Wall clock time and date at job start Wed Apr 1 2020 04:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99880 * 2 1 4 4 H 1.48507 * 109.46995 * 239.99641 * 3 2 1 5 5 H 1.48498 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47521 * 119.99886 * 3 2 1 7 7 C 1.38952 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00018 * 359.72637 * 7 2 1 10 10 C 1.34777 * 119.99997 * 180.27311 * 9 7 2 11 11 O 1.21291 * 119.99986 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99933 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47124 * 174.69124 * 12 10 9 14 14 C 1.46850 * 110.99799 * 300.50253 * 13 12 10 15 15 C 1.53035 * 109.52337 * 185.83707 * 14 13 12 16 16 C 1.53114 * 109.28294 * 300.82530 * 15 14 13 17 17 C 1.53117 * 109.16274 * 57.65038 * 16 15 14 18 18 C 1.46851 * 111.00158 * 64.71086 * 13 12 10 19 19 H 1.08998 * 109.46118 * 294.17830 * 18 13 12 20 20 C 1.52998 * 109.45894 * 54.14777 * 18 13 12 21 21 N 1.46497 * 109.47152 * 54.43106 * 20 18 13 22 22 C 1.34783 * 119.99801 * 174.96265 * 21 20 18 23 23 O 1.21555 * 119.99791 * 359.97438 * 22 21 20 24 24 C 1.47828 * 119.99825 * 180.02562 * 22 21 20 25 25 C 1.39947 * 120.94295 * 359.71487 * 24 22 21 26 26 N 1.32150 * 118.92538 * 179.69402 * 25 24 22 27 27 C 1.31866 * 120.96390 * 0.62227 * 26 25 24 28 28 N 1.31871 * 122.09810 * 359.64717 * 27 26 25 29 29 C 1.32143 * 120.96506 * 0.02978 * 28 27 26 30 30 H 0.96999 * 120.00156 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99974 * 0.27808 * 9 7 2 32 32 H 1.09006 * 109.46624 * 294.68847 * 12 10 9 33 33 H 1.08993 * 109.47288 * 54.68636 * 12 10 9 34 34 H 1.09002 * 109.46426 * 305.85854 * 14 13 12 35 35 H 1.08999 * 109.46200 * 65.82119 * 14 13 12 36 36 H 1.09001 * 109.50336 * 180.87765 * 15 14 13 37 37 H 1.09004 * 109.53423 * 60.78375 * 15 14 13 38 38 H 1.09007 * 109.51553 * 297.74621 * 16 15 14 39 39 H 1.08999 * 109.57942 * 177.59319 * 16 15 14 40 40 H 1.08999 * 109.50127 * 182.40868 * 17 16 15 41 41 H 1.08993 * 109.50294 * 62.28527 * 17 16 15 42 42 H 1.08998 * 109.46847 * 174.43152 * 20 18 13 43 43 H 1.08998 * 109.47240 * 294.42852 * 20 18 13 44 44 H 0.96994 * 120.00564 * 354.95875 * 21 20 18 45 45 H 1.08006 * 120.53507 * 359.97438 * 25 24 22 46 46 H 1.07997 * 118.95058 * 179.67584 * 27 26 25 47 47 H 1.08004 * 120.53275 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0067 10 6 1.9973 -3.5578 0.0128 11 8 3.2102 -3.5578 0.0133 12 6 1.2438 -4.8630 0.0191 13 7 2.1933 -5.9771 -0.1032 14 6 2.9673 -5.8749 -1.3469 15 6 3.8382 -7.1225 -1.5114 16 6 4.7803 -7.2434 -0.3105 17 6 3.9509 -7.2994 0.9754 18 6 3.0768 -6.0466 1.0678 19 1 3.7124 -5.1616 1.0962 20 6 2.2312 -6.1078 2.3414 21 7 1.2829 -7.2203 2.2449 22 6 0.5001 -7.5317 3.2970 23 8 0.5814 -6.8898 4.3260 24 6 -0.4564 -8.6546 3.1998 25 6 -0.5697 -9.4036 2.0231 26 7 -1.4335 -10.4028 1.9821 27 6 -2.1896 -10.6892 3.0238 28 7 -2.1192 -10.0062 4.1497 29 6 -1.2785 -8.9950 4.2800 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3907 0.0067 32 1 0.6901 -4.9583 0.9531 33 1 0.5481 -4.8848 -0.8196 34 1 2.2854 -5.7937 -2.1934 35 1 3.6034 -4.9906 -1.3072 36 1 4.4242 -7.0392 -2.4267 37 1 3.2024 -8.0062 -1.5655 38 1 5.4431 -6.3785 -0.2791 39 1 5.3732 -8.1535 -0.4015 40 1 4.6174 -7.3424 1.8367 41 1 3.3164 -8.1855 0.9608 42 1 2.8819 -6.2588 3.2026 43 1 1.6836 -5.1728 2.4592 44 1 1.2182 -7.7327 1.4239 45 1 0.0423 -9.1716 1.1639 46 1 -2.8884 -11.5096 2.9529 47 1 -1.2264 -8.4407 5.2055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480314809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:34 Heat of formation + Delta-G solvation = -16.501090 kcal Electronic energy + Delta-G solvation = -31107.209737 eV Core-core repulsion = 26904.107072 eV Total energy + Delta-G solvation = -4203.102664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.48185 -40.15237 -39.06945 -37.46144 -34.96608 -34.16269 -34.07372 -33.03899 -32.68882 -31.35489 -30.86970 -27.59396 -26.65920 -25.19598 -24.77839 -24.50644 -22.79271 -21.51488 -21.08350 -19.67801 -19.10392 -18.43779 -17.97731 -17.85082 -17.43191 -16.07164 -15.97880 -15.73977 -15.34525 -15.22591 -14.65516 -14.60961 -14.37690 -14.16511 -14.06565 -13.94249 -13.90686 -13.59532 -13.49644 -13.07314 -12.74357 -12.25470 -11.94958 -11.88454 -11.76928 -11.57989 -11.38497 -11.25844 -11.19497 -10.71958 -10.59862 -10.50437 -10.31735 -10.25604 -10.12531 -10.08081 -10.06605 -9.66975 -9.52409 -9.32790 -9.05652 -8.06604 -7.55185 -6.51201 -3.92882 0.10830 0.66288 2.66445 2.97480 3.12363 3.20106 3.23714 3.50804 3.67841 3.74601 3.79091 4.08670 4.09822 4.15080 4.42479 4.66873 4.80581 4.84865 4.95067 5.00792 5.05214 5.15099 5.33806 5.34359 5.37302 5.59260 5.64338 5.78987 5.82316 5.87539 5.89227 5.93138 6.01722 6.06673 6.09679 6.15503 6.24518 6.31094 6.33283 6.47106 6.52177 6.68790 7.23797 7.31518 7.40003 7.45277 7.61383 7.94035 8.04861 8.48262 9.06420 9.42130 9.91712 10.65091 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.002973 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.466400 B = 9414.502340 C =10976.316884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.304 4.304 8 H 0.102 0.898 9 N -0.553 5.553 10 C 0.405 3.595 11 O -0.595 6.595 12 C 0.034 3.966 13 N -0.510 5.510 14 C 0.038 3.962 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.106 4.106 18 C 0.054 3.946 19 H 0.102 0.898 20 C 0.126 3.874 21 N -0.704 5.704 22 C 0.561 3.439 23 O -0.533 6.533 24 C -0.236 4.236 25 C 0.184 3.816 26 N -0.521 5.521 27 C 0.310 3.690 28 N -0.523 5.523 29 C 0.206 3.794 30 H 0.274 0.726 31 H 0.393 0.607 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.406 0.594 45 H 0.174 0.826 46 H 0.201 0.799 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 -19.647 1.552 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.434 4.434 8 H 0.120 0.880 9 N -0.187 5.187 10 C 0.191 3.809 11 O -0.483 6.483 12 C -0.098 4.098 13 N -0.233 5.233 14 C -0.090 4.090 15 C -0.150 4.150 16 C -0.157 4.157 17 C -0.144 4.144 18 C -0.055 4.055 19 H 0.120 0.880 20 C 0.002 3.998 21 N -0.356 5.356 22 C 0.346 3.654 23 O -0.411 6.411 24 C -0.243 4.243 25 C 0.017 3.983 26 N -0.235 5.235 27 C 0.023 3.977 28 N -0.236 5.236 29 C 0.039 3.961 30 H 0.084 0.916 31 H 0.226 0.774 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.243 0.757 45 H 0.191 0.809 46 H 0.217 0.783 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.596 -20.204 2.186 20.331 hybrid contribution 0.655 2.165 -0.411 2.299 sum 0.059 -18.039 1.775 18.126 Atomic orbital electron populations 1.69596 1.05994 1.28521 1.49560 1.25296 0.95616 0.99874 0.96909 0.85925 0.78833 0.80422 0.79103 1.19869 1.20871 1.19824 1.19655 0.93340 0.82348 1.48059 0.87970 1.42051 1.09319 1.04977 1.62389 1.20982 0.88786 0.85867 0.85289 1.90394 1.13841 1.86836 1.57223 1.22136 0.95652 0.88497 1.03468 1.62430 1.18209 1.40271 1.02440 1.22305 0.96855 0.98790 0.91001 1.21542 0.97483 0.98366 0.97560 1.21541 0.97849 1.01462 0.94828 1.21577 0.97683 0.97385 0.97761 1.22206 0.94274 1.00192 0.88781 0.88004 1.21583 0.91060 0.89188 0.97961 1.45850 1.39201 1.34773 1.15808 1.17787 0.80493 0.83089 0.84048 1.90818 1.68480 1.52246 1.29570 1.21892 1.02893 1.01237 0.98322 1.23551 0.91489 0.87384 0.95853 1.68486 1.06834 1.17040 1.31099 1.25270 0.93210 0.95807 0.83403 1.68581 1.21049 1.07478 1.26498 1.23543 0.85376 0.89360 0.97772 0.91625 0.77405 0.89144 0.89390 0.91740 0.90427 0.92074 0.91992 0.91814 0.92454 0.91819 0.92048 0.90694 0.90910 0.75662 0.80931 0.78257 0.80143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.87 13.05 55.50 0.72 -23.14 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 8 H 0.10 2.87 7.16 -52.49 -0.38 2.49 16 9 N -0.55 -13.28 5.29 -10.96 -0.06 -13.34 16 10 C 0.41 8.64 7.18 -10.98 -0.08 8.56 16 11 O -0.60 -14.09 11.22 5.55 0.06 -14.02 16 12 C 0.03 0.54 5.45 -4.98 -0.03 0.52 16 13 N -0.51 -6.97 4.04 -228.12 -0.92 -7.89 16 14 C 0.04 0.54 5.00 -3.83 -0.02 0.52 16 15 C -0.11 -1.27 6.09 -26.65 -0.16 -1.43 16 16 C -0.12 -1.33 6.00 -26.61 -0.16 -1.49 16 17 C -0.11 -1.17 5.26 -26.65 -0.14 -1.31 16 18 C 0.05 0.74 1.72 -67.72 -0.12 0.62 16 19 H 0.10 1.80 5.71 -51.93 -0.30 1.51 16 20 C 0.13 1.69 4.55 -4.04 -0.02 1.67 16 21 N -0.70 -7.83 4.97 -61.26 -0.30 -8.13 16 22 C 0.56 6.95 7.79 -12.33 -0.10 6.86 16 23 O -0.53 -8.53 16.44 5.32 0.09 -8.44 16 24 C -0.24 -2.42 5.91 -104.69 -0.62 -3.04 16 25 C 0.18 1.63 10.81 -16.77 -0.18 1.45 16 26 N -0.52 -4.89 10.42 -14.24 -0.15 -5.04 16 27 C 0.31 2.65 12.27 -92.03 -1.13 1.52 16 28 N -0.52 -5.22 10.42 -14.24 -0.15 -5.37 16 29 C 0.21 2.12 10.88 -16.78 -0.18 1.94 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 32 H 0.09 1.39 6.01 -51.93 -0.31 1.08 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.08 1.41 5.66 -51.93 -0.29 1.12 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.60 7.32 -51.93 -0.38 0.22 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.07 1.16 6.56 -51.93 -0.34 0.82 16 44 H 0.41 3.77 5.57 -40.82 -0.23 3.55 16 45 H 0.17 1.12 6.54 -52.48 -0.34 0.78 16 46 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16 47 H 0.18 1.71 7.75 -52.48 -0.41 1.31 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -30.92 378.45 -9.43 -40.35 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -6.24 Total: 15.08 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -3.17 Total: 8.66 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.86 Total: -62.92 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.15 Total: -22.46 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.92 -9.43 -40.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480314809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.851 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds