Wall clock time and date at job start Wed Apr 1 2020 04:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99880 * 2 1 4 4 H 1.48507 * 109.46995 * 239.99641 * 3 2 1 5 5 H 1.48498 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47521 * 119.99886 * 3 2 1 7 7 C 1.38952 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00018 * 359.72637 * 7 2 1 10 10 C 1.34777 * 119.99997 * 180.27311 * 9 7 2 11 11 O 1.21291 * 119.99986 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99933 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47124 * 174.69124 * 12 10 9 14 14 C 1.46850 * 110.99799 * 300.50253 * 13 12 10 15 15 C 1.53035 * 109.52337 * 185.83707 * 14 13 12 16 16 C 1.53114 * 109.28294 * 300.82530 * 15 14 13 17 17 C 1.53117 * 109.16274 * 57.65038 * 16 15 14 18 18 C 1.46851 * 111.00158 * 64.71086 * 13 12 10 19 19 H 1.08998 * 109.46118 * 294.17830 * 18 13 12 20 20 C 1.52998 * 109.45894 * 54.14777 * 18 13 12 21 21 N 1.46497 * 109.47152 * 54.43106 * 20 18 13 22 22 C 1.34783 * 119.99801 * 174.96265 * 21 20 18 23 23 O 1.21555 * 119.99791 * 359.97438 * 22 21 20 24 24 C 1.47828 * 119.99825 * 180.02562 * 22 21 20 25 25 C 1.39947 * 120.94295 * 359.71487 * 24 22 21 26 26 N 1.32150 * 118.92538 * 179.69402 * 25 24 22 27 27 C 1.31866 * 120.96390 * 0.62227 * 26 25 24 28 28 N 1.31871 * 122.09810 * 359.64717 * 27 26 25 29 29 C 1.32143 * 120.96506 * 0.02978 * 28 27 26 30 30 H 0.96999 * 120.00156 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99974 * 0.27808 * 9 7 2 32 32 H 1.09006 * 109.46624 * 294.68847 * 12 10 9 33 33 H 1.08993 * 109.47288 * 54.68636 * 12 10 9 34 34 H 1.09002 * 109.46426 * 305.85854 * 14 13 12 35 35 H 1.08999 * 109.46200 * 65.82119 * 14 13 12 36 36 H 1.09001 * 109.50336 * 180.87765 * 15 14 13 37 37 H 1.09004 * 109.53423 * 60.78375 * 15 14 13 38 38 H 1.09007 * 109.51553 * 297.74621 * 16 15 14 39 39 H 1.08999 * 109.57942 * 177.59319 * 16 15 14 40 40 H 1.08999 * 109.50127 * 182.40868 * 17 16 15 41 41 H 1.08993 * 109.50294 * 62.28527 * 17 16 15 42 42 H 1.08998 * 109.46847 * 174.43152 * 20 18 13 43 43 H 1.08998 * 109.47240 * 294.42852 * 20 18 13 44 44 H 0.96994 * 120.00564 * 354.95875 * 21 20 18 45 45 H 1.08006 * 120.53507 * 359.97438 * 25 24 22 46 46 H 1.07997 * 118.95058 * 179.67584 * 27 26 25 47 47 H 1.08004 * 120.53275 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0067 10 6 1.9973 -3.5578 0.0128 11 8 3.2102 -3.5578 0.0133 12 6 1.2438 -4.8630 0.0191 13 7 2.1933 -5.9771 -0.1032 14 6 2.9673 -5.8749 -1.3469 15 6 3.8382 -7.1225 -1.5114 16 6 4.7803 -7.2434 -0.3105 17 6 3.9509 -7.2994 0.9754 18 6 3.0768 -6.0466 1.0678 19 1 3.7124 -5.1616 1.0962 20 6 2.2312 -6.1078 2.3414 21 7 1.2829 -7.2203 2.2449 22 6 0.5001 -7.5317 3.2970 23 8 0.5814 -6.8898 4.3260 24 6 -0.4564 -8.6546 3.1998 25 6 -0.5697 -9.4036 2.0231 26 7 -1.4335 -10.4028 1.9821 27 6 -2.1896 -10.6892 3.0238 28 7 -2.1192 -10.0062 4.1497 29 6 -1.2785 -8.9950 4.2800 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3907 0.0067 32 1 0.6901 -4.9583 0.9531 33 1 0.5481 -4.8848 -0.8196 34 1 2.2854 -5.7937 -2.1934 35 1 3.6034 -4.9906 -1.3072 36 1 4.4242 -7.0392 -2.4267 37 1 3.2024 -8.0062 -1.5655 38 1 5.4431 -6.3785 -0.2791 39 1 5.3732 -8.1535 -0.4015 40 1 4.6174 -7.3424 1.8367 41 1 3.3164 -8.1855 0.9608 42 1 2.8819 -6.2588 3.2026 43 1 1.6836 -5.1728 2.4592 44 1 1.2182 -7.7327 1.4239 45 1 0.0423 -9.1716 1.1639 46 1 -2.8884 -11.5096 2.9529 47 1 -1.2264 -8.4407 5.2055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480314809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:33 Heat of formation + Delta-G solvation = -38.958928 kcal Electronic energy + Delta-G solvation = -31108.183582 eV Core-core repulsion = 26904.107072 eV Total energy + Delta-G solvation = -4204.076509 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.25478 -41.40122 -40.23925 -38.95764 -36.09674 -35.90812 -34.82982 -34.25725 -33.55964 -33.28362 -31.86540 -28.98213 -27.74702 -26.45386 -25.91066 -25.43165 -23.97690 -22.59707 -22.08361 -21.16877 -20.49379 -19.76099 -19.23698 -18.66391 -18.27518 -17.71322 -17.13076 -16.83710 -16.61158 -16.38160 -16.21044 -15.69232 -15.64473 -15.46404 -15.22444 -15.05420 -14.90039 -14.67024 -14.44098 -14.35396 -14.00546 -13.50481 -13.42193 -13.13028 -13.01340 -12.81458 -12.75310 -12.57661 -12.47309 -12.17110 -11.99382 -11.97568 -11.55018 -11.38605 -11.28034 -11.15014 -11.08633 -10.94685 -10.86944 -10.38386 -10.11306 -10.01055 -9.04706 -8.48368 -5.98174 -0.63351 -0.05622 1.35037 1.38029 1.48358 1.74561 1.95731 2.04075 2.26245 2.75546 2.92357 3.05711 3.12204 3.17838 3.24772 3.38065 3.64229 3.71168 3.85987 3.89987 4.04654 4.23468 4.31764 4.36633 4.38227 4.48298 4.56485 4.59772 4.66932 4.70072 4.79164 4.86631 4.95915 5.06495 5.16183 5.20517 5.21570 5.29490 5.32412 5.36847 5.38051 5.60509 5.76253 5.89268 6.04638 6.10742 6.46331 6.55689 6.91822 7.09211 7.10240 7.53122 8.07153 8.66828 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.002973 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.466400 B = 9414.502340 C =10976.316884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.989 3.011 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.571 5.571 10 C 0.409 3.591 11 O -0.618 6.618 12 C 0.044 3.956 13 N -0.485 5.485 14 C 0.037 3.963 15 C -0.104 4.104 16 C -0.119 4.119 17 C -0.100 4.100 18 C 0.059 3.941 19 H 0.059 0.941 20 C 0.135 3.865 21 N -0.689 5.689 22 C 0.566 3.434 23 O -0.575 6.575 24 C -0.246 4.246 25 C 0.196 3.804 26 N -0.531 5.531 27 C 0.313 3.687 28 N -0.537 5.537 29 C 0.201 3.799 30 H 0.277 0.723 31 H 0.394 0.606 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.419 0.581 45 H 0.199 0.801 46 H 0.234 0.766 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 -22.323 0.631 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.813 3.187 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.207 5.207 10 C 0.197 3.803 11 O -0.506 6.506 12 C -0.088 4.088 13 N -0.208 5.208 14 C -0.091 4.091 15 C -0.142 4.142 16 C -0.156 4.156 17 C -0.138 4.138 18 C -0.050 4.050 19 H 0.076 0.924 20 C 0.011 3.989 21 N -0.341 5.341 22 C 0.352 3.648 23 O -0.456 6.456 24 C -0.253 4.253 25 C 0.028 3.972 26 N -0.244 5.244 27 C 0.028 3.972 28 N -0.251 5.251 29 C 0.035 3.965 30 H 0.087 0.913 31 H 0.227 0.773 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.258 0.742 45 H 0.216 0.784 46 H 0.250 0.750 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.069 -22.923 1.237 22.982 hybrid contribution 0.832 2.871 -0.126 2.992 sum -0.237 -20.052 1.112 20.084 Atomic orbital electron populations 1.69662 1.06846 1.29338 1.50150 1.26017 0.96472 1.02428 0.96316 0.85044 0.77819 0.76940 0.78898 1.19605 1.19609 1.19883 1.19597 0.92623 0.84145 1.49803 0.90302 1.42146 1.09299 1.05128 1.64158 1.22080 0.88788 0.86986 0.82480 1.90415 1.15394 1.87587 1.57154 1.22180 0.95895 0.85853 1.04826 1.62548 1.17762 1.37995 1.02500 1.22311 0.96745 0.98858 0.91172 1.21517 0.97306 0.97356 0.97992 1.21549 0.97722 1.01656 0.94687 1.21570 0.97597 0.96416 0.98204 1.22089 0.93992 1.00148 0.88734 0.92356 1.21304 0.91050 0.88764 0.97822 1.45625 1.38407 1.33940 1.16165 1.18051 0.80330 0.83038 0.83368 1.90803 1.69754 1.53840 1.31190 1.21640 1.03132 1.01255 0.99314 1.23919 0.91039 0.86429 0.95764 1.68607 1.07234 1.17235 1.31313 1.25978 0.92877 0.95777 0.82599 1.68654 1.21291 1.07735 1.27378 1.23619 0.85457 0.89521 0.97945 0.91328 0.77268 0.88162 0.87284 0.91110 0.94866 0.91252 0.89495 0.94348 0.89754 0.91181 0.89511 0.90751 0.93878 0.74199 0.78430 0.75043 0.80328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.63 13.05 21.66 0.28 -49.34 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 3 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.33 -18.48 9.68 84.04 0.81 -17.66 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -28.47 5.29 -306.98 -1.62 -30.09 16 10 C 0.41 18.04 7.18 87.66 0.63 18.67 16 11 O -0.62 -30.67 11.22 -3.06 -0.03 -30.71 16 12 C 0.04 1.39 5.45 85.56 0.47 1.86 16 13 N -0.49 -12.67 4.04 -875.64 -3.54 -16.21 16 14 C 0.04 1.02 5.00 86.32 0.43 1.45 16 15 C -0.10 -2.08 6.09 30.64 0.19 -1.89 16 16 C -0.12 -2.38 6.00 30.67 0.18 -2.20 16 17 C -0.10 -1.99 5.26 30.65 0.16 -1.83 16 18 C 0.06 1.60 1.72 44.94 0.08 1.68 16 19 H 0.06 2.16 5.71 -2.39 -0.01 2.15 16 20 C 0.14 3.61 4.55 86.38 0.39 4.00 16 21 N -0.69 -14.20 4.97 -465.99 -2.32 -16.52 16 22 C 0.57 13.49 7.79 86.78 0.68 14.17 16 23 O -0.58 -18.58 16.44 -3.89 -0.06 -18.64 16 24 C -0.25 -4.65 5.91 -19.91 -0.12 -4.77 16 25 C 0.20 2.88 10.81 85.06 0.92 3.80 16 26 N -0.53 -8.30 10.42 -198.98 -2.07 -10.37 16 27 C 0.31 4.50 12.27 180.84 2.22 6.72 16 28 N -0.54 -9.81 10.42 -198.98 -2.07 -11.88 16 29 C 0.20 3.94 10.88 85.06 0.93 4.87 16 30 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.39 19.04 7.90 -92.71 -0.73 18.31 16 32 H 0.10 3.04 6.01 -2.38 -0.01 3.02 16 33 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 35 H 0.03 1.24 5.66 -2.39 -0.01 1.23 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.33 7.32 -2.39 -0.02 1.31 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.04 1.42 6.56 -2.39 -0.02 1.41 16 44 H 0.42 6.45 5.57 -92.71 -0.52 5.94 16 45 H 0.20 1.73 6.54 -2.91 -0.02 1.71 16 46 H 0.23 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.18 3.42 7.75 -2.91 -0.02 3.40 16 Total: -1.00 -70.35 378.45 -1.19 -71.55 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: -0.21 Total: 38.64 kcal Atomic # 6 Polarization: 20.25 SS G_CDS: 8.43 Total: 28.68 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -11.34 Total: -134.41 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -0.10 Total: -49.35 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -70.35 -1.19 -71.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480314809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.587 kcal (2) G-P(sol) polarization free energy of solvation -70.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds