Wall clock time and date at job start Wed Apr 1 2020 05:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 H 1.09002 * 110.43200 * 34.30045 * 14 13 12 16 16 C 1.54268 * 110.48647 * 271.75804 * 14 13 12 17 17 C 1.53872 * 106.59980 * 217.71083 * 16 14 13 18 18 C 1.54270 * 106.59691 * 0.02562 * 17 16 14 19 19 H 1.09002 * 110.48521 * 264.79695 * 18 17 16 20 20 C 1.53001 * 110.48422 * 142.28900 * 18 17 16 21 21 N 1.46491 * 109.47329 * 66.45352 * 20 18 17 22 22 C 1.34778 * 120.00069 * 180.02562 * 21 20 18 23 23 O 1.21517 * 119.99974 * 359.97438 * 22 21 20 24 24 C 1.48156 * 119.99947 * 179.97438 * 22 21 20 25 25 C 1.39719 * 120.18137 * 179.72097 * 24 22 21 26 26 C 1.38821 * 117.89730 * 179.80565 * 25 24 22 27 27 C 1.38565 * 118.07183 * 0.44475 * 26 25 24 28 28 N 1.32180 * 120.06481 * 359.78842 * 27 26 25 29 29 N 1.28344 * 122.30130 * 359.97438 * 28 27 26 30 30 C 1.54886 * 110.48377 * 156.84335 * 14 13 12 31 31 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 34 34 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 35 35 H 1.00899 * 111.00283 * 303.95218 * 13 12 10 36 36 H 1.09000 * 110.03388 * 336.99938 * 16 14 13 37 37 H 1.09009 * 110.02870 * 98.42652 * 16 14 13 38 38 H 1.09002 * 110.03206 * 119.28642 * 17 16 14 39 39 H 1.08998 * 110.03366 * 240.67007 * 17 16 14 40 40 H 1.09001 * 109.47078 * 186.45393 * 20 18 17 41 41 H 1.09001 * 109.47221 * 306.44851 * 20 18 17 42 42 H 0.97002 * 120.00261 * 359.97438 * 21 20 18 43 43 H 1.08007 * 121.05048 * 0.02562 * 25 24 22 44 44 H 1.08007 * 120.96338 * 180.18618 * 26 25 24 45 45 H 1.08001 * 119.97066 * 179.77037 * 27 26 25 46 46 H 1.08999 * 110.75868 * 274.93208 * 30 14 13 47 47 H 1.08997 * 110.75901 * 38.30470 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 1 0.5750 -7.2030 -0.5769 16 6 1.2025 -7.7245 1.4429 17 6 1.4007 -9.2501 1.4737 18 6 1.8107 -9.6702 0.0471 19 1 0.9385 -9.9944 -0.5206 20 6 2.8594 -10.7831 0.0972 21 7 2.2575 -11.9964 0.6555 22 6 2.9989 -13.1132 0.7961 23 8 4.1664 -13.1137 0.4592 24 6 2.3903 -14.3400 1.3613 25 6 3.1538 -15.5015 1.5033 26 6 2.5369 -16.6224 2.0421 27 6 1.2011 -16.5243 2.3971 28 7 0.5518 -15.3861 2.2237 29 7 1.1149 -14.3434 1.7307 30 6 2.4125 -8.3831 -0.5726 31 1 -0.4850 0.8401 -0.0004 32 1 0.3535 -2.3906 0.0002 33 1 0.6170 -4.9209 0.8886 34 1 0.6176 -4.9205 -0.8913 35 1 2.8335 -5.9120 -0.7829 36 1 1.8946 -7.2440 2.1344 37 1 0.1751 -7.4760 1.7093 38 1 2.1890 -9.5100 2.1802 39 1 0.4698 -9.7419 1.7559 40 1 3.2207 -10.9875 -0.9107 41 1 3.6930 -10.4689 0.7252 42 1 1.3256 -11.9959 0.9248 43 1 4.1920 -15.5255 1.2067 44 1 3.0813 -17.5455 2.1767 45 1 0.6899 -17.3786 2.8155 46 1 2.3531 -8.4113 -1.6606 47 1 3.4424 -8.2431 -0.2445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479483586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:48 Heat of formation + Delta-G solvation = -21.621201 kcal Electronic energy + Delta-G solvation = -28415.015265 eV Core-core repulsion = 24211.690576 eV Total energy + Delta-G solvation = -4203.324689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.73662 -39.95625 -38.87319 -37.96831 -35.54872 -34.14620 -33.80237 -33.55605 -33.04438 -31.19052 -29.76615 -28.64054 -26.56357 -25.62625 -25.18632 -24.23027 -23.61229 -21.55610 -20.63960 -19.69103 -19.18650 -18.75494 -17.93807 -17.84518 -17.29459 -16.61343 -16.19764 -16.01794 -15.92611 -15.24022 -15.09995 -14.97276 -14.52478 -14.45785 -14.29895 -13.95021 -13.78518 -13.60907 -13.49098 -13.30468 -12.62812 -12.38821 -12.15004 -11.74167 -11.61772 -11.41066 -11.27514 -11.13912 -11.06999 -10.97375 -10.95883 -10.84056 -10.70874 -10.59019 -10.43585 -10.42526 -10.37864 -10.19078 -9.48788 -9.47777 -8.41526 -8.03298 -7.93303 -6.39467 -3.80320 -0.16289 0.10885 2.14094 2.50176 3.07740 3.21896 3.27315 3.29274 3.31933 3.78052 3.93731 3.96190 4.05549 4.11833 4.29837 4.31084 4.35518 4.40844 4.48449 4.74547 5.00440 5.06667 5.09498 5.20912 5.24383 5.27983 5.29956 5.38244 5.42409 5.46638 5.52056 5.59935 5.76877 5.79110 5.82293 5.95351 5.98491 6.04437 6.12395 6.23245 6.27940 6.40735 6.97954 7.32259 7.57094 7.61685 7.72508 7.92564 8.08666 8.63903 9.20131 9.56904 10.08612 10.78225 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.038604 B = 0.001366 C = 0.001338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.141028 B =20489.817083 C =20927.942639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.662 5.662 14 C 0.082 3.918 15 H 0.048 0.952 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.103 4.103 19 H 0.082 0.918 20 C 0.124 3.876 21 N -0.703 5.703 22 C 0.574 3.426 23 O -0.527 6.527 24 C 0.025 3.975 25 C -0.066 4.066 26 C -0.121 4.121 27 C 0.056 3.944 28 N -0.240 5.240 29 N -0.211 5.211 30 C -0.116 4.116 31 H 0.272 0.728 32 H 0.392 0.608 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.350 0.650 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.413 0.587 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.180 0.820 46 H 0.069 0.931 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 -34.315 2.506 34.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.294 5.294 14 C -0.028 4.028 15 H 0.066 0.934 16 C -0.155 4.155 17 C -0.157 4.157 18 C -0.122 4.122 19 H 0.101 0.899 20 C 0.002 3.998 21 N -0.354 5.354 22 C 0.356 3.644 23 O -0.402 6.402 24 C -0.121 4.121 25 C -0.095 4.095 26 C -0.150 4.150 27 C -0.107 4.107 28 N -0.083 5.083 29 N -0.058 5.058 30 C -0.155 4.155 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.170 0.830 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.249 0.751 43 H 0.181 0.819 44 H 0.177 0.823 45 H 0.197 0.803 46 H 0.087 0.913 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.521 -33.226 3.065 33.371 hybrid contribution 0.215 -0.078 -0.826 0.857 sum -0.305 -33.304 2.239 33.381 Atomic orbital electron populations 1.69608 1.05926 1.28221 1.50627 1.25250 0.95624 0.99684 0.97329 0.85920 0.78758 0.80483 0.79068 1.19937 1.20989 1.19890 1.19661 0.93356 0.82289 1.47664 0.87987 1.41860 1.09180 1.04603 1.64439 1.19844 0.88399 0.84754 0.84393 1.90521 1.13773 1.87088 1.55367 1.21713 0.94388 0.91009 1.01062 1.60169 1.18590 0.99581 1.51095 1.22373 0.95411 0.89010 0.95993 0.93408 1.22197 1.01692 0.94278 0.97327 1.22217 1.01319 0.96441 0.95717 1.22201 0.97913 0.94316 0.97791 0.89921 1.21585 0.96171 0.82678 0.99400 1.45873 1.15528 1.10954 1.63086 1.17556 0.85724 0.82341 0.78787 1.90832 1.15680 1.83808 1.49911 1.22881 0.93285 0.96061 0.99901 1.22487 1.02444 0.91371 0.93188 1.22505 0.95900 1.00070 0.96504 1.24570 0.93139 0.98160 0.94822 1.73168 1.30052 0.96439 1.08619 1.73221 1.07928 1.19986 1.04681 1.22644 1.00485 0.92606 0.99727 0.91853 0.77477 0.89700 0.93970 0.83036 0.90171 0.92186 0.91472 0.91813 0.90878 0.90516 0.75099 0.81855 0.82268 0.80330 0.91250 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.46 9.68 -14.94 -0.14 -8.60 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.45 5.29 -10.96 -0.06 -14.50 16 10 C 0.44 10.51 7.82 -10.98 -0.09 10.42 16 11 O -0.58 -16.00 15.78 5.55 0.09 -15.91 16 12 C 0.05 0.91 6.02 -4.97 -0.03 0.88 16 13 N -0.66 -10.58 5.92 -106.23 -0.63 -11.21 16 14 C 0.08 0.98 3.18 -66.05 -0.21 0.77 16 15 H 0.05 0.56 7.85 -51.93 -0.41 0.15 16 16 C -0.12 -1.31 6.51 -25.61 -0.17 -1.48 16 17 C -0.12 -1.04 6.05 -25.61 -0.15 -1.20 16 18 C -0.10 -0.82 2.93 -88.89 -0.26 -1.08 16 19 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 20 C 0.12 1.05 4.99 -4.05 -0.02 1.03 16 21 N -0.70 -5.86 5.39 -61.15 -0.33 -6.19 16 22 C 0.57 5.63 7.82 -12.19 -0.10 5.53 16 23 O -0.53 -6.55 16.39 5.35 0.09 -6.47 16 24 C 0.02 0.21 6.83 -82.83 -0.57 -0.36 16 25 C -0.07 -0.38 9.73 -38.81 -0.38 -0.76 16 26 C -0.12 -0.40 10.20 -39.25 -0.40 -0.80 16 27 C 0.06 0.25 11.31 -17.28 -0.20 0.05 16 28 N -0.24 -1.96 11.51 30.58 0.35 -1.61 16 29 N -0.21 -1.90 10.75 33.32 0.36 -1.54 16 30 C -0.12 -1.13 5.73 -24.68 -0.14 -1.27 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.35 5.76 8.14 -39.29 -0.32 5.44 16 36 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 37 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.07 0.61 7.77 -51.93 -0.40 0.21 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16 42 H 0.41 3.00 7.68 -40.82 -0.31 2.69 16 43 H 0.16 0.78 7.72 -52.48 -0.41 0.37 16 44 H 0.16 -0.04 8.06 -52.48 -0.42 -0.46 16 45 H 0.18 0.14 8.06 -52.49 -0.42 -0.28 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -34.70 398.95 -8.10 -42.81 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -6.74 Total: 12.75 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.94 Total: 3.65 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.42 Total: -59.03 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.18 Total: -22.37 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.70 -8.10 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479483586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.184 kcal (2) G-P(sol) polarization free energy of solvation -34.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds