Wall clock time and date at job start Wed Apr 1 2020 04:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 120.00096 * 2 1 4 4 H 1.48499 * 109.46957 * 269.99857 * 3 2 1 5 5 H 1.48496 * 109.47118 * 30.00191 * 3 2 1 6 6 H 1.48499 * 109.47000 * 150.00148 * 3 2 1 7 7 C 1.38813 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00061 * 197.04133 * 7 2 1 9 9 N 1.36935 * 119.99842 * 17.04169 * 7 2 1 10 10 C 1.47077 * 120.88195 * 206.65243 * 9 7 2 11 11 C 1.53243 * 108.51835 * 231.15907 * 10 9 7 12 12 N 1.46901 * 109.33988 * 306.16827 * 11 10 9 13 13 C 1.46902 * 110.99973 * 187.25493 * 12 11 10 14 14 C 1.52994 * 109.47327 * 170.00232 * 13 12 11 15 15 N 1.46498 * 109.47449 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00519 * 179.97438 * 15 14 13 17 17 O 1.21278 * 119.99541 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00310 * 179.97438 * 16 15 14 19 19 H 1.08997 * 112.50865 * 309.67382 * 18 16 15 20 20 C 1.52881 * 113.16659 * 179.77097 * 18 16 15 21 21 C 1.51437 * 84.73810 * 244.77842 * 20 18 16 22 22 C 1.38971 * 145.49869 * 180.41241 * 21 20 18 23 23 C 1.37932 * 120.35866 * 180.02562 * 22 21 20 24 24 C 1.38465 * 120.14637 * 359.49196 * 23 22 21 25 25 F 1.35106 * 120.15068 * 180.27222 * 24 23 22 26 26 C 1.38396 * 119.70085 * 0.25176 * 24 23 22 27 27 C 1.38206 * 120.09926 * 0.02562 * 26 24 23 28 28 C 1.46895 * 111.26953 * 63.10497 * 12 11 10 29 29 C 1.47078 * 120.87932 * 26.62065 * 9 7 2 30 30 H 0.97005 * 119.99726 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.63211 * 111.45407 * 10 9 7 32 32 H 1.08995 * 109.79068 * 350.96388 * 10 9 7 33 33 H 1.08996 * 109.49272 * 186.20715 * 11 10 9 34 34 H 1.09000 * 109.51436 * 66.14441 * 11 10 9 35 35 H 1.08997 * 109.47185 * 49.99695 * 13 12 11 36 36 H 1.09005 * 109.46599 * 289.99873 * 13 12 11 37 37 H 1.08997 * 109.47427 * 59.99611 * 14 13 12 38 38 H 1.08998 * 109.46912 * 299.99792 * 14 13 12 39 39 H 0.97003 * 119.99502 * 359.97438 * 15 14 13 40 40 H 1.09000 * 113.98673 * 358.71956 * 20 18 16 41 41 H 1.09002 * 113.98962 * 130.67599 * 20 18 16 42 42 H 1.08006 * 119.81776 * 359.77708 * 22 21 20 43 43 H 1.08000 * 119.92548 * 179.76721 * 23 22 21 44 44 H 1.07995 * 119.95256 * 180.02562 * 26 24 23 45 45 H 1.09001 * 109.49563 * 56.85484 * 28 12 11 46 46 H 1.08997 * 109.49224 * 176.93343 * 28 12 11 47 47 H 1.09004 * 109.63199 * 248.54442 * 29 9 7 48 48 H 1.09002 * 109.63114 * 8.93794 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0546 -1.2225 0.2746 9 7 1.3706 -2.3621 -0.3465 10 6 1.8299 -3.6608 0.1691 11 6 2.0025 -4.6204 -1.0131 12 7 0.7558 -4.6658 -1.7888 13 6 0.8203 -5.7013 -2.8288 14 6 -0.5665 -5.8908 -3.4466 15 7 -0.5023 -6.9239 -4.4833 16 6 -1.6131 -7.2619 -5.1677 17 8 -2.6659 -6.7110 -4.9249 18 6 -1.5469 -8.3242 -6.2345 19 1 -0.7390 -8.1517 -6.9455 20 6 -2.8949 -8.5870 -6.9060 21 6 -2.7782 -9.9634 -6.2855 22 6 -3.3787 -11.2080 -6.1384 23 6 -2.7700 -12.1912 -5.3865 24 6 -1.5490 -11.9475 -4.7807 25 9 -0.9500 -12.9123 -4.0487 26 6 -0.9446 -10.7113 -4.9287 27 6 -1.5582 -9.7251 -5.6776 28 6 0.4423 -3.3540 -2.3708 29 6 0.2058 -2.3424 -1.2442 30 1 -0.4850 0.8401 0.0004 31 1 1.0899 -4.0623 0.8616 32 1 2.7832 -3.5376 0.6829 33 1 2.2357 -5.6179 -0.6408 34 1 2.8148 -4.2708 -1.6502 35 1 1.1525 -6.6404 -2.3864 36 1 1.5241 -5.3953 -3.6029 37 1 -0.8986 -4.9517 -3.8890 38 1 -1.2703 -6.1967 -2.6725 39 1 0.3398 -7.3647 -4.6772 40 1 -3.7134 -7.9885 -6.5059 41 1 -2.8554 -8.5844 -7.9953 42 1 -4.3291 -11.4052 -6.6121 43 1 -3.2447 -13.1547 -5.2737 44 1 0.0079 -10.5170 -4.4583 45 1 1.2762 -3.0215 -2.9889 46 1 -0.4559 -3.4331 -2.9832 47 1 -0.6902 -2.6172 -0.6876 48 1 0.0841 -1.3440 -1.6643 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479936963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:54 Heat of formation + Delta-G solvation = 20.031683 kcal Electronic energy + Delta-G solvation = -29436.020924 eV Core-core repulsion = 25214.582478 eV Total energy + Delta-G solvation = -4221.438446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.27628 -41.46693 -39.27793 -38.19918 -35.72117 -35.23611 -34.00831 -31.54145 -31.29160 -29.95703 -29.26237 -27.82856 -26.27298 -25.12618 -23.40973 -22.88027 -22.53400 -21.54894 -21.32274 -20.15595 -19.12666 -18.02262 -17.49301 -17.03230 -16.82133 -16.15326 -15.94606 -15.66786 -15.61931 -14.96265 -14.91909 -14.59689 -14.44153 -14.22726 -13.95426 -13.74872 -13.59224 -13.44064 -13.24458 -13.00949 -12.76222 -12.53104 -12.28834 -12.18366 -11.84036 -11.66837 -11.45110 -11.33701 -11.07540 -11.06359 -10.76312 -10.46767 -10.34648 -10.23535 -10.06396 -9.76186 -9.64127 -9.40948 -9.17775 -8.89319 -8.51218 -7.91304 -6.67585 -5.78024 -3.19595 0.62300 0.72555 2.29669 2.84069 3.10787 3.37640 3.40609 3.44386 3.45864 3.80704 3.94935 4.07598 4.32782 4.48612 4.49954 4.55495 4.72670 4.82940 4.95042 5.02208 5.12554 5.17442 5.30507 5.39022 5.41122 5.47360 5.48206 5.60198 5.64651 5.74719 5.79895 5.88354 5.92062 6.02316 6.08893 6.12551 6.17828 6.26611 6.31539 6.39980 6.52295 6.67178 6.91334 7.21760 7.24961 7.51947 7.62279 7.68701 7.80885 7.97620 8.43312 9.21017 9.84319 10.42810 11.30754 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022222 B = 0.001816 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.710602 B =15417.475283 C =16249.790720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.120 3.880 15 N -0.723 5.723 16 C 0.526 3.474 17 O -0.528 6.528 18 C -0.062 4.062 19 H 0.123 0.877 20 C -0.057 4.057 21 C -0.124 4.124 22 C -0.071 4.071 23 C -0.145 4.145 24 C 0.099 3.901 25 F -0.136 7.136 26 C -0.116 4.116 27 C -0.101 4.101 28 C 0.031 3.969 29 C 0.177 3.823 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.399 0.601 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.026 0.974 46 H 0.064 0.936 47 H 0.027 0.973 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 -24.005 -16.215 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.255 5.255 13 C -0.084 4.084 14 C -0.003 4.003 15 N -0.375 5.375 16 C 0.311 3.689 17 O -0.404 6.404 18 C -0.083 4.083 19 H 0.141 0.859 20 C -0.094 4.094 21 C -0.124 4.124 22 C -0.089 4.089 23 C -0.163 4.163 24 C 0.080 3.920 25 F -0.114 7.114 26 C -0.135 4.135 27 C -0.102 4.102 28 C -0.098 4.098 29 C 0.051 3.949 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.233 0.767 40 H 0.135 0.865 41 H 0.122 0.878 42 H 0.150 0.850 43 H 0.158 0.842 44 H 0.153 0.847 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.045 0.955 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.035 -23.584 -15.621 28.574 hybrid contribution 1.752 0.525 -0.426 1.878 sum -2.283 -23.058 -16.047 28.185 Atomic orbital electron populations 1.70028 1.05191 1.25508 1.53951 1.25039 0.95326 0.98382 1.01032 0.86277 0.79072 0.83706 0.77637 1.21513 1.21730 1.20485 1.19196 0.92586 0.84770 1.41675 0.91620 1.44125 1.34242 1.01268 1.52242 1.20970 0.97869 0.86488 0.92513 1.22627 0.89257 0.99525 0.96893 1.61869 1.34762 1.05754 1.23069 1.22192 0.94953 0.96964 0.94285 1.21425 0.98235 0.90860 0.89820 1.45923 1.11492 1.41195 1.38868 1.19991 0.83895 0.82828 0.82170 1.90738 1.29235 1.53819 1.66570 1.21365 1.01403 0.89152 0.96420 0.85915 1.21764 0.96608 0.90473 1.00555 1.22410 0.95800 0.95328 0.98878 1.20385 0.99857 0.91058 0.97637 1.21005 0.94759 1.00997 0.99565 1.17316 0.93055 0.86197 0.95465 1.91526 1.83232 1.61691 1.74971 1.20047 1.01522 0.91053 1.00863 1.20993 0.96707 0.94801 0.97671 1.23002 0.98814 0.89202 0.98762 1.20872 0.89015 0.96595 0.88401 0.93573 0.95609 0.92543 0.91985 0.95338 0.90895 0.94960 0.90849 0.90365 0.76726 0.86521 0.87774 0.85043 0.84246 0.84735 0.95584 0.91776 0.95460 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 11.15 55.49 0.62 -25.74 16 2 C 0.00 0.02 4.93 -17.43 -0.09 -0.06 16 3 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.96 9.63 -15.06 -0.15 -7.11 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -15.10 3.04 -172.01 -0.52 -15.63 16 10 C 0.15 3.14 6.69 -3.60 -0.02 3.11 16 11 C 0.05 0.81 5.62 -3.70 -0.02 0.78 16 12 N -0.53 -9.10 4.63 -234.32 -1.08 -10.18 16 13 C 0.05 0.58 5.08 -3.83 -0.02 0.56 16 14 C 0.12 1.54 5.60 -4.05 -0.02 1.51 16 15 N -0.72 -7.20 5.56 -60.30 -0.33 -7.54 16 16 C 0.53 5.86 7.33 -10.99 -0.08 5.78 16 17 O -0.53 -8.08 15.66 5.56 0.09 -8.00 16 18 C -0.06 -0.47 4.15 -96.57 -0.40 -0.87 16 19 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 20 C -0.06 -0.41 7.91 -27.58 -0.22 -0.63 16 21 C -0.12 -1.01 7.32 -107.55 -0.79 -1.79 16 22 C -0.07 -0.51 10.04 -39.42 -0.40 -0.91 16 23 C -0.14 -1.08 10.01 -39.61 -0.40 -1.47 16 24 C 0.10 0.87 7.31 -39.44 -0.29 0.59 16 25 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 26 C -0.12 -0.98 10.02 -39.53 -0.40 -1.38 16 27 C -0.10 -0.85 7.05 -104.56 -0.74 -1.59 16 28 C 0.03 0.60 5.46 -3.70 -0.02 0.58 16 29 C 0.18 4.30 5.42 -3.60 -0.02 4.28 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 33 H 0.06 0.91 7.99 -51.93 -0.41 0.50 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.83 7.97 -51.93 -0.41 0.41 16 36 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 37 H 0.07 1.06 6.40 -51.93 -0.33 0.73 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.40 2.77 8.47 -40.82 -0.35 2.42 16 40 H 0.12 1.02 7.02 -51.93 -0.36 0.65 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 44 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 1.14 6.16 -51.93 -0.32 0.82 16 47 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 2.40 6.11 -51.93 -0.32 2.08 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -33.09 391.36 -11.51 -44.59 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.12 Total: -0.23 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -4.06 Total: 1.39 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -1.32 Total: -59.09 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.09 Total: -8.00 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.09 -11.51 -44.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479936963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.624 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds