Wall clock time and date at job start Wed Apr 1 2020 05:03:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31417 * 1
3 3 Si 1.86800 * 119.99547 * 2 1
4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1
5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1
6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1
7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1
9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1
10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2
11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7
12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7
13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9
14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10
15 15 H 1.09002 * 110.43200 * 34.30045 * 14 13 12
16 16 C 1.54268 * 110.48647 * 271.75804 * 14 13 12
17 17 C 1.53872 * 106.59980 * 217.71083 * 16 14 13
18 18 C 1.54270 * 106.59691 * 0.02562 * 17 16 14
19 19 H 1.09002 * 110.48521 * 264.79695 * 18 17 16
20 20 C 1.53001 * 110.48422 * 142.28900 * 18 17 16
21 21 N 1.46491 * 109.47329 * 66.45352 * 20 18 17
22 22 C 1.34778 * 120.00069 * 180.02562 * 21 20 18
23 23 O 1.21517 * 119.99974 * 359.97438 * 22 21 20
24 24 C 1.48156 * 119.99947 * 179.97438 * 22 21 20
25 25 C 1.39719 * 120.18137 * 179.72097 * 24 22 21
26 26 C 1.38821 * 117.89730 * 179.80565 * 25 24 22
27 27 C 1.38565 * 118.07183 * 0.44475 * 26 25 24
28 28 N 1.32180 * 120.06481 * 359.78842 * 27 26 25
29 29 N 1.28344 * 122.30130 * 359.97438 * 28 27 26
30 30 C 1.54886 * 110.48377 * 156.84335 * 14 13 12
31 31 H 0.97000 * 119.99884 * 0.02562 * 1 2 3
32 32 H 0.96995 * 120.00282 * 359.97438 * 9 7 2
33 33 H 1.09002 * 109.47060 * 299.99722 * 12 10 9
34 34 H 1.09001 * 109.47380 * 59.99809 * 12 10 9
35 35 H 1.00899 * 111.00283 * 303.95218 * 13 12 10
36 36 H 1.09000 * 110.03388 * 336.99938 * 16 14 13
37 37 H 1.09009 * 110.02870 * 98.42652 * 16 14 13
38 38 H 1.09002 * 110.03206 * 119.28642 * 17 16 14
39 39 H 1.08998 * 110.03366 * 240.67007 * 17 16 14
40 40 H 1.09001 * 109.47078 * 186.45393 * 20 18 17
41 41 H 1.09001 * 109.47221 * 306.44851 * 20 18 17
42 42 H 0.97002 * 120.00261 * 359.97438 * 21 20 18
43 43 H 1.08007 * 121.05048 * 0.02562 * 25 24 22
44 44 H 1.08007 * 120.96338 * 180.18618 * 26 25 24
45 45 H 1.08001 * 119.97066 * 179.77037 * 27 26 25
46 46 H 1.08999 * 110.75868 * 274.93208 * 30 14 13
47 47 H 1.08997 * 110.75901 * 38.30470 * 30 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3142 0.0000 0.0000
3 14 2.2480 1.6178 0.0000
4 1 3.1019 1.6965 -1.2124
5 1 1.2831 2.7465 -0.0006
6 1 3.1018 1.6965 1.2125
7 6 2.0089 -1.2032 -0.0005
8 1 3.0889 -1.2033 -0.0001
9 7 1.3234 -2.3906 -0.0005
10 6 1.9974 -3.5578 -0.0005
11 8 3.2104 -3.5578 -0.0010
12 6 1.2439 -4.8629 -0.0011
13 7 2.1986 -5.9794 -0.0016
14 6 1.4984 -7.2708 -0.0016
15 1 0.5750 -7.2030 -0.5769
16 6 1.2025 -7.7245 1.4429
17 6 1.4007 -9.2501 1.4737
18 6 1.8107 -9.6702 0.0471
19 1 0.9385 -9.9944 -0.5206
20 6 2.8594 -10.7831 0.0972
21 7 2.2575 -11.9964 0.6555
22 6 2.9989 -13.1132 0.7961
23 8 4.1664 -13.1137 0.4592
24 6 2.3903 -14.3400 1.3613
25 6 3.1538 -15.5015 1.5033
26 6 2.5369 -16.6224 2.0421
27 6 1.2011 -16.5243 2.3971
28 7 0.5518 -15.3861 2.2237
29 7 1.1149 -14.3434 1.7307
30 6 2.4125 -8.3831 -0.5726
31 1 -0.4850 0.8401 -0.0004
32 1 0.3535 -2.3906 0.0002
33 1 0.6170 -4.9209 0.8886
34 1 0.6176 -4.9205 -0.8913
35 1 2.8335 -5.9120 -0.7829
36 1 1.8946 -7.2440 2.1344
37 1 0.1751 -7.4760 1.7093
38 1 2.1890 -9.5100 2.1802
39 1 0.4698 -9.7419 1.7559
40 1 3.2207 -10.9875 -0.9107
41 1 3.6930 -10.4689 0.7252
42 1 1.3256 -11.9959 0.9248
43 1 4.1920 -15.5255 1.2067
44 1 3.0813 -17.5455 2.1767
45 1 0.6899 -17.3786 2.8155
46 1 2.3531 -8.4113 -1.6606
47 1 3.4424 -8.2431 -0.2445
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001479483586.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:03:47
Heat of formation + Delta-G solvation = -49.005173 kcal
Electronic energy + Delta-G solvation = -28416.202723 eV
Core-core repulsion = 24211.690576 eV
Total energy + Delta-G solvation = -4204.512147 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-42.22597 -40.69131 -40.22286 -39.37324 -36.55699 -35.91570 -34.74044 -34.17999
-33.68923 -33.24270 -30.58903 -29.72801 -27.72255 -26.71314 -25.69570 -25.37474
-24.74134 -22.23513 -21.51870 -20.98806 -20.54834 -19.89321 -19.37504 -18.42956
-17.85961 -17.61012 -17.32888 -16.82400 -16.76011 -16.67192 -16.22512 -15.99053
-15.84970 -15.57187 -15.38482 -15.08155 -14.77822 -14.45030 -14.36000 -14.15818
-14.12755 -13.52922 -13.49307 -13.12275 -12.84133 -12.69229 -12.58101 -12.42641
-12.12753 -12.10672 -11.98542 -11.86636 -11.66282 -11.50248 -11.33792 -11.32628
-11.21850 -11.21056 -10.88158 -10.33442 -10.21233 -10.01696 -9.29799 -8.46481
-5.95536 -0.62141 -0.28091 1.39962 1.41748 1.52803 1.52887 1.86620
2.05327 2.29507 2.57121 2.77496 2.95411 3.20721 3.40024 3.47925
3.55797 3.58638 3.67426 3.78091 3.92032 3.98093 4.13679 4.24515
4.31308 4.35419 4.46052 4.53924 4.56956 4.57978 4.68925 4.69956
4.75618 4.83075 4.87434 4.96994 5.02872 5.13825 5.20488 5.21817
5.28199 5.39566 5.41400 5.49922 5.93646 6.18179 6.30132 6.47052
6.60363 6.93346 7.12439 7.45926 7.56121 8.11609 8.70653
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.038604 B = 0.001366 C = 0.001338
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 725.141028 B =20489.817083 C =20927.942639
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C -0.011 4.011
3 Si 0.993 3.007
4 H -0.271 1.271
5 H -0.269 1.269
6 H -0.273 1.273
7 C -0.337 4.337
8 H 0.078 0.922
9 N -0.573 5.573
10 C 0.436 3.564
11 O -0.624 6.624
12 C 0.067 3.933
13 N -0.677 5.677
14 C 0.080 3.920
15 H 0.061 0.939
16 C -0.116 4.116
17 C -0.113 4.113
18 C -0.088 4.088
19 H 0.101 0.899
20 C 0.129 3.871
21 N -0.696 5.696
22 C 0.571 3.429
23 O -0.562 6.562
24 C 0.006 3.994
25 C -0.078 4.078
26 C -0.099 4.099
27 C 0.060 3.940
28 N -0.275 5.275
29 N -0.233 5.233
30 C -0.112 4.112
31 H 0.278 0.722
32 H 0.396 0.604
33 H 0.099 0.901
34 H 0.066 0.934
35 H 0.345 0.655
36 H 0.054 0.946
37 H 0.066 0.934
38 H 0.060 0.940
39 H 0.081 0.919
40 H 0.073 0.927
41 H 0.064 0.936
42 H 0.419 0.581
43 H 0.170 0.830
44 H 0.203 0.797
45 H 0.218 0.782
46 H 0.082 0.918
47 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.796 -36.474 2.639 36.613
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.211 4.211
3 Si 0.816 3.184
4 H -0.197 1.197
5 H -0.194 1.194
6 H -0.198 1.198
7 C -0.467 4.467
8 H 0.096 0.904
9 N -0.210 5.210
10 C 0.224 3.776
11 O -0.510 6.510
12 C -0.066 4.066
13 N -0.310 5.310
14 C -0.029 4.029
15 H 0.079 0.921
16 C -0.155 4.155
17 C -0.151 4.151
18 C -0.108 4.108
19 H 0.119 0.881
20 C 0.006 3.994
21 N -0.346 5.346
22 C 0.355 3.645
23 O -0.440 6.440
24 C -0.140 4.140
25 C -0.107 4.107
26 C -0.128 4.128
27 C -0.103 4.103
28 N -0.117 5.117
29 N -0.080 5.080
30 C -0.151 4.151
31 H 0.087 0.913
32 H 0.230 0.770
33 H 0.117 0.883
34 H 0.084 0.916
35 H 0.164 0.836
36 H 0.073 0.927
37 H 0.085 0.915
38 H 0.079 0.921
39 H 0.099 0.901
40 H 0.091 0.909
41 H 0.082 0.918
42 H 0.256 0.744
43 H 0.187 0.813
44 H 0.220 0.780
45 H 0.234 0.766
46 H 0.100 0.900
47 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -1.651 -35.396 3.207 35.579
hybrid contribution 0.545 0.464 -0.821 1.089
sum -1.106 -34.932 2.386 35.030
Atomic orbital electron populations
1.69668 1.06819 1.29371 1.50197 1.26030 0.96541 1.02370 0.96175
0.84992 0.77776 0.76646 0.78938 1.19661 1.19383 1.19801 1.19647
0.92732 0.84113 1.50167 0.90364 1.41929 1.09311 1.04710 1.65045
1.20924 0.88276 0.86219 0.82174 1.90488 1.15890 1.87984 1.56672
1.21557 0.94054 0.88174 1.02775 1.60174 1.18898 1.00701 1.51196
1.22506 0.96018 0.87513 0.96848 0.92082 1.22179 1.01315 0.95726
0.96251 1.22167 1.02022 0.94783 0.96092 1.22092 0.98119 0.93225
0.97327 0.88079 1.21494 0.95976 0.82878 0.99093 1.45832 1.15704
1.10609 1.62480 1.17849 0.85372 0.83043 0.78256 1.90801 1.17043
1.84493 1.51617 1.22762 0.93777 0.96252 1.01251 1.22718 1.02798
0.91512 0.93649 1.22984 0.95447 1.00551 0.93817 1.25226 0.93765
0.97887 0.93380 1.73074 1.31192 0.97584 1.09887 1.73138 1.08158
1.21019 1.05649 1.22605 0.99420 0.92537 1.00523 0.91274 0.76980
0.88251 0.91602 0.83614 0.92692 0.91548 0.92117 0.90067 0.90911
0.91809 0.74365 0.81257 0.77965 0.76574 0.89970 0.91019
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -50.00 13.05 21.66 0.28 -49.72 16
2 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16
3 Si 0.99 43.34 29.55 68.60 2.03 45.37 16
4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16
5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16
6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16
7 C -0.34 -19.45 9.68 84.04 0.81 -18.63 16
8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16
9 N -0.57 -29.89 5.29 -306.98 -1.62 -31.51 16
10 C 0.44 21.19 7.82 87.66 0.69 21.87 16
11 O -0.62 -35.28 15.78 -3.07 -0.05 -35.33 16
12 C 0.07 2.33 6.02 85.56 0.52 2.85 16
13 N -0.68 -21.49 5.92 -490.01 -2.90 -24.39 16
14 C 0.08 1.82 3.18 45.99 0.15 1.97 16
15 H 0.06 1.27 7.85 -2.39 -0.02 1.25 16
16 C -0.12 -2.51 6.51 31.32 0.20 -2.31 16
17 C -0.11 -1.84 6.05 31.32 0.19 -1.65 16
18 C -0.09 -1.29 2.93 -9.68 -0.03 -1.32 16
19 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16
20 C 0.13 2.12 4.99 86.38 0.43 2.55 16
21 N -0.70 -11.46 5.39 -465.68 -2.51 -13.97 16
22 C 0.57 11.41 7.82 86.88 0.68 12.09 16
23 O -0.56 -14.39 16.39 -3.77 -0.06 -14.45 16
24 C 0.01 0.10 6.83 41.99 0.29 0.39 16
25 C -0.08 -0.82 9.73 22.77 0.22 -0.59 16
26 C -0.10 -0.36 10.20 22.49 0.23 -0.13 16
27 C 0.06 0.37 11.31 84.72 0.96 1.32 16
28 N -0.27 -4.17 11.51 -57.15 -0.66 -4.83 16
29 N -0.23 -4.11 10.75 -48.48 -0.52 -4.63 16
30 C -0.11 -2.07 5.73 31.93 0.18 -1.89 16
31 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16
32 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16
33 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16
34 H 0.07 2.01 8.08 -2.39 -0.02 1.99 16
35 H 0.34 11.45 8.14 -89.69 -0.73 10.72 16
36 H 0.05 1.47 8.04 -2.39 -0.02 1.45 16
37 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16
38 H 0.06 1.09 7.77 -2.39 -0.02 1.07 16
39 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16
40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
41 H 0.06 1.23 8.05 -2.39 -0.02 1.22 16
42 H 0.42 5.84 7.68 -92.71 -0.71 5.13 16
43 H 0.17 1.48 7.72 -2.91 -0.02 1.46 16
44 H 0.20 -1.08 8.06 -2.91 -0.02 -1.10 16
45 H 0.22 -0.53 8.06 -2.91 -0.02 -0.56 16
46 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
47 H 0.07 1.52 8.06 -2.39 -0.02 1.50 16
Total: -1.00 -77.95 398.95 -1.18 -79.13
By element:
Atomic # 1 Polarization: 39.10 SS G_CDS: -1.14 Total: 37.96 kcal
Atomic # 6 Polarization: 10.39 SS G_CDS: 5.98 Total: 16.37 kcal
Atomic # 7 Polarization: -121.12 SS G_CDS: -7.93 Total: -129.05 kcal
Atomic # 8 Polarization: -49.67 SS G_CDS: -0.11 Total: -49.78 kcal
Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal
Total: -77.95 -1.18 -79.13 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001479483586.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.124 kcal
(2) G-P(sol) polarization free energy of solvation -77.952 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.829 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.177 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.129 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.005 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds