Wall clock time and date at job start Wed Apr 1 2020 05:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 H 1.09002 * 110.43200 * 34.30045 * 14 13 12 16 16 C 1.54268 * 110.48647 * 271.75804 * 14 13 12 17 17 C 1.53872 * 106.59980 * 217.71083 * 16 14 13 18 18 C 1.54270 * 106.59691 * 0.02562 * 17 16 14 19 19 H 1.09002 * 110.48521 * 264.79695 * 18 17 16 20 20 C 1.53001 * 110.48422 * 142.28900 * 18 17 16 21 21 N 1.46491 * 109.47329 * 66.45352 * 20 18 17 22 22 C 1.34778 * 120.00069 * 180.02562 * 21 20 18 23 23 O 1.21517 * 119.99974 * 359.97438 * 22 21 20 24 24 C 1.48156 * 119.99947 * 179.97438 * 22 21 20 25 25 C 1.39719 * 120.18137 * 179.72097 * 24 22 21 26 26 C 1.38821 * 117.89730 * 179.80565 * 25 24 22 27 27 C 1.38565 * 118.07183 * 0.44475 * 26 25 24 28 28 N 1.32180 * 120.06481 * 359.78842 * 27 26 25 29 29 N 1.28344 * 122.30130 * 359.97438 * 28 27 26 30 30 C 1.54886 * 110.48377 * 156.84335 * 14 13 12 31 31 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 34 34 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 35 35 H 1.00899 * 111.00283 * 303.95218 * 13 12 10 36 36 H 1.09000 * 110.03388 * 336.99938 * 16 14 13 37 37 H 1.09009 * 110.02870 * 98.42652 * 16 14 13 38 38 H 1.09002 * 110.03206 * 119.28642 * 17 16 14 39 39 H 1.08998 * 110.03366 * 240.67007 * 17 16 14 40 40 H 1.09001 * 109.47078 * 186.45393 * 20 18 17 41 41 H 1.09001 * 109.47221 * 306.44851 * 20 18 17 42 42 H 0.97002 * 120.00261 * 359.97438 * 21 20 18 43 43 H 1.08007 * 121.05048 * 0.02562 * 25 24 22 44 44 H 1.08007 * 120.96338 * 180.18618 * 26 25 24 45 45 H 1.08001 * 119.97066 * 179.77037 * 27 26 25 46 46 H 1.08999 * 110.75868 * 274.93208 * 30 14 13 47 47 H 1.08997 * 110.75901 * 38.30470 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 1 0.5750 -7.2030 -0.5769 16 6 1.2025 -7.7245 1.4429 17 6 1.4007 -9.2501 1.4737 18 6 1.8107 -9.6702 0.0471 19 1 0.9385 -9.9944 -0.5206 20 6 2.8594 -10.7831 0.0972 21 7 2.2575 -11.9964 0.6555 22 6 2.9989 -13.1132 0.7961 23 8 4.1664 -13.1137 0.4592 24 6 2.3903 -14.3400 1.3613 25 6 3.1538 -15.5015 1.5033 26 6 2.5369 -16.6224 2.0421 27 6 1.2011 -16.5243 2.3971 28 7 0.5518 -15.3861 2.2237 29 7 1.1149 -14.3434 1.7307 30 6 2.4125 -8.3831 -0.5726 31 1 -0.4850 0.8401 -0.0004 32 1 0.3535 -2.3906 0.0002 33 1 0.6170 -4.9209 0.8886 34 1 0.6176 -4.9205 -0.8913 35 1 2.8335 -5.9120 -0.7829 36 1 1.8946 -7.2440 2.1344 37 1 0.1751 -7.4760 1.7093 38 1 2.1890 -9.5100 2.1802 39 1 0.4698 -9.7419 1.7559 40 1 3.2207 -10.9875 -0.9107 41 1 3.6930 -10.4689 0.7252 42 1 1.3256 -11.9959 0.9248 43 1 4.1920 -15.5255 1.2067 44 1 3.0813 -17.5455 2.1767 45 1 0.6899 -17.3786 2.8155 46 1 2.3531 -8.4113 -1.6606 47 1 3.4424 -8.2431 -0.2445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479483586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:47 Heat of formation + Delta-G solvation = -49.005173 kcal Electronic energy + Delta-G solvation = -28416.202723 eV Core-core repulsion = 24211.690576 eV Total energy + Delta-G solvation = -4204.512147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.22597 -40.69131 -40.22286 -39.37324 -36.55699 -35.91570 -34.74044 -34.17999 -33.68923 -33.24270 -30.58903 -29.72801 -27.72255 -26.71314 -25.69570 -25.37474 -24.74134 -22.23513 -21.51870 -20.98806 -20.54834 -19.89321 -19.37504 -18.42956 -17.85961 -17.61012 -17.32888 -16.82400 -16.76011 -16.67192 -16.22512 -15.99053 -15.84970 -15.57187 -15.38482 -15.08155 -14.77822 -14.45030 -14.36000 -14.15818 -14.12755 -13.52922 -13.49307 -13.12275 -12.84133 -12.69229 -12.58101 -12.42641 -12.12753 -12.10672 -11.98542 -11.86636 -11.66282 -11.50248 -11.33792 -11.32628 -11.21850 -11.21056 -10.88158 -10.33442 -10.21233 -10.01696 -9.29799 -8.46481 -5.95536 -0.62141 -0.28091 1.39962 1.41748 1.52803 1.52887 1.86620 2.05327 2.29507 2.57121 2.77496 2.95411 3.20721 3.40024 3.47925 3.55797 3.58638 3.67426 3.78091 3.92032 3.98093 4.13679 4.24515 4.31308 4.35419 4.46052 4.53924 4.56956 4.57978 4.68925 4.69956 4.75618 4.83075 4.87434 4.96994 5.02872 5.13825 5.20488 5.21817 5.28199 5.39566 5.41400 5.49922 5.93646 6.18179 6.30132 6.47052 6.60363 6.93346 7.12439 7.45926 7.56121 8.11609 8.70653 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.038604 B = 0.001366 C = 0.001338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.141028 B =20489.817083 C =20927.942639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.067 3.933 13 N -0.677 5.677 14 C 0.080 3.920 15 H 0.061 0.939 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.088 4.088 19 H 0.101 0.899 20 C 0.129 3.871 21 N -0.696 5.696 22 C 0.571 3.429 23 O -0.562 6.562 24 C 0.006 3.994 25 C -0.078 4.078 26 C -0.099 4.099 27 C 0.060 3.940 28 N -0.275 5.275 29 N -0.233 5.233 30 C -0.112 4.112 31 H 0.278 0.722 32 H 0.396 0.604 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.345 0.655 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.419 0.581 43 H 0.170 0.830 44 H 0.203 0.797 45 H 0.218 0.782 46 H 0.082 0.918 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 -36.474 2.639 36.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.066 4.066 13 N -0.310 5.310 14 C -0.029 4.029 15 H 0.079 0.921 16 C -0.155 4.155 17 C -0.151 4.151 18 C -0.108 4.108 19 H 0.119 0.881 20 C 0.006 3.994 21 N -0.346 5.346 22 C 0.355 3.645 23 O -0.440 6.440 24 C -0.140 4.140 25 C -0.107 4.107 26 C -0.128 4.128 27 C -0.103 4.103 28 N -0.117 5.117 29 N -0.080 5.080 30 C -0.151 4.151 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.164 0.836 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.256 0.744 43 H 0.187 0.813 44 H 0.220 0.780 45 H 0.234 0.766 46 H 0.100 0.900 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.651 -35.396 3.207 35.579 hybrid contribution 0.545 0.464 -0.821 1.089 sum -1.106 -34.932 2.386 35.030 Atomic orbital electron populations 1.69668 1.06819 1.29371 1.50197 1.26030 0.96541 1.02370 0.96175 0.84992 0.77776 0.76646 0.78938 1.19661 1.19383 1.19801 1.19647 0.92732 0.84113 1.50167 0.90364 1.41929 1.09311 1.04710 1.65045 1.20924 0.88276 0.86219 0.82174 1.90488 1.15890 1.87984 1.56672 1.21557 0.94054 0.88174 1.02775 1.60174 1.18898 1.00701 1.51196 1.22506 0.96018 0.87513 0.96848 0.92082 1.22179 1.01315 0.95726 0.96251 1.22167 1.02022 0.94783 0.96092 1.22092 0.98119 0.93225 0.97327 0.88079 1.21494 0.95976 0.82878 0.99093 1.45832 1.15704 1.10609 1.62480 1.17849 0.85372 0.83043 0.78256 1.90801 1.17043 1.84493 1.51617 1.22762 0.93777 0.96252 1.01251 1.22718 1.02798 0.91512 0.93649 1.22984 0.95447 1.00551 0.93817 1.25226 0.93765 0.97887 0.93380 1.73074 1.31192 0.97584 1.09887 1.73138 1.08158 1.21019 1.05649 1.22605 0.99420 0.92537 1.00523 0.91274 0.76980 0.88251 0.91602 0.83614 0.92692 0.91548 0.92117 0.90067 0.90911 0.91809 0.74365 0.81257 0.77965 0.76574 0.89970 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.00 13.05 21.66 0.28 -49.72 16 2 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 3 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.34 -19.45 9.68 84.04 0.81 -18.63 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -29.89 5.29 -306.98 -1.62 -31.51 16 10 C 0.44 21.19 7.82 87.66 0.69 21.87 16 11 O -0.62 -35.28 15.78 -3.07 -0.05 -35.33 16 12 C 0.07 2.33 6.02 85.56 0.52 2.85 16 13 N -0.68 -21.49 5.92 -490.01 -2.90 -24.39 16 14 C 0.08 1.82 3.18 45.99 0.15 1.97 16 15 H 0.06 1.27 7.85 -2.39 -0.02 1.25 16 16 C -0.12 -2.51 6.51 31.32 0.20 -2.31 16 17 C -0.11 -1.84 6.05 31.32 0.19 -1.65 16 18 C -0.09 -1.29 2.93 -9.68 -0.03 -1.32 16 19 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 20 C 0.13 2.12 4.99 86.38 0.43 2.55 16 21 N -0.70 -11.46 5.39 -465.68 -2.51 -13.97 16 22 C 0.57 11.41 7.82 86.88 0.68 12.09 16 23 O -0.56 -14.39 16.39 -3.77 -0.06 -14.45 16 24 C 0.01 0.10 6.83 41.99 0.29 0.39 16 25 C -0.08 -0.82 9.73 22.77 0.22 -0.59 16 26 C -0.10 -0.36 10.20 22.49 0.23 -0.13 16 27 C 0.06 0.37 11.31 84.72 0.96 1.32 16 28 N -0.27 -4.17 11.51 -57.15 -0.66 -4.83 16 29 N -0.23 -4.11 10.75 -48.48 -0.52 -4.63 16 30 C -0.11 -2.07 5.73 31.93 0.18 -1.89 16 31 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 33 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.07 2.01 8.08 -2.39 -0.02 1.99 16 35 H 0.34 11.45 8.14 -89.69 -0.73 10.72 16 36 H 0.05 1.47 8.04 -2.39 -0.02 1.45 16 37 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.06 1.09 7.77 -2.39 -0.02 1.07 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.23 8.05 -2.39 -0.02 1.22 16 42 H 0.42 5.84 7.68 -92.71 -0.71 5.13 16 43 H 0.17 1.48 7.72 -2.91 -0.02 1.46 16 44 H 0.20 -1.08 8.06 -2.91 -0.02 -1.10 16 45 H 0.22 -0.53 8.06 -2.91 -0.02 -0.56 16 46 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.07 1.52 8.06 -2.39 -0.02 1.50 16 Total: -1.00 -77.95 398.95 -1.18 -79.13 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -1.14 Total: 37.96 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 5.98 Total: 16.37 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -7.93 Total: -129.05 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -0.11 Total: -49.78 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -77.95 -1.18 -79.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479483586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.124 kcal (2) G-P(sol) polarization free energy of solvation -77.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds