99888 * 359.97438 * 10 9 7
12 12 C 1.50700 * 120.00102 * 180.02562 * 10 9 7
13 13 N 1.46902 * 109.47060 * 179.97438 * 12 10 9
14 14 C 1.46899 * 111.00086 * 179.97438 * 13 12 10
15 15 C 1.52995 * 109.47349 * 179.97438 * 14 13 12
16 16 H 1.09000 * 109.58228 * 46.24617 * 15 14 13
17 17 C 1.53191 * 109.58462 * 166.53049 * 15 14 13
18 18 C 1.53046 * 109.30819 * 174.42291 * 17 15 14
19 19 C 1.53038 * 109.53997 * 298.63404 * 18 17 15
20 20 C 1.53195 * 109.31072 * 61.36585 * 19 18 17
21 21 N 1.46921 * 108.77727 * 305.36818 * 20 19 18
22 22 C 1.34782 * 120.62724 * 233.63212 * 21 20 19
23 23 O 1.21555 * 119.99994 * 186.00580 * 22 21 20
24 24 C 1.47829 * 120.00059 * 6.00203 * 22 21 20
25 25 C 1.39947 * 120.93944 * 32.58679 * 24 22 21
26 26 N 1.32154 * 118.91992 * 179.69848 * 25 24 22
27 27 C 1.31869 * 120.96886 * 0.61023 * 26 25 24
28 28 N 1.31868 * 122.09228 * 359.65780 * 27 26 25
29 29 C 1.32143 * 120.97202 * 0.02562 * 28 27 26
30 30 H 0.97004 * 119.99823 * 359.72110 * 1 2 3
31 31 H 0.96996 * 120.00568 * 0.02562 * 9 7 2
32 32 H 1.09008 * 109.46494 * 299.99498 * 12 10 9
33 33 H 1.08993 * 109.47439 * 59.99460 * 12 10 9
34 34 H 1.00897 * 110.99890 * 56.04260 * 13 12 10
35 35 H 1.09006 * 109.46907 * 300.00381 * 14 13 12
36 36 H 1.09003 * 109.47053 * 59.99619 * 14 13 12
37 37 H 1.08999 * 109.49888 * 294.37091 * 17 15 14
38 38 H 1.09005 * 109.49902 * 54.44477 * 17 15 14
39 39 H 1.08995 * 109.45894 * 58.66049 * 18 17 15
40 40 H 1.08997 * 109.45664 * 178.61628 * 18 17 15
41 41 H 1.08996 * 109.49634 * 181.31701 * 19 18 17
42 42 H 1.09003 * 109.50020 * 301.38426 * 19 18 17
43 43 H 1.09000 * 109.58492 * 65.15161 * 20 19 18
44 44 H 1.08998 * 109.58414 * 185.42826 * 20 19 18
45 45 H 1.07997 * 120.54115 * 359.97381 * 25 24 22
46 46 H 1.07998 * 118.95040 * 179.68345 * 27 26 25
47 47 H 1.07996 * 120.53918 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 2.4898 2.0499 -1.4000
5 1 1.4485 2.6510 0.7059
6 1 3.5486 1.4385 0.6942
7 6 2.0089 -1.2033 -0.0059
8 1 3.0888 -1.2033 -0.0105
9 7 1.3234 -2.3906 -0.0060
10 6 1.9973 -3.5578 -0.0112
11 8 3.2102 -3.5578 -0.0164
12 6 1.2438 -4.8629 -0.0119
13 7 2.1984 -5.9795 -0.0186
14 6 1.4982 -7.2708 -0.0188
15 6 2.5230 -8.4067 -0.0265
16 1 3.2984 -8.2042 0.7123
17 6 1.8264 -9.7291 0.3094
18 6 2.8261 -10.8789 0.1641
19 6 3.3207 -10.9473 -1.2825
20 6 4.0342 -9.6387 -1.6364
21 7 3.1271 -8.5161 -1.3613
22 6 2.8539 -7.6043 -2.3155
23 8 2.1907 -6.6220 -2.0455
24 6 3.3610 -7.7987 -3.6904
25 6 3.5055 -9.0821 -4.2293
26 7 3.9568 -9.2094 -5.4649
27 6 4.2796 -8.1508 -6.1818
28 7 4.1642 -6.9243 -5.7113
29 6 3.7155 -6.7046 -4.4880
30 1 -0.4850 0.8401 0.0041
31 1 0.3534 -2.3906 -0.0023
32 1 0.6203 -4.9228 0.8803
33 1 0.6140 -4.9185 -0.8997
34 1 2.8363 -5.9145 0.7605
35 1 0.8769 -7.3474 0.8737
36 1 0.8695 -7.3431 -0.9063
37 1 1.4570 -9.6956 1.3344
38 1 0.9912 -9.8841 -0.3736
39 1 3.6725 -10.7104 0.8298
40 1 2.3395 -11.8183 0.4264
41 1 4.0147 -11.7808 -1.3906
42 1 2.4718 -11.0916 -1.9508
43 1 4.9345 -9.5379 -1.0303
44 1 4.3034 -9.6434 -2.6926
45 1 3.2482 -9.9542 -3.6465
46 1 4.6500 -8.2928 -7.1863
47 1 3.6241 -5.6972 -4.1096
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001326699164.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:58:52
Heat of formation + Delta-G solvation = 10.833483 kcal
Electronic energy + Delta-G solvation = -31141.430904 eV
Core-core repulsion = 26939.513556 eV
Total energy + Delta-G solvation = -4201.917348 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-42.47627 -41.07926 -40.04052 -38.26256 -36.75757 -35.84221 -35.02185 -34.10520
-33.32076 -33.07118 -32.13273 -29.01630 -27.33666 -26.32221 -25.89216 -25.34446
-24.43241 -22.98671 -21.82053 -21.14425 -20.38418 -19.85665 -18.96701 -18.65556
-18.07114 -17.72501 -17.13328 -16.81655 -16.46418 -16.00693 -15.94495 -15.73777
-15.58927 -15.38130 -15.24743 -14.95784 -14.70010 -14.61670 -14.34406 -14.18801
-13.80936 -13.69107 -13.52437 -13.14143 -13.05746 -12.90731 -12.75359 -12.50443
-12.42697 -12.15988 -12.12642 -11.98949 -11.71940 -11.51037 -11.50734 -11.41364
-10.71163 -10.40723 -10.32633 -10.12170 -10.01200 -9.48314 -8.85451 -8.46586
-5.95552 -0.54531 -0.12341 1.36900 1.39318 1.52905 1.82795 2.00162
2.07494 2.28841 2.69667 2.98901 3.03938 3.10012 3.20558 3.34202
3.43002 3.60927 3.77654 3.86346 3.96542 4.04377 4.15769 4.28870
4.30229 4.34464 4.36950 4.47954 4.56154 4.61474 4.63947 4.67144
4.73029 4.89062 5.01077 5.05604 5.11567 5.19084 5.23355 5.27204
5.39649 5.50526 5.68717 5.74010 5.93306 6.21915 6.47225 6.61229
6.61748 6.89524 7.12716 7.35510 7.57046 8.13045 8.71307
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.011802 B = 0.002898 C = 0.002427
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2371.847389 B = 9659.510596 C =11535.298120
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C -0.015 4.015
3 Si 0.994 3.006
4 H -0.272 1.272
5 H -0.268 1.268
6 H -0.272 1.272
7 C -0.333 4.333
8 H 0.077 0.923
9 N -0.577 5.577
10 C 0.444 3.556
11 O -0.621 6.621
12 C 0.081 3.919
13 N -0.643 5.643
14 C 0.074 3.926
15 C 0.155 3.845
16 H 0.070 0.930
17 C -0.123 4.123
18 C -0.115 4.115
19 C -0.132 4.132
20 C 0.080 3.920
21 N -0.598 5.598
22 C 0.543 3.457
23 O -0.491 6.491
24 C -0.237 4.237
25 C 0.178 3.822
26 N -0.526 5.526
27 C 0.305 3.695
28 N -0.539 5.539
29 C 0.188 3.812
30 H 0.277 0.723
31 H 0.394 0.606
32 H 0.054 0.946
33 H 0.086 0.914
34 H 0.323 0.677
35 H 0.036 0.964
36 H 0.074 0.926
37 H 0.086 0.914
38 H 0.068 0.932
39 H 0.067 0.933
40 H 0.083 0.917
41 H 0.100 0.900
42 H 0.073 0.927
43 H 0.073 0.927
44 H 0.098 0.902
45 H 0.211 0.789
46 H 0.234 0.766
47 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.701 -28.528 -4.147 29.064
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.564 5.564
2 C -0.214 4.214
3 Si 0.818 3.182
4 H -0.197 1.197
5 H -0.193 1.193
6 H -0.197 1.197
7 C -0.463 4.463
8 H 0.095 0.905
9 N -0.214 5.214
10 C 0.231 3.769
11 O -0.508 6.508
12 C -0.052 4.052
13 N -0.275 5.275
14 C -0.055 4.055
15 C 0.052 3.948
16 H 0.088 0.912
17 C -0.161 4.161
18 C -0.153 4.153
19 C -0.170 4.170
20 C -0.042 4.042
21 N -0.333 5.333
22 C 0.328 3.672
23 O -0.364 6.364
24 C -0.245 4.245
25 C 0.012 3.988
26 N -0.239 5.239
27 C 0.019 3.981
28 N -0.253 5.253
29 C 0.022 3.978
30 H 0.087 0.913
31 H 0.228 0.772
32 H 0.072 0.928
33 H 0.104 0.896
34 H 0.141 0.859
35 H 0.054 0.946
36 H 0.093 0.907
37 H 0.104 0.896
38 H 0.087 0.913
39 H 0.086 0.914
40 H 0.102 0.898
41 H 0.119 0.881
42 H 0.092 0.908
43 H 0.092 0.908
44 H 0.115 0.885
45 H 0.227 0.773
46 H 0.250 0.750
47 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges 4.422 -27.933 -5.637 28.837
hybrid contribution -0.745 1.558 1.693 2.419
sum 3.678 -26.375 -3.943 26.920
Atomic orbital electron populations
1.69687 1.06885 1.29242 1.50586 1.26068 0.96575 1.02448 0.96337
0.84915 0.77909 0.76782 0.78634 1.19743 1.19274 1.19667 1.19663
0.92623 0.84102 1.49873 0.90482 1.41945 1.09190 1.04781 1.65498
1.20892 0.88241 0.86106 0.81625 1.90457 1.15849 1.87998 1.56461
1.21293 0.94002 0.88579 1.01330 1.60311 1.18310 1.00245 1.48646
1.22115 0.95697 0.87534 1.00125 1.21281 0.94848 0.95300 0.83340
0.91201 1.21926 0.98693 0.92666 1.02842 1.21492 0.98864 0.98315
0.96601 1.21967 1.01354 0.96190 0.97506 1.22516 0.92786 0.85822
1.03053 1.47785 1.47297 1.26701 1.11537 1.18043 0.82128 0.83001
0.84033 1.91066 1.38100 1.27637 1.79578 1.21940 1.07118 0.97236
0.98166 1.24214 0.87839 0.96152 0.90629 1.68615 1.13547 1.35088
1.06656 1.25915 0.88977 0.82296 1.00903 1.68570 1.15853 1.26782
1.14067 1.23362 0.86493 0.99730 0.88204 0.91323 0.77227 0.92798
0.89602 0.85874 0.94603 0.90729 0.89572 0.91311 0.91442 0.89799
0.88135 0.90812 0.90847 0.88484 0.77336 0.75047 0.82513
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -52.19 13.05 21.66 0.28 -51.90 16
2 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16
3 Si 0.99 44.86 29.55 68.60 2.03 46.89 16
4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16
5 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16
6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16
7 C -0.33 -20.02 9.68 84.04 0.81 -19.20 16
8 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16
9 N -0.58 -31.95 5.29 -306.98 -1.62 -33.58 16
10 C 0.44 23.14 7.82 87.66 0.69 23.83 16
11 O -0.62 -36.97 15.78 -3.07 -0.05 -37.02 16
12 C 0.08 3.21 5.79 85.56 0.50 3.70 16
13 N -0.64 -22.83 3.62 -517.93 -1.87 -24.70 16
14 C 0.07 1.91 4.33 86.30 0.37 2.29 16
15 C 0.16 3.01 3.08 44.97 0.14 3.15 16
16 H 0.07 1.42 8.05 -2.39 -0.02 1.40 16
17 C -0.12 -1.47 5.33 30.67 0.16 -1.31 16
18 C -0.12 -0.90 5.88 30.62 0.18 -0.72 16
19 C -0.13 -0.90 5.74 30.67 0.18 -0.72 16
20 C 0.08 0.98 5.56 86.36 0.48 1.46 16
21 N -0.60 -11.89 2.97 -798.45 -2.37 -14.26 16
22 C 0.54 14.70 7.18 86.78 0.62 15.32 16
23 O -0.49 -17.52 10.45 -3.89 -0.04 -17.56 16
24 C -0.24 -5.67 5.49 -19.91 -0.11 -5.78 16
25 C 0.18 3.09 8.74 85.06 0.74 3.84 16
26 N -0.53 -9.53 10.42 -198.99 -2.07 -11.60 16
27 C 0.31 5.69 12.27 180.84 2.22 7.91 16
28 N -0.54 -13.55 10.42 -198.98 -2.07 -15.62 16
29 C 0.19 5.22 10.91 85.06 0.93 6.15 16
30 H 0.28 14.61 8.31 -92.71 -0.77 13.84 16
31 H 0.39 20.93 7.90 -92.71 -0.73 20.19 16
32 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16
33 H 0.09 3.44 7.92 -2.39 -0.02 3.42 16
34 H 0.32 11.87 8.36 -89.70 -0.75 11.12 16
35 H 0.04 0.82 8.08 -2.38 -0.02 0.80 16
36 H 0.07 2.17 6.30 -2.39 -0.02 2.15 16
37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16
38 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16
39 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16
40 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16
41 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16
42 H 0.07 0.47 7.70 -2.39 -0.02 0.45 16
43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
44 H 0.10 1.12 3.45 -2.39 -0.01 1.12 16
45 H 0.21 2.27 5.06 -2.91 -0.01 2.25 16
46 H 0.23 2.43 8.06 -2.91 -0.02 2.40 16
47 H 0.16 5.02 8.03 -2.91 -0.02 4.99 16
Total: -1.00 -78.63 377.55 0.13 -78.50
By element:
Atomic # 1 Polarization: 41.77 SS G_CDS: -0.45 Total: 41.32 kcal
Atomic # 6 Polarization: 31.17 SS G_CDS: 8.38 Total: 39.54 kcal
Atomic # 7 Polarization: -141.93 SS G_CDS: -9.73 Total: -151.66 kcal
Atomic # 8 Polarization: -54.50 SS G_CDS: -0.09 Total: -54.58 kcal
Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal
Total: -78.63 0.13 -78.50 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001326699164.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.332 kcal
(2) G-P(sol) polarization free energy of solvation -78.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.702 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.498 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.833 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds