Wall clock time and date at job start Wed Apr 1 2020 04:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42104 * 108.57635 * 2 1 4 4 O 1.42099 * 108.57857 * 228.97431 * 2 1 3 5 5 C 1.81406 * 101.92422 * 114.48485 * 2 1 3 6 6 C 1.52998 * 109.47136 * 180.02562 * 5 2 1 7 7 C 1.52997 * 109.47078 * 180.02562 * 6 5 2 8 8 C 1.52998 * 109.47078 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.46902 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99698 * 179.97438 * 9 8 7 11 11 O 1.21577 * 120.00491 * 354.92447 * 10 9 8 12 12 N 1.34779 * 119.99724 * 174.91875 * 10 9 8 13 13 C 1.47077 * 120.88116 * 184.71934 * 12 10 9 14 14 C 1.53694 * 108.28002 * 128.75922 * 13 12 10 15 15 N 1.46902 * 109.25585 * 54.07963 * 14 13 12 16 16 C 1.46906 * 110.99796 * 172.61479 * 15 14 13 17 17 C 1.50705 * 109.46502 * 294.30051 * 16 15 14 18 18 H 1.07994 * 120.00387 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99140 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00555 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99592 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47337 * 59.99542 * 21 19 17 23 23 H 1.48502 * 109.47239 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47174 * 299.99552 * 21 19 17 25 25 C 1.46894 * 111.26942 * 296.76144 * 15 14 13 26 26 C 1.47079 * 120.88359 * 5.00108 * 12 10 9 27 27 H 1.09003 * 109.46871 * 305.51197 * 1 2 3 28 28 H 1.08994 * 109.47339 * 65.51254 * 1 2 3 29 29 H 1.09000 * 109.47073 * 185.51629 * 1 2 3 30 30 H 1.09002 * 109.46432 * 60.00174 * 5 2 1 31 31 H 1.08997 * 109.47019 * 300.00607 * 5 2 1 32 32 H 1.09001 * 109.46881 * 60.00083 * 6 5 2 33 33 H 1.08997 * 109.46742 * 300.00313 * 6 5 2 34 34 H 1.09001 * 109.47273 * 60.00229 * 7 6 5 35 35 H 1.09005 * 109.47083 * 300.00207 * 7 6 5 36 36 H 1.08992 * 109.47311 * 299.99807 * 8 7 6 37 37 H 1.08996 * 109.47284 * 60.00181 * 8 7 6 38 38 H 0.96995 * 119.99930 * 0.02562 * 9 8 7 39 39 H 1.09002 * 109.63307 * 248.52579 * 13 12 10 40 40 H 1.08998 * 109.62919 * 9.10886 * 13 12 10 41 41 H 1.09002 * 109.64637 * 294.08218 * 14 13 12 42 42 H 1.08993 * 109.42829 * 173.95100 * 14 13 12 43 43 H 1.08994 * 109.47151 * 54.29915 * 16 15 14 44 44 H 1.08999 * 109.46938 * 174.30879 * 16 15 14 45 45 H 0.97005 * 120.00001 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.49598 * 303.14255 * 25 15 14 47 47 H 1.09005 * 109.49388 * 183.06457 * 25 15 14 48 48 H 1.09000 * 109.62549 * 350.89650 * 26 12 10 49 49 H 1.09003 * 109.62960 * 111.47040 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1888 -0.7356 1.6153 6 6 3.7055 -0.8183 1.7984 7 6 4.0216 -1.4393 3.1605 8 6 5.5384 -1.5226 3.3434 9 7 5.8410 -2.1167 4.6479 10 6 7.1223 -2.2905 5.0283 11 8 8.0256 -2.0407 4.2538 12 7 7.4022 -2.7411 6.2672 13 6 8.7919 -2.8402 6.7384 14 6 8.8923 -2.1283 8.0968 15 7 7.8859 -2.6847 9.0110 16 6 8.0612 -2.1574 10.3709 17 6 9.3732 -2.6421 10.9321 18 1 10.0125 -3.2784 10.3383 19 6 9.7567 -2.2738 12.2043 20 7 8.9780 -1.4993 12.9276 21 14 11.3832 -2.8739 12.8999 22 1 12.4955 -2.3991 12.0382 23 1 11.5599 -2.3421 14.2751 24 1 11.3870 -4.3585 12.9396 25 6 6.5241 -2.4339 8.5207 26 6 6.3263 -3.1526 7.1818 27 1 -0.3633 0.5970 0.8365 28 1 -0.3634 0.4259 -0.9352 29 1 -0.3633 -1.0229 0.0988 30 1 1.7611 -1.7369 1.6665 31 1 1.7610 -0.1171 2.4043 32 1 4.1328 0.1832 1.7473 33 1 4.1335 -1.4366 1.0094 34 1 3.5944 -2.4408 3.2112 35 1 3.5935 -0.8213 3.9498 36 1 5.9661 -2.1408 2.5542 37 1 5.9660 -0.5213 3.2926 38 1 5.1193 -2.3856 5.2375 39 1 9.0668 -3.8891 6.8502 40 1 9.4568 -2.3589 6.0213 41 1 8.7137 -1.0611 7.9653 42 1 9.8873 -2.2822 8.5141 43 1 8.0591 -1.0678 10.3412 44 1 7.2447 -2.5054 11.0035 45 1 9.2480 -1.2399 13.8225 46 1 6.3784 -1.3624 8.3832 47 1 5.8016 -2.8096 9.2453 48 1 5.3604 -2.8780 6.7579 49 1 6.3687 -4.2310 7.3353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331097885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:11 Heat of formation + Delta-G solvation = -89.904084 kcal Electronic energy + Delta-G solvation = -27944.179317 eV Core-core repulsion = 23841.044861 eV Total energy + Delta-G solvation = -4103.134457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.24651 -37.81786 -37.48941 -36.68083 -36.42740 -34.46480 -34.05595 -32.39440 -30.85869 -30.31726 -29.54411 -28.00085 -25.56504 -24.34610 -23.09755 -22.12137 -21.96200 -20.71371 -19.40542 -19.23731 -17.98429 -17.08560 -16.94642 -16.66912 -16.41107 -16.12181 -16.11154 -15.32718 -14.97313 -14.61297 -14.42567 -14.18484 -14.04488 -13.91857 -13.81716 -13.75942 -13.53878 -13.22701 -12.96925 -12.94825 -12.58947 -12.49524 -12.23433 -12.20111 -12.00602 -11.80166 -11.59000 -11.32203 -11.26783 -11.15601 -10.96323 -10.84780 -10.76652 -10.62180 -10.52545 -10.00877 -9.86352 -9.30760 -9.18478 -8.49247 -8.34064 -7.34620 -6.07370 -4.09266 -0.59625 2.17353 2.67260 3.07639 3.29358 3.31722 3.35805 3.38697 3.42929 3.84512 3.94776 4.04369 4.18754 4.36943 4.38078 4.51936 4.64291 4.69333 4.77104 4.99069 5.04853 5.16841 5.18415 5.19630 5.27224 5.33226 5.38588 5.44091 5.62190 5.69215 5.72932 5.81809 5.92773 6.02297 6.16538 6.38933 6.41650 6.54917 6.67296 7.03248 7.19976 7.26430 7.72665 7.97446 8.00126 8.10744 8.46047 8.66193 8.97744 9.55412 11.03349 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029717 B = 0.001501 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.010463 B =18648.790396 C =19100.816731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.419 3.581 3 O -0.938 6.938 4 O -0.938 6.938 5 C -0.610 4.610 6 C -0.110 4.110 7 C -0.124 4.124 8 C 0.135 3.865 9 N -0.752 5.752 10 C 0.707 3.293 11 O -0.595 6.595 12 N -0.625 5.625 13 C 0.133 3.867 14 C 0.051 3.949 15 N -0.535 5.535 16 C 0.194 3.806 17 C -0.511 4.511 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.040 3.960 26 C 0.119 3.881 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.395 0.605 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.024 0.976 42 H 0.097 0.903 43 H -0.009 1.009 44 H 0.031 0.969 45 H 0.262 0.738 46 H 0.026 0.974 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.459 0.371 -22.709 30.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.602 3.398 3 O -0.935 6.935 4 O -0.936 6.936 5 C -0.739 4.739 6 C -0.149 4.149 7 C -0.163 4.163 8 C 0.010 3.990 9 N -0.411 5.411 10 C 0.408 3.592 11 O -0.474 6.474 12 N -0.363 5.363 13 C 0.010 3.990 14 C -0.079 4.079 15 N -0.260 5.260 16 C 0.069 3.931 17 C -0.549 4.549 18 H 0.082 0.918 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.089 4.089 26 C -0.005 4.005 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.231 0.769 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.043 0.957 42 H 0.115 0.885 43 H 0.009 0.991 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.167 0.467 -23.741 30.516 hybrid contribution -0.504 0.209 1.572 1.664 sum -19.672 0.676 -22.169 29.646 Atomic orbital electron populations 1.30286 1.26950 1.11574 1.11885 1.07887 0.78263 0.75889 0.77803 1.93621 1.78922 1.34452 1.86500 1.93616 1.78942 1.67013 1.53989 1.30338 1.06207 1.14139 1.23198 1.21226 0.90566 1.03651 0.99444 1.21744 0.95600 1.02028 0.96885 1.21168 0.94315 0.98890 0.84613 1.45235 1.06427 1.68817 1.20601 1.15822 0.82986 0.78288 0.82085 1.90892 1.45197 1.58876 1.52434 1.47419 1.08594 1.67875 1.12371 1.21838 0.80494 1.01298 0.95356 1.22457 0.98756 0.95407 0.91234 1.62079 1.00030 1.59497 1.04375 1.19724 0.97925 0.93106 0.82332 1.21107 1.03810 1.30441 0.99552 0.91794 1.24988 0.97453 0.95160 0.96931 1.69945 1.37309 1.35836 1.10680 0.86542 0.83677 0.79136 0.77941 1.20214 1.21384 1.20139 1.22382 0.93935 0.97499 0.95114 1.21761 0.88749 1.00104 0.89872 0.85306 0.85232 0.85332 0.84792 0.84759 0.89564 0.89590 0.90728 0.90684 0.91347 0.91498 0.76873 0.91134 0.89353 0.95734 0.88459 0.99123 0.95081 0.92833 0.95564 0.90149 0.91349 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -0.67 10.62 101.05 1.07 0.40 16 2 S 2.42 10.34 5.36 -107.50 -0.58 9.76 16 3 O -0.94 -8.06 18.10 -57.83 -1.05 -9.11 16 4 O -0.94 -7.92 18.10 -57.83 -1.05 -8.97 16 5 C -0.61 -1.36 5.81 37.16 0.22 -1.15 16 6 C -0.11 -0.55 5.22 -26.73 -0.14 -0.69 16 7 C -0.12 -0.66 5.33 -26.73 -0.14 -0.80 16 8 C 0.13 1.23 5.68 -4.04 -0.02 1.21 16 9 N -0.75 -8.24 5.47 -65.23 -0.36 -8.60 16 10 C 0.71 10.90 8.31 -86.92 -0.72 10.18 16 11 O -0.60 -11.35 15.83 5.30 0.08 -11.27 16 12 N -0.63 -9.49 3.00 -177.92 -0.53 -10.03 16 13 C 0.13 2.20 6.61 -3.37 -0.02 2.18 16 14 C 0.05 0.97 5.47 -3.46 -0.02 0.95 16 15 N -0.53 -10.90 4.62 -235.46 -1.09 -11.98 16 16 C 0.19 4.87 4.72 -4.97 -0.02 4.84 16 17 C -0.51 -13.90 8.41 -34.44 -0.29 -14.19 16 18 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.15 13.29 55.43 0.74 -25.42 16 21 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.04 0.66 5.62 -3.71 -0.02 0.64 16 26 C 0.12 1.53 6.59 -3.61 -0.02 1.51 16 27 H 0.13 -0.08 8.14 -51.92 -0.42 -0.50 16 28 H 0.13 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.13 -0.09 8.14 -51.92 -0.42 -0.51 16 30 H 0.13 0.01 8.14 -51.92 -0.42 -0.42 16 31 H 0.13 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.39 3.31 5.97 -40.82 -0.24 3.07 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.49 7.09 -51.93 -0.37 1.12 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 1.99 6.67 -51.93 -0.35 1.64 16 43 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 44 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 1.24 7.99 -51.93 -0.41 0.82 16 48 H 0.07 0.64 5.63 -51.93 -0.29 0.34 16 49 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 405.48 15.07 6.11 6.11 Total: -1.00 -39.25 405.48 -11.32 -50.58 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -8.35 Total: -3.85 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -0.23 Total: 6.54 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -1.24 Total: -56.03 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -2.01 Total: -29.35 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 10.34 SS G_CDS: -0.58 Total: 9.76 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -39.25 -11.32 -50.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331097885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.326 kcal (2) G-P(sol) polarization free energy of solvation -39.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds